Perry G. Ridge, Ph.D. - Publications

Affiliations: 
2013 Biology Brigham Young University, Provo, UT, United States 
Area:
Alzheimer's disease genetics

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 McKinnon LM, Miller JB, Whiting MF, Kauwe JSK, Ridge PG. A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates. Scientific Reports. 11: 622. PMID 33436653 DOI: 10.1038/s41598-020-78803-3  0.6
2020 Murcia JDG, Weinert A, Freitas CMT, Arens DK, Ferrel MN, Grose JH, Ridge PG, Wilson E, Kauwe JSK, Weber KS. Atypical chemokine receptor ACKR2-V41A has decreased CCL2 binding, scavenging, and activation, supporting sustained inflammation and increased Alzheimer's disease risk. Scientific Reports. 10: 8019. PMID 32415244 DOI: 10.1038/S41598-020-64755-1  0.6
2020 Miller JB, McKinnon LM, Whiting MF, Kauwe JSK, Ridge PG. Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life. Plos One. 15: e0232260. PMID 32401752 DOI: 10.1371/Journal.Pone.0232260  0.6
2020 Pickett BD, Wallace EM, Ridge PG, Kauwe JSK. Lingering Taxonomic Challenges Hinder Conservation and Management of Global Bonefishes Fisheries. 45: 347-358. DOI: 10.1002/Fsh.10438  0.6
2018 Sexton CE, Ebbert MTW, Miller RH, Ferrel M, Tschanz JAT, Corcoran CD, Ridge PG, Kauwe JSK. Common DNA Variants Accurately Rank an Individual of Extreme Height. International Journal of Genomics. 2018: 5121540. PMID 30255029 DOI: 10.1155/2018/5121540  0.72
2018 Ridge PG, Kauwe JSK. Mitochondria and Alzheimer's Disease: the Role of Mitochondrial Genetic Variation. Current Genetic Medicine Reports. 6: 1-10. PMID 29564191 DOI: 10.1007/S40142-018-0132-2  0.6
2018 Ridge PG, Karch CM, Hsu S, Arano I, Teerlink CC, Ebbert MTW, Murcia JDG, Farnham JM, Damato AR, Allen M, Wang X, Harari O, Fernandez VM, Guerreiro R, Bras J, et al. Correction to: Linkage, whole genome sequence, and biological data implicate variants in RAB10 in Alzheimer's disease resilience. Genome Medicine. 10: 4. PMID 29329552 DOI: 10.1186/S13073-018-0516-7  0.72
2018 Ridge PG, Wadsworth ME, Miller JB, Saykin AJ, Green RC, Kauwe JSK. Assembly of 809 whole mitochondrial genomes with clinical, imaging, and fluid biomarker phenotyping. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 29306584 DOI: 10.1016/J.Jalz.2017.11.013  0.72
2017 Ridge PG, Karch CM, Hsu S, Arano I, Teerlink CC, Ebbert MTW, Gonzalez Murcia JD, Farnham JM, Damato AR, Allen M, Wang X, Harari O, Fernandez VM, Guerreiro R, Bras J, et al. Linkage, whole genome sequence, and biological data implicate variants in RAB10 in Alzheimer's disease resilience. Genome Medicine. 9: 100. PMID 29183403 DOI: 10.1186/S13073-017-0486-1  0.72
2016 Bodily PM, Fujimoto MS, Page JT, Clement MJ, Ebbert MT, Ridge PG. A novel approach for multi-SNP GWAS and its application in Alzheimer's disease. Bmc Bioinformatics. 17: 268. PMID 27453991 DOI: 10.1186/S12859-016-1093-7  0.72
2016 Ebbert MT, Staley LA, Parker J, Parker S, Bailey M, Ridge PG, Goate AM, Kauwe JS. Variants in CCL16 are associated with blood plasma and cerebrospinal fluid CCL16 protein levels. Bmc Genomics. 17: 437. PMID 27357396 DOI: 10.1186/S12864-016-2788-X  0.72
2016 Staley LA, Ebbert MT, Bunker D, Bailey M, Ridge PG, Goate AM, Kauwe JS. Variants in ACPP are associated with cerebrospinal fluid Prostatic Acid Phosphatase levels. Bmc Genomics. 17: 439. PMID 27357282 DOI: 10.1186/S12864-016-2787-Y  0.72
2016 Staley LA, Ebbert MT, Parker S, Bailey M, Ridge PG, Goate AM, Kauwe JS. Genome-wide association study of prolactin levels in blood plasma and cerebrospinal fluid. Bmc Genomics. 17: 436. PMID 27357110 DOI: 10.1186/S12864-016-2785-0  0.72
2016 Sassi C, Nalls MA, Ridge PG, Gibbs JR, Ding J, Lupton MK, Troakes C, Lunnon K, Al-Sarraj S, Brown KS, Medway C, Clement N, Lord J, Turton J, Bras J, et al. ABCA7 p.G215S as potential protective factor for Alzheimer's disease. Neurobiology of Aging. PMID 27289440 DOI: 10.1016/J.Neurobiolaging.2016.04.004  0.72
2016 Sassi C, Ridge PG, Nalls MA, Gibbs R, Ding J, Lupton MK, Troakes C, Lunnon K, Al-Sarraj S, Brown KS, Medway C, Lord J, Turton J, Morgan K, et al. Influence of Coding Variability in APP-Aβ Metabolism Genes in Sporadic Alzheimer's Disease. Plos One. 11: e0150079. PMID 27249223 DOI: 10.1371/Journal.Pone.0150079  0.72
2016 Ridge PG, Hoyt KB, Boehme K, Mukherjee S, Crane PK, Haines JL, Mayeux R, Farrer LA, Pericak-Vance MA, Schellenberg GD, Kauwe JS. Assessment of the genetic variance of late-onset Alzheimer's disease. Neurobiology of Aging. PMID 27036079 DOI: 10.1016/J.Neurobiolaging.2016.02.024  0.32
2016 Deming Y, Xia J, Cai Y, Lord J, Del-Aguila JL, Fernandez MV, Carrell D, Black K, Budde J, Ma S, Saef B, Howells B, Bertelsen S, Bailey M, Ridge PG, et al. Genetic studies of plasma analytes identify novel potential biomarkers for several complex traits Scientific Reports. 6. DOI: 10.1038/Srep18092  0.72
2015 Ebbert MT, Boehme KL, Wadsworth ME, Staley LA, Mukherjee S, Crane PK, Ridge PG, Kauwe JS. Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 26449541 DOI: 10.1016/J.Jalz.2015.08.163  0.72
2015 Gargis AS, Kalman L, Bick DP, da Silva C, Dimmock DP, Funke BH, Gowrisankar S, Hegde MR, Kulkarni S, Mason CE, Nagarajan R, Voelkerding KV, Worthey EA, Aziz N, Barnes J, ... ... Ridge PG, et al. Good laboratory practice for clinical next-generation sequencing informatics pipelines. Nature Biotechnology. 33: 689-93. PMID 26154004 DOI: 10.1038/Nbt.3237  0.72
2015 Ebbert MT, Ridge PG, Kauwe JS. Bridging the Gap between Statistical and Biological Epistasis in Alzheimer's Disease. Biomed Research International. 2015: 870123. PMID 26075270 DOI: 10.1155/2015/870123  0.72
2015 Lythgoe C, Perkes A, Peterson M, Schmutz C, Leary M, Ebbert MT, Ridge PG, Norton MC, Tschanz JT, Munger RG, Corcoran CD, Kauwe JS. Population-based analysis of cholesteryl ester transfer protein identifies association between I405V and cognitive decline: the Cache County Study. Neurobiology of Aging. 36: 547.e1-3. PMID 25260850 DOI: 10.1016/J.Neurobiolaging.2014.08.022  0.72
2014 Kauwe JS, Bailey MH, Ridge PG, Perry R, Wadsworth ME, Hoyt KL, Staley LA, Karch CM, Harari O, Cruchaga C, Ainscough BJ, Bales K, Pickering EH, Bertelsen S, et al. Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation. Plos Genetics. 10: e1004758. PMID 25340798 DOI: 10.1371/Journal.Pgen.1004758  0.72
2014 Ebbert MT, Wadsworth ME, Boehme KL, Hoyt KL, Sharp AR, O'Fallon BD, Kauwe JS, Ridge PG. Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files. Bmc Bioinformatics. 15: S12. PMID 25080132 DOI: 10.1186/1471-2105-15-S7-S12  0.72
2014 Sharp AR, Ridge PG, Bailey MH, Boehme KL, Norton MC, Tschanz JT, Munger RG, Corcoran CD, Kauwe JS. Population substructure in Cache County, Utah: the Cache County study. Bmc Bioinformatics. 15: S8. PMID 25078123 DOI: 10.1186/1471-2105-15-S7-S8  0.72
2014 Ridge PG, Maxwell TJ, Foutz SJ, Bailey MH, Corcoran CD, Tschanz JT, Norton MC, Munger RG, O'Brien E, Kerber RA, Cawthon RM, Kauwe JS. Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging. Bmc Bioinformatics. 15: S6. PMID 25077862 DOI: 10.1186/1471-2105-15-S7-S6  0.72
2014 Cruchaga C, Karch CM, Jin SC, Benitez BA, Cai Y, Guerreiro R, Harari O, Norton J, Budde J, Bertelsen S, Jeng AT, Cooper B, Skorupa T, Carrell D, Levitch D, ... ... Ridge PG, et al. Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer's disease. Nature. 505: 550-4. PMID 24336208 DOI: 10.1038/Nature12825  0.72
2014 Ebbert MT, Ridge PG, Wilson AR, Sharp AR, Bailey M, Norton MC, Tschanz JT, Munger RG, Corcoran CD, Kauwe JS. Population-based analysis of Alzheimer's disease risk alleles implicates genetic interactions. Biological Psychiatry. 75: 732-7. PMID 23954108 DOI: 10.1016/J.Biopsych.2013.07.008  0.72
2014 Bodily PM, Clement MJ, Snell Q, Fujimoto MS, Ridge PG. Haplotype-centered mapping for improved alignments and genetic association studies Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 499-505. DOI: 10.1145/2649387.2649435  0.72
2013 Ridge PG, Mukherjee S, Crane PK, Kauwe JS. Alzheimer's disease: analyzing the missing heritability. Plos One. 8: e79771. PMID 24244562 DOI: 10.1371/Journal.Pone.0079771  0.72
2013 Chen K, Coonrod EM, Kumánovics A, Franks ZF, Durtschi JD, Margraf RL, Wu W, Heikal NM, Augustine NH, Ridge PG, Hill HR, Jorde LB, Weyrich AS, Zimmerman GA, Gundlapalli AV, et al. Germline mutations in NFKB2 implicate the noncanonical NF-κB pathway in the pathogenesis of common variable immunodeficiency. American Journal of Human Genetics. 93: 812-24. PMID 24140114 DOI: 10.1016/J.Ajhg.2013.09.009  0.72
2013 Kauwe JS, Ridge PG, Foster NL, Cannon-Albright LA. Strong evidence for a genetic contribution to late-onset Alzheimer's disease mortality: a population-based study. Plos One. 8: e77087. PMID 24116205 DOI: 10.1371/Journal.Pone.0077087  0.72
2013 Ridge PG, Koop A, Maxwell TJ, Bailey MH, Swerdlow RH, Kauwe JS, Honea RA. Mitochondrial haplotypes associated with biomarkers for Alzheimer's disease. Plos One. 8: e74158. PMID 24040196 DOI: 10.1371/Journal.Pone.0074158  0.72
2013 Ridge PG, Ebbert MT, Kauwe JS. Genetics of Alzheimer's disease. Biomed Research International. 2013: 254954. PMID 23984328 DOI: 10.1155/2013/254954  0.72
2013 Ridge PG, Miller C, Bayrak-Toydemir P, Best DH, Mao R, Swensen JJ, Lyon E, Voelkerding KV. Cystic fibrosis testing in a referral laboratory: results and lessons from a six-year period. Journal of Clinical Bioinformatics. 3: 3. PMID 23343000 DOI: 10.1186/2043-9113-3-3  0.72
2012 Wooderchak-Donahue WL, O'Fallon B, Furtado LV, Durtschi JD, Plant P, Ridge PG, Rope AF, Yetman AT, Bayrak-Toydemir P. A direct comparison of next generation sequencing enrichment methods using an aortopathy gene panel- clinical diagnostics perspective. Bmc Medical Genomics. 5: 50. PMID 23148498 DOI: 10.1186/1755-8794-5-50  0.72
2012 Ridge PG, Maxwell TJ, Corcoran CD, Norton MC, Tschanz JT, O'Brien E, Kerber RA, Cawthon RM, Munger RG, Kauwe JS. Mitochondrial genomic analysis of late onset Alzheimer's disease reveals protective haplogroups H6A1A/H6A1B: the Cache County Study on Memory in Aging. Plos One. 7: e45134. PMID 23028804 DOI: 10.1371/Journal.Pone.0045134  0.72
2012 Crockett DK, Ridge PG, Wilson AR, Lyon E, Williams MS, Narus SP, Facelli JC, Mitchell JA. Consensus: a framework for evaluation of uncertain gene variants in laboratory test reporting. Genome Medicine. 4: 48. PMID 22640420 DOI: 10.1186/Gm347  0.72
2012 Mariotti M, Ridge PG, Zhang Y, Lobanov AV, Pringle TH, Guigo R, Hatfield DL, Gladyshev VN. Composition and evolution of the vertebrate and mammalian selenoproteomes. Plos One. 7: e33066. PMID 22479358 DOI: 10.1371/Journal.Pone.0033066  0.72
2011 Simmon KE, Brown-Elliott BA, Ridge PG, Durtschi JD, Mann LB, Slechta ES, Steigerwalt AG, Moser BD, Whitney AM, Brown JM, Voelkerding KV, McGowan KL, Reilly AF, Kirn TJ, Butler WR, et al. Mycobacterium chelonae-abscessus complex associated with sinopulmonary disease, Northeastern USA. Emerging Infectious Diseases. 17: 1692-700. PMID 21888796 DOI: 10.3201/Eid1709.101667  0.72
2011 Cruchaga C, Nowotny P, Kauwe JS, Ridge PG, Mayo K, Bertelsen S, Hinrichs A, Fagan AM, Holtzman DM, Morris JC, Goate AM. Association and expression analyses with single-nucleotide polymorphisms in TOMM40 in Alzheimer disease. Archives of Neurology. 68: 1013-9. PMID 21825236 DOI: 10.1001/Archneurol.2011.155  0.72
2011 Crockett DK, Piccolo SR, Ridge PG, Margraf RL, Lyon E, Williams MS, Mitchell JA. Predicting phenotypic severity of uncertain gene variants in the RET proto-oncogene. Plos One. 6: e18380. PMID 21479187 DOI: 10.1371/Journal.Pone.0018380  0.72
2010 Ridge PG, Crockett DK. Feature selection for characterizing HLA class i peptide motif anchors 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 644-645. DOI: 10.1145/1854776.1854896  0.72
2010 Crockett DK, Ridge PG. A novel representation of HLA allele specificity and prediction algorithm for HLA class i binding 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 642-643. DOI: 10.1145/1854776.1854895  0.72
2008 Ridge PG, Zhang Y, Gladyshev VN. Comparative genomic analyses of copper transporters and cuproproteomes reveal evolutionary dynamics of copper utilization and its link to oxygen. Plos One. 3: e1378. PMID 18167539 DOI: 10.1371/Journal.Pone.0001378  0.72
2007 Carroll HD, Ridge PG, Clement MJ, Snell QO. Phylogenies scores for exhaustive searches and parsimony scores searches. International Journal of Bioinformatics Research and Applications. 3: 493-503. PMID 18048315 DOI: 10.1504/Ijbra.2007.015417  0.72
2006 Ridge P, Carroll H, Sneddon D, Clement M, Snell Q. Large grain size stochastic optimization alignment Proceedings - Sixth Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2006. 127-134. DOI: 10.1109/BIBE.2006.253325  0.72
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