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Ao Ma, Ph.D. - Publications

Affiliations: 
2003 Brown University, Providence, RI 
Area:
theoretical understanding of dynamics in liquids
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Stewman SF, Tsui KK, Ma A. Dynamic Instability from Non-equilibrium Structural Transitions on the Energy Landscape of Microtubule. Cell Systems. PMID 33086051 DOI: 10.1016/j.cels.2020.09.008  0.764
2016 Li W, Ma A. A benchmark for reaction coordinates in the transition path ensemble. The Journal of Chemical Physics. 144: 134104. PMID 27059559 DOI: 10.1063/1.4945337  0.316
2016 Li W, Ma A. Reaction mechanism and reaction coordinates from the viewpoint of energy flow. The Journal of Chemical Physics. 144: 114103. PMID 27004858 DOI: 10.1063/1.4943581  0.316
2015 Li W, Ma A. Some studies on generalized coordinate sets for polyatomic molecules. The Journal of Chemical Physics. 143: 224103. PMID 26671354 DOI: 10.1063/1.4936773  0.374
2015 Deng YQ, Zhao H, Ma AL, Zhou JY, Xie SB, Zhang XQ, Zhang DZ, Xie Q, Zhang G, Shang J, Cheng J, Zhao WF, Zou ZQ, Zhang MX, Wang GQ, et al. Selected Cytokines Serve as Potential Biomarkers for Predicting Liver Inflammation and Fibrosis in Chronic Hepatitis B Patients With Normal to Mildly Elevated Aminotransferases. Medicine. 94: e2003. PMID 26559292 DOI: 10.1097/MD.0000000000002003  0.319
2013 Solinet S, Mahmud K, Stewman SF, Ben El Kadhi K, Decelle B, Talje L, Ma A, Kwok BH, Carreno S. The actin-binding ERM protein Moesin binds to and stabilizes microtubules at the cell cortex. The Journal of Cell Biology. 202: 251-60. PMID 23857773 DOI: 10.1083/Jcb.201304052  0.739
2012 Mukherjee S, Diaz Valencia JD, Stewman S, Metz J, Monnier S, Rath U, Asenjo AB, Charafeddine RA, Sosa HJ, Ross JL, Ma A, Sharp DJ. Human Fidgetin is a microtubule severing the enzyme and minus-end depolymerase that regulates mitosis. Cell Cycle (Georgetown, Tex.). 11: 2359-66. PMID 22672901 DOI: 10.4161/Cc.20849  0.739
2011 Currie JD, Stewman S, Schimizzi G, Slep KC, Ma A, Rogers SL. The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics. Molecular Biology of the Cell. 22: 4343-61. PMID 21965297 DOI: 10.1091/Mbc.E11-06-0520  0.758
2011 Zhang D, Grode KD, Stewman SF, Diaz-Valencia JD, Liebling E, Rath U, Riera T, Currie JD, Buster DW, Asenjo AB, Sosa HJ, Ross JL, Ma A, Rogers SL, Sharp DJ. Drosophila katanin is a microtubule depolymerase that regulates cortical-microtubule plus-end interactions and cell migration. Nature Cell Biology. 13: 361-70. PMID 21378981 DOI: 10.1038/Ncb2206  0.746
2009 Mennella V, Tan DY, Buster DW, Asenjo AB, Rath U, Ma A, Sosa HJ, Sharp DJ. Motor domain phosphorylation and regulation of the Drosophila kinesin 13, KLP10A. The Journal of Cell Biology. 186: 481-90. PMID 19687256 DOI: 10.1083/Jcb.200902113  0.379
2009 Wainman A, Buster DW, Duncan T, Metz J, Ma A, Sharp D, Wakefield JG. A new Augmin subunit, Msd1, demonstrates the importance of mitotic spindle-templated microtubule nucleation in the absence of functioning centrosomes. Genes & Development. 23: 1876-81. PMID 19684111 DOI: 10.1101/Gad.532209  0.428
2009 Fernandez N, Chang Q, Buster DW, Sharp DJ, Ma A. A model for the regulatory network controlling the dynamics of kinetochore microtubule plus-ends and poleward flux in metaphase. Proceedings of the National Academy of Sciences of the United States of America. 106: 7846-51. PMID 19416899 DOI: 10.1073/Pnas.0813228106  0.455
2009 Li Y, Qu X, Ma A, Smith GJ, Scherer NF, Dinner AR. Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding. The Journal of Physical Chemistry. B. 113: 7579-90. PMID 19415919 DOI: 10.1021/Jp900225Q  0.569
2008 Hu J, Ma A, Dinner AR. A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT. Proceedings of the National Academy of Sciences of the United States of America. 105: 4615-20. PMID 18353991 DOI: 10.1073/Pnas.0708058105  0.53
2007 Zhang M, Gong J, Ma A, Rice SA. Infrared multiphoton induced isomerization and dissociation of FCN, ClCN, and BrCN in liquid Ar: a classical simulation study. The Journal of Chemical Physics. 127: 144501. PMID 17935403 DOI: 10.1063/1.2772620  0.364
2006 Ma A, Hu J, Karplus M, Dinner AR. Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved. Biochemistry. 45: 13687-96. PMID 17105188 DOI: 10.1021/Bi061061Y  0.609
2006 Hu J, Ma A, Dinner AR. Bias annealing: a method for obtaining transition paths de novo. The Journal of Chemical Physics. 125: 114101. PMID 16999460 DOI: 10.1063/1.2335640  0.585
2006 Ma A, Nag A, Dinner AR. Dynamic coupling between coordinates in a model for biomolecular isomerization. The Journal of Chemical Physics. 124: 144911. PMID 16626249 DOI: 10.1063/1.2183768  0.572
2006 Hu J, Ma A, Dinner AR. Monte Carlo simulations of biomolecules: The MC module in CHARMM. Journal of Computational Chemistry. 27: 203-16. PMID 16323162 DOI: 10.1002/Jcc.20327  0.543
2005 Ma A, Dinner AR. Automatic method for identifying reaction coordinates in complex systems. The Journal of Physical Chemistry. B. 109: 6769-79. PMID 16851762 DOI: 10.1021/Jp045546C  0.557
2005 Gong J, Ma A, Rice SA. Controlled subnanosecond isomerization of HCN to CNH in solution. The Journal of Chemical Physics. 122: 204505. PMID 15945750 DOI: 10.1063/1.1913398  0.307
2005 Gong J, Ma A, Rice SA. Isomerization and dissociation dynamics of HCN in a picosecond infrared laser field: a full-dimensional classical study. The Journal of Chemical Physics. 122: 144311. PMID 15847526 DOI: 10.1063/1.1871893  0.363
2004 Ma A, Stratt RM. Multiphonon vibrational relaxation in liquids: should it lead to an exponential-gap law? The Journal of Chemical Physics. 121: 11217-26. PMID 15634077 DOI: 10.1063/1.1819873  0.609
2003 Ma A, Stratt RM. What Do We Learn from Two-Dimensional Raman Spectra by Varying the Polarization Conditions? Bulletin of the Korean Chemical Society. 24: 1126-1134. DOI: 10.5012/Bkcs.2003.24.8.1126  0.623
2003 Ma A, Stratt RM. Selecting the information content of two-dimensional Raman spectra in liquids Journal of Chemical Physics. 119: 8500-8510. DOI: 10.1063/1.1611873  0.633
2003 Ma A, Stratt RM. Multiphonon vibrational relaxation in liquids: An exploration of the idea and of the problems it causes for molecular dynamics algorithms Journal of Chemical Physics. 119: 6709-6718. DOI: 10.1063/1.1605735  0.605
2002 Ma A, Stratt RM. The molecular origins of the two-dimensional Raman spectrum of an atomic liquid. II. Instantaneous-normal-mode theory Journal of Chemical Physics. 116: 4972-4984. DOI: 10.1063/1.1453402  0.637
2002 Ma A, Stratt RM. The molecular origins of the two-dimensional Raman spectrum of an atomic liquid. I. Molecular dynamics simulation Journal of Chemical Physics. 116: 4962-4971. DOI: 10.1063/1.1453401  0.645
2000 Ma A, Stratt RM. Fifth-order raman spectrum of an atomic liquid: simulation and instantaneous-normal-mode calculation Physical Review Letters. 85: 1004-7. PMID 10991460 DOI: 10.1103/Physrevlett.85.1004  0.618
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