Erich David Jarvis - Publications

Affiliations: 
Duke University, Durham, NC 
Area:
Vocal learning
Website:
http://www.jarvislab.net/

135 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Formenti G, Theissinger K, Fernandes C, Bista I, Bombarely A, Bleidorn C, Ciofi C, Crottini A, Godoy JA, Höglund J, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, ... ... Jarvis ED, et al. The era of reference genomes in conservation genomics. Trends in Ecology & Evolution. PMID 35086739 DOI: 10.1016/j.tree.2021.11.008  0.772
2021 Tobari Y, Theofanopoulou C, Mori C, Sato Y, Marutani M, Fujioka S, Konno N, Suzuki K, Furutani A, Hakataya S, Yao CT, Yang EY, Tsai CR, Tang PC, Chen CF, ... ... Jarvis ED, et al. Oxytocin variation and brain region-specific gene expression in a domesticated avian species. Genes, Brain, and Behavior. e12780. PMID 34854547 DOI: 10.1111/gbb.12780  0.807
2021 Cahill JA, Armstrong J, Deran A, Khoury CJ, Paten B, Haussler D, Jarvis ED. Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans. Genome Research. 31: 2035-2049. PMID 34667117 DOI: 10.1101/gr.275989.121  0.341
2021 Tchernichovski O, Eisenberg-Edidin S, Jarvis ED. Balanced imitation sustains song culture in zebra finches. Nature Communications. 12: 2562. PMID 33963187 DOI: 10.1038/s41467-021-22852-3  0.665
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Jarvis ED, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  0.775
2021 Theofanopoulou C, Gedman G, Cahill JA, Boeckx C, Jarvis ED. Universal nomenclature for oxytocin-vasotocin ligand and receptor families. Nature. 592: 747-755. PMID 33911268 DOI: 10.1038/s41586-020-03040-7  0.792
2021 Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, ... ... Jarvis ED, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature. PMID 33910227 DOI: 10.1038/s41586-021-03535-x  0.677
2021 Choe HN, Jarvis ED. The role of sex chromosomes and sex hormones in vocal learning systems. Hormones and Behavior. 132: 104978. PMID 33895570 DOI: 10.1016/j.yhbeh.2021.104978  0.713
2021 Gedman G, Haase B, Durieux G, Biegler MT, Fedrigo O, Jarvis ED. As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions. The Journal of Comparative Neurology. PMID 33871048 DOI: 10.1002/cne.25159  0.819
2021 Biegler MT, Cantin LJ, Scarano DL, Jarvis ED. Controlling for activity-dependent genes and behavioral states is critical for determining brain relationships within and across species. The Journal of Comparative Neurology. PMID 33855704 DOI: 10.1002/cne.25157  0.805
2021 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Jarvis ED, et al. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. PMID 33833441 DOI: 10.1038/s41586-021-03473-8  0.73
2021 Choe HN, Tewari J, Zhu KW, Davenport M, Matsunami H, Jarvis ED. Estrogen and sex-dependent loss of the vocal learning system in female zebra finches. Hormones and Behavior. 104911. PMID 33422557 DOI: 10.1016/j.yhbeh.2020.104911  0.755
2020 Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Jarvis ED, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9  0.767
2020 Jebb D, Huang Z, Pippel M, Hughes GM, Lavrichenko K, Devanna P, Winkler S, Jermiin LS, Skirmuntt EC, Katzourakis A, Burkitt-Gray L, Ray DA, Sullivan KAM, Roscito JG, Kirilenko BM, ... ... Jarvis ED, et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature. 583: 578-584. PMID 32699395 DOI: 10.1038/S41586-020-2486-3  0.426
2020 Ksepka DT, Balanoff AM, Smith NA, Bever GS, Bhullar BS, Bourdon E, Braun EL, Burleigh JG, Clarke JA, Colbert MW, Corfield JR, Degrange FJ, De Pietri VL, Early CM, Field DJ, ... ... Jarvis ED, et al. Tempo and Pattern of Avian Brain Size Evolution. Current Biology : Cb. PMID 32330422 DOI: 10.1016/J.Cub.2020.03.060  0.333
2020 da Fonseca RR, Couto A, Machado AM, Brejova B, Albertin CB, Silva F, Gardner P, Baril T, Hayward A, Campos A, Ribeiro ÂM, Barrio-Hernandez I, Hoving HJ, Tafur-Jimenez R, Chu C, ... ... Jarvis E, et al. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience. 9. PMID 31942620 DOI: 10.1093/Gigascience/Giz152  0.363
2020 Morin PA, Alexander A, Blaxter M, Caballero S, Fedrigo O, Fontaine MC, Foote AD, Kuraku S, Maloney B, McCarthy ML, McGowen MR, Mountcastle J, Nery MF, Olsen MT, Rosel PE, ... Jarvis ED, et al. Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species Marine Mammal Science. DOI: 10.1111/Mms.12721  0.368
2019 Campana MG, Corvelo A, Shelton J, Callicrate TE, Bunting KL, Riley-Gillis B, Wos F, DeGrazia J, Jarvis ED, Fleischer RC. Adaptive Radiation Genomics of Two Ecologically Divergent Hawai'ian Honeycreepers: The 'akiapōlā'au and the Hawai'i 'amakihi. The Journal of Heredity. PMID 31723957 DOI: 10.1093/Jhered/Esz057  0.402
2019 Jarvis ED. Evolution of vocal learning and spoken language. Science (New York, N.Y.). 366: 50-54. PMID 31604300 DOI: 10.1126/science.aax0287  0.338
2019 Jung KM, Kim YM, Keyte AL, Biegler MT, Rengaraj D, Lee HJ, Mello CV, Velho TAF, Fedrigo O, Haase B, Jarvis ED, Han JY. Identification and characterization of primordial germ cells in a vocal learning Neoaves species, the zebra finch. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201900760RR. PMID 31604057 DOI: 10.1096/Fj.201900760Rr  0.536
2019 Borges R, Fonseca J, Gomes C, Johnson WE, O'brien SJ, Zhang G, Gilbert MTP, Jarvis ED, Antunes A. Avian binocularity and adaptation to nocturnal environments: genomic insights from a highly-derived visual phenotype. Genome Biology and Evolution. PMID 31386143 DOI: 10.1093/Gbe/Evz111  0.324
2018 Wirthlin M, Lima NCB, Guedes RLM, Soares AER, Almeida LGP, Cavaleiro NP, Loss de Morais G, Chaves AV, Howard JT, Teixeira MM, Schneider PN, Santos FR, Schatz MC, Felipe MS, Miyaki CY, ... ... Jarvis ED, et al. Parrot Genomes and the Evolution of Heightened Longevity and Cognition. Current Biology : Cb. PMID 30528582 DOI: 10.1016/J.Cub.2018.10.050  0.803
2018 Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, et al. Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America. 115: 4325-4333. PMID 29686065 DOI: 10.1073/Pnas.1720115115  0.333
2018 Audet JN, Kayello L, Ducatez S, Perillo S, Cauchard L, Howard JT, O'Connell LA, Jarvis ED, Lefebvre L. Divergence in problem-solving skills is associated with differential expression of glutamate receptors in wild finches. Science Advances. 4: eaao6369. PMID 29546239 DOI: 10.1126/sciadv.aao6369  0.64
2017 Korlach J, Gedman G, Kingan SB, Chin CS, Howard JT, Audet JN, Cantin L, Jarvis ED. De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads. Gigascience. 6: 1-16. PMID 29020750 DOI: 10.1093/Gigascience/Gix085  0.786
2017 Theofanopoulou C, Boeckx C, Jarvis ED. A hypothesis on a role of oxytocin in the social mechanisms of speech and vocal learning. Proceedings. Biological Sciences. 284. PMID 28835557 DOI: 10.1098/Rspb.2017.0988  0.785
2017 Lei H, Yan Z, Sun X, Zhang Y, Wang J, Ma C, Xu Q, Wang R, Jarvis ED, Sun Z. Axon guidance pathways served as common targets for human speech/language evolution and related disorders. Brain and Language. 174: 1-8. PMID 28692932 DOI: 10.1016/j.bandl.2017.06.007  0.404
2017 Chakraborty M, Chen LF, Fridel EE, Klein ME, Senft RA, Sarkar A, Jarvis ED. Overexpression of human NR2B receptor subunit in LMAN causes stuttering and song sequence changes in adult zebra finches. Scientific Reports. 7: 942. PMID 28432288 DOI: 10.1038/S41598-017-00519-8  0.382
2016 Chabout J, Sarkar A, Patel SR, Radden T, Dunson DB, Fisher SE, Jarvis ED. A Foxp2 Mutation Implicated in Human Speech Deficits Alters Sequencing of Ultrasonic Vocalizations in Adult Male Mice. Frontiers in Behavioral Neuroscience. 10: 197. PMID 27812326 DOI: 10.3389/Fnbeh.2016.00197  0.341
2016 Farré M, Narayan J, Slavov GT, Damas J, Auvil L, Li C, Jarvis ED, Burt DW, Griffin DK, Larkin DM. Novel insights into chromosome evolution in birds, archosaurs, and reptiles. Genome Biology and Evolution. PMID 27401172 DOI: 10.1093/gbe/evw166  0.41
2016 Almeida D, Maldonado E, Khan I, Silva L, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds. Genome Biology and Evolution. PMID 26979796 DOI: 10.1093/Gbe/Evw041  0.36
2016 Jarvis ED. Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class. Annual Review of Animal Biosciences. 4: 45-59. PMID 26884102 DOI: 10.1146/annurev-animal-021815-111216  0.395
2015 Chakraborty M, Jarvis ED. Brain evolution by brain pathway duplication. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26554045 DOI: 10.1098/Rstb.2015.0056  0.412
2015 Haug-Baltzell A, Jarvis ED, McCarthy FM, Lyons E. Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates. Frontiers in Neuroscience. 9: 361. PMID 26500483 DOI: 10.3389/Fnins.2015.00361  0.32
2015 Borges R, Khan I, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds. Bmc Genomics. 16: 751. PMID 26438339 DOI: 10.1186/S12864-015-1924-3  0.375
2015 Arriaga G, Macopson JJ, Jarvis ED. Transsynaptic Tracing from Peripheral Targets with Pseudorabies Virus Followed by Cholera Toxin and Biotinylated Dextran Amines Double Labeling. Journal of Visualized Experiments : Jove. PMID 26436639 DOI: 10.3791/50672  0.784
2015 Khan I, Yang Z, Maldonado E, Li C, Zhang G, Gilbert MT, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Olfactory receptor subgenomes linked with broad ecological adaptations in Sauropsida. Molecular Biology and Evolution. PMID 26219582 DOI: 10.1093/Molbev/Msv155  0.358
2015 Ribeiro ÂM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MT, da Fonseca RR. A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis. Bmc Evolutionary Biology. 15: 124. PMID 26123414 DOI: 10.1186/s12862-015-0409-y  0.311
2015 Chakraborty M, Walløe S, Nedergaard S, Fridel EE, Dabelsteen T, Pakkenberg B, Bertelsen MF, Dorrestein GM, Brauth SE, Durand SE, Jarvis ED. Core and Shell Song Systems Unique to the Parrot Brain. Plos One. 10: e0118496. PMID 26107173 DOI: 10.1371/Journal.Pone.0118496  0.434
2015 Chabout J, Sarkar A, Dunson DB, Jarvis ED. Male mice song syntax depends on social contexts and influences female preferences. Frontiers in Behavioral Neuroscience. 9: 76. PMID 25883559 DOI: 10.3389/Fnbeh.2015.00076  0.301
2015 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1  0.65
2015 Eöry L, Gilbert MT, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis E, Flicek P, Burt DW. Avianbase: a community resource for bird genomics. Genome Biology. 16: 21. PMID 25723810 DOI: 10.1186/S13059-015-0588-2  0.352
2015 Wang R, Chen CC, Hara E, Rivas MV, Roulhac PL, Howard JT, Chakraborty M, Audet JN, Jarvis ED. Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners. The Journal of Comparative Neurology. 523: 892-906. PMID 25424606 DOI: 10.1002/Cne.23719  0.692
2014 Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Jarvis ED, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27  0.373
2014 Zhang G, Li B, Li C, Gilbert MT, Jarvis ED, Wang J. Comparative genomic data of the Avian Phylogenomics Project. Gigascience. 3: 26. PMID 25671091 DOI: 10.1186/2047-217X-3-26  0.369
2014 Pereira J, Johnson WE, O'Brien SJ, Jarvis ED, Zhang G, Gilbert MT, Vasconcelos V, Antunes A. Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates. Plos One. 9: e74132. PMID 25549322 DOI: 10.1371/Journal.Pone.0074132  0.425
2014 Pfenning AR, Hara E, Whitney O, Rivas MV, Wang R, Roulhac PL, Howard JT, Wirthlin M, Lovell PV, Ganapathy G, Mouncastle J, Moseley MA, Thompson JW, Soderblom EJ, Iriki A, ... ... Jarvis ED, et al. Convergent transcriptional specializations in the brains of humans and song-learning birds. Science (New York, N.Y.). 346: 1256846. PMID 25504733 DOI: 10.1126/Science.1256846  0.812
2014 Whitney O, Pfenning AR, Howard JT, Blatti CA, Liu F, Ward JM, Wang R, Audet JN, Kellis M, Mukherjee S, Sinha S, Hartemink AJ, West AE, Jarvis ED. Core and region-enriched networks of behaviorally regulated genes and the singing genome. Science (New York, N.Y.). 346: 1256780. PMID 25504732 DOI: 10.1126/Science.1256780  0.806
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, ... ... Jarvis ED, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449  0.66
2014 Meredith RW, Zhang G, Gilbert MT, Jarvis ED, Springer MS. Evidence for a single loss of mineralized teeth in the common avian ancestor. Science (New York, N.Y.). 346: 1254390. PMID 25504730 DOI: 10.1126/Science.1254390  0.348
2014 Zhou Q, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MT, Zhang G. Complex evolutionary trajectories of sex chromosomes across bird taxa. Science (New York, N.Y.). 346: 1246338. PMID 25504727 DOI: 10.1126/Science.1246338  0.336
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451  0.781
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... ... Jarvis ED, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385  0.81
2014 Zhang G, Jarvis ED, Gilbert MT. Avian genomes. A flock of genomes. Introduction. Science (New York, N.Y.). 346: 1308-9. PMID 25504710 DOI: 10.1126/Science.346.6215.1308  0.314
2014 Li S, Li B, Cheng C, Xiong Z, Liu Q, Lai J, Carey HV, Zhang Q, Zheng H, Wei S, Zhang H, Chang L, Liu S, Zhang S, Yu B, ... ... Jarvis ED, et al. Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species. Genome Biology. 15: 557. PMID 25496777 DOI: 10.1186/S13059-014-0557-1  0.367
2014 Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, et al. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. Bmc Genomics. 15: 1060. PMID 25496766 DOI: 10.1186/1471-2164-15-1060  0.387
2014 Weber CC, Boussau B, Romiguier J, Jarvis ED, Ellegren H. Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition. Genome Biology. 15: 549. PMID 25496599 DOI: 10.1186/S13059-014-0549-1  0.309
2014 Cui J, Zhao W, Huang Z, Jarvis ED, Gilbert MT, Walker PJ, Holmes EC, Zhang G. Low frequency of paleoviral infiltration across the avian phylogeny. Genome Biology. 15: 539. PMID 25496498 DOI: 10.1186/S13059-014-0539-3  0.365
2014 Callicrate T, Dikow R, Thomas JW, Mullikin JC, Jarvis ED, Fleischer RC. Genomic resources for the endangered Hawaiian honeycreepers. Bmc Genomics. 15: 1098. PMID 25496081 DOI: 10.1186/1471-2164-15-1098  0.356
2014 Wirthlin M, Lovell PV, Jarvis ED, Mello CV. Comparative genomics reveals molecular features unique to the songbird lineage. Bmc Genomics. 15: 1082. PMID 25494627 DOI: 10.1186/1471-2164-15-1082  0.719
2014 Kubikova L, Bosikova E, Cvikova M, Lukacova K, Scharff C, Jarvis ED. Basal ganglia function, stuttering, sequencing, and repair in adult songbirds. Scientific Reports. 4: 6590. PMID 25307086 DOI: 10.1038/srep06590  0.799
2014 Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, ... ... Jarvis ED, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11  0.668
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. Brain, Behavior and Evolution. 83: 1-8. PMID 24603302 DOI: 10.1159/000360152  0.374
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. The Journal of Comparative Neurology. 522: 1445-53. PMID 24596113 DOI: 10.1002/Cne.23568  0.374
2013 Rosselló RA, Chen CC, Dai R, Howard JT, Hochgeschwender U, Jarvis ED. Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species. Elife. 2: e00036. PMID 24015354 DOI: 10.7554/eLife.00036  0.591
2013 Smulders TV, Jarvis ED. Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location. Neurobiology of Learning and Memory. 106: 163-76. PMID 23999220 DOI: 10.1016/j.nlm.2013.08.010  0.621
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Jarvis ED, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.637
2013 Liu WC, Wada K, Jarvis ED, Nottebohm F. Rudimentary substrates for vocal learning in a suboscine. Nature Communications. 4: 2082. PMID 23823977 DOI: 10.1038/Ncomms3082  0.812
2013 Chen CC, Winkler CM, Pfenning AR, Jarvis ED. Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities. The Journal of Comparative Neurology. 521: 3666-701. PMID 23818174 DOI: 10.1002/Cne.23406  0.761
2013 Jarvis ED, Yu J, Rivas MV, Horita H, Feenders G, Whitney O, Jarvis SC, Jarvis ER, Kubikova L, Puck AE, Siang-Bakshi C, Martin S, McElroy M, Hara E, Howard J, et al. Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns. The Journal of Comparative Neurology. 521: 3614-65. PMID 23818122 DOI: 10.1002/Cne.23404  0.767
2013 Parchman TL, Gompert Z, Braun MJ, Brumfield RT, McDonald DB, Uy JA, Zhang G, Jarvis ED, Schlinger BA, Buerkle CA. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins. Molecular Ecology. 22: 3304-17. PMID 23441849 DOI: 10.1111/Mec.12201  0.367
2013 Arriaga G, Jarvis ED. Mouse vocal communication system: are ultrasounds learned or innate? Brain and Language. 124: 96-116. PMID 23295209 DOI: 10.1016/J.Bandl.2012.10.002  0.807
2013 Rosselló RA, Chen C, Dai R, Howard JT, Hochgeschwender U, Jarvis ED. Author response: Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species Elife. DOI: 10.7554/Elife.00036.023  0.603
2013 Wada K, Chen CC, Jarvis ED. Detecting neural activity-dependent immediate early gene expression in the brain Methods in Neuroethological Research. 133-149. DOI: 10.1007/978-4-431-54331-2_9  0.658
2012 Arriaga G, Zhou EP, Jarvis ED. Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds. Plos One. 7: e46610. PMID 23071596 DOI: 10.1371/Journal.Pone.0046610  0.796
2012 Petkov CI, Jarvis ED. Birds, primates, and spoken language origins: behavioral phenotypes and neurobiological substrates. Frontiers in Evolutionary Neuroscience. 4: 12. PMID 22912615 DOI: 10.3389/fnevo.2012.00012  0.363
2012 Horita H, Kobayashi M, Liu WC, Oka K, Jarvis ED, Wada K. Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds. Plos One. 7: e42173. PMID 22876306 DOI: 10.1371/journal.pone.0042173  0.798
2012 Chen CC, Balaban E, Jarvis ED. Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes. Plos One. 7: e42477. PMID 22860132 DOI: 10.1371/journal.pone.0042477  0.39
2012 Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology. 30: 693-700. PMID 22750884 DOI: 10.1038/Nbt.2280  0.62
2012 Chen CC, Wada K, Jarvis ED. Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue. Journal of Visualized Experiments : Jove. PMID 22566072 DOI: 10.3791/3764  0.673
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... Jarvis ED, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/Gb-2012-13-1-415  0.637
2012 Simonyan K, Horwitz B, Jarvis ED. Dopamine regulation of human speech and bird song: a critical review. Brain and Language. 122: 142-50. PMID 22284300 DOI: 10.1016/J.Bandl.2011.12.009  0.314
2012 Hara E, Rivas MV, Ward JM, Okanoya K, Jarvis ED. Convergent differential regulation of parvalbumin in the brains of vocal learners. Plos One. 7: e29457. PMID 22238614 DOI: 10.1371/journal.pone.0029457  0.463
2011 Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H. Dynamic evolution of base composition: causes and consequences in avian phylogenomics. Molecular Biology and Evolution. 28: 2197-210. PMID 21393604 DOI: 10.1093/Molbev/Msr047  0.473
2011 KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x  0.766
2010 Nabholz B, Jarvis ED, Ellegren H. Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny. Molecular Phylogenetics and Evolution. 57: 466-70. PMID 20601014 DOI: 10.1016/J.Ympev.2010.06.009  0.372
2010 Horita H, Wada K, Rivas MV, Hara E, Jarvis ED. The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons. The Journal of Comparative Neurology. 518: 2873-901. PMID 20506480 DOI: 10.1002/cne.22370  0.746
2010 Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/Nature08819  0.816
2010 Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Molecular Ecology. 19: 266-76. PMID 20331785 DOI: 10.1111/J.1365-294X.2009.04487.X  0.791
2010 Kubikova L, Wada K, Jarvis ED. Dopamine receptors in a songbird brain. The Journal of Comparative Neurology. 518: 741-69. PMID 20058221 DOI: 10.1002/cne.22255  0.785
2010 Horita H, Kobayashi M, Oka K, Jarvis E, Wada K. Specialized motor-driven dusp1 expression in song nuclei of vocal learning birds Neuroscience Research. 68: e179. DOI: 10.1016/j.neures.2010.07.2367  0.744
2009 Hara E, Kubikova L, Hessler NA, Jarvis ED. Assessing visual requirements for social context-dependent activation of the songbird song system. Proceedings. Biological Sciences / the Royal Society. 276: 279-89. PMID 18826930 DOI: 10.1098/rspb.2008.1138  0.762
2008 Horita H, Wada K, Jarvis ED. Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway. The European Journal of Neuroscience. 28: 2519-32. PMID 19087177 DOI: 10.1111/j.1460-9568.2008.06535.x  0.749
2008 Pinaud R, Osorio C, Alzate O, Jarvis ED. Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics. The European Journal of Neuroscience. 27: 1409-22. PMID 18364021 DOI: 10.1111/j.1460-9568.2008.06102.x  0.694
2008 Feenders G, Liedvogel M, Rivas M, Zapka M, Horita H, Hara E, Wada K, Mouritsen H, Jarvis ED. Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin. Plos One. 3: e1768. PMID 18335043 DOI: 10.1371/Journal.Pone.0001768  0.803
2007 Jarvis ED. Neural systems for vocal learning in birds and humans: a synopsis. Journal of Ornithology / Do-G. 148: 35-44. PMID 19684872 DOI: 10.1007/s10336-007-0243-0  0.378
2007 Hara E, Kubikova L, Hessler NA, Jarvis ED. Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context. The European Journal of Neuroscience. 25: 3406-16. PMID 17553009 DOI: 10.1111/j.1460-9568.2007.05600.x  0.775
2007 Kubikova L, Turner EA, Jarvis ED. The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway. The European Journal of Neuroscience. 25: 2145-60. PMID 17419760 DOI: 10.1111/j.1460-9568.2007.05368.x  0.778
2007 Liedvogel M, Feenders G, Wada K, Troje NF, Jarvis ED, Mouritsen H. Lateralized activation of Cluster N in the brains of migratory songbirds. The European Journal of Neuroscience. 25: 1166-73. PMID 17331212 DOI: 10.1111/J.1460-9568.2007.05350.X  0.766
2006 Ferreira AR, Smulders TV, Sameshima K, Mello CV, Jarvis ED. VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS). The Auk. 123: 1129-1148. PMID 18802498 DOI: 10.1642/0004-8038(2006)123[1129:Vaabot]2.0.Co;2  0.681
2006 Smith VA, Yu J, Smulders TV, Hartemink AJ, Jarvis ED. Computational inference of neural information flow networks. Plos Computational Biology. 2: e161. PMID 17121460 DOI: 10.1371/Journal.Pcbi.0020161  0.705
2006 Wada K, Howard JT, McConnell P, Whitney O, Lints T, Rivas MV, Horita H, Patterson MA, White SA, Scharff C, Haesler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, ... ... Jarvis ED, et al. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Proceedings of the National Academy of Sciences of the United States of America. 103: 15212-7. PMID 17018643 DOI: 10.1073/Pnas.0607098103  0.802
2006 JARVIS ED. Selection for and against vocal learning in birds and mammals Ornithological Science. 5: 5-14. DOI: 10.2326/osj.5.5  0.388
2006 Ferreira ARJ, Smulders TV, Sameshima K, Mello CV, Jarvis ED. Vocalizations and Associated Behaviors of the Sombre Hummingbird (Aphantochroa cirrhochloris) and the Rufous-Breasted Hermit (Glaucis hirsutus) (Vocalizaciones y Comportamientos Asociados de Aphantochroa cirrhochloris y Glaucis hirsutus) The Auk. 123: 1129-1148. DOI: 10.2307/25150225  0.662
2006 Ferreira ARJ, Smulders TV, Sameshima K, Mello CV, Jarvis ED. Vocalizations and associated behaviors of the sombre hummingbird (Aphantochroa cirrhochloris) and the rufous-breasted hermit (Glaucis hirsutus) Auk. 123: 1129-1148. DOI: 10.1642/0004-8038(2006)123[1129:VAABOT]2.0.CO;2  0.635
2005 Burmeister SS, Jarvis ED, Fernald RD. Rapid behavioral and genomic responses to social opportunity. Plos Biology. 3: e363. PMID 16216088 DOI: 10.1371/journal.pbio.0030363  0.378
2005 Mouritsen H, Feenders G, Liedvogel M, Wada K, Jarvis ED. Night-vision brain area in migratory songbirds. Proceedings of the National Academy of Sciences of the United States of America. 102: 8339-44. PMID 15928090 DOI: 10.1073/Pnas.0409575102  0.783
2005 Jarvis ED, Güntürkün O, Bruce L, Csillag A, Karten H, Kuenzel W, Medina L, Paxinos G, Perkel DJ, Shimizu T, Striedter G, Wild JM, Ball GF, Dugas-Ford J, Durand SE, et al. Avian brains and a new understanding of vertebrate brain evolution. Nature Reviews. Neuroscience. 6: 151-9. PMID 15685220 DOI: 10.1038/Nrn1606  0.785
2004 Reiner A, Perkel DJ, Bruce LL, Butler AB, Csillag A, Kuenzel W, Medina L, Paxinos G, Shimizu T, Striedter G, Wild M, Ball GF, Durand S, Gütürkün O, Lee DW, ... ... Jarvis ED, et al. The Avian Brain Nomenclature Forum: Terminology for a New Century in Comparative Neuroanatomy. The Journal of Comparative Neurology. 473: E1-E6. PMID 19626136 DOI: 10.1002/Cne.20119  0.793
2004 Jarvis ED. Learned birdsong and the neurobiology of human language. Annals of the New York Academy of Sciences. 1016: 749-77. PMID 15313804 DOI: 10.1196/annals.1298.038  0.406
2004 Reiner A, Perkel DJ, Mello CV, Jarvis ED. Songbirds and the revised avian brain nomenclature. Annals of the New York Academy of Sciences. 1016: 77-108. PMID 15313771 DOI: 10.1196/annals.1298.013  0.557
2004 Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED. Advances to Bayesian network inference for generating causal networks from observational biological data. Bioinformatics (Oxford, England). 20: 3594-603. PMID 15284094 DOI: 10.1093/Bioinformatics/Bth448  0.496
2004 Wada K, Sakaguchi H, Jarvis ED, Hagiwara M. Differential expression of glutamate receptors in avian neural pathways for learned vocalization. The Journal of Comparative Neurology. 476: 44-64. PMID 15236466 DOI: 10.1002/cne.20201  0.695
2004 Reiner A, Perkel DJ, Bruce LL, Butler AB, Csillag A, Kuenzel W, Medina L, Paxinos G, Shimizu T, Striedter G, Wild M, Ball GF, Durand S, Güntürkün O, Lee DW, ... ... Jarvis ED, et al. Revised nomenclature for avian telencephalon and some related brainstem nuclei. The Journal of Comparative Neurology. 473: 377-414. PMID 15116397 DOI: 10.1002/Cne.20118  0.794
2004 Haesler S, Wada K, Nshdejan A, Morrisey EE, Lints T, Jarvis ED, Scharff C. FoxP2 expression in avian vocal learners and non-learners. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 3164-75. PMID 15056696 DOI: 10.1523/Jneurosci.4369-03.2004  0.764
2003 Gustincich S, Batalov S, Beisel KW, Bono H, Carninci P, Fletcher CF, Grimmond S, Hirokawa N, Jarvis ED, Jegla T, Kawasawa Y, LeMieux J, Miki H, Raviola E, Teasdale RD, et al. Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Research. 13: 1395-401. PMID 12819138 DOI: 10.1101/Gr.1135303  0.387
2003 Smith VA, Jarvis ED, Hartemink AJ. Influence of network topology and data collection on network inference. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 164-75. PMID 12603026  0.449
2002 Ribeiro S, Mello CV, Velho T, Gardner TJ, Jarvis ED, Pavlides C. Induction of hippocampal long-term potentiation during waking leads to increased extrahippocampal zif-268 expression during ensuing rapid-eye-movement sleep. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 10914-23. PMID 12486186 DOI: 10.1523/Jneurosci.22-24-10914.2002  0.672
2002 Jarvis ED, Smith VA, Wada K, Rivas MV, McElroy M, Smulders TV, Carninci P, Hayashizaki Y, Dietrich F, Wu X, McConnell P, Yu J, Wang PP, Hartemink AJ, Lin S. A framework for integrating the songbird brain. Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. 188: 961-80. PMID 12471494 DOI: 10.1007/S00359-002-0358-Y  0.799
2002 Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Jarvis ED, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/Nature01266  0.33
2002 Smith VA, Jarvis ED, Hartemink AJ. Evaluating functional network inference using simulations of complex biological systems. Bioinformatics (Oxford, England). 18: S216-24. PMID 12169550  0.432
2000 Krebs CJ, Jarvis ED, Chan J, Lydon JP, Ogawa S, Pfaff DW. A membrane-associated progesterone-binding protein, 25-Dx, is regulated by progesterone in brain regions involved in female reproductive behaviors. Proceedings of the National Academy of Sciences of the United States of America. 97: 12816-21. PMID 11070092 DOI: 10.1073/pnas.97.23.12816  0.315
2000 Denisenko-Nehrbass NI, Jarvis E, Scharff C, Nottebohm F, Mello CV. Site-specific retinoic acid production in the brain of adult songbirds. Neuron. 27: 359-70. PMID 10985355 DOI: 10.1016/S0896-6273(00)00043-X  0.808
2000 Jarvis ED, Ribeiro S, da Silva ML, Ventura D, Vielliard J, Mello CV. Behaviourally driven gene expression reveals song nuclei in hummingbird brain. Nature. 406: 628-32. PMID 10949303 DOI: 10.1038/35020570  0.716
2000 Li XC, Jarvis ED, Alvarez-Borda B, Lim DA, Nottebohm F. A relationship between behavior, neurotrophin expression, and new neuron survival. Proceedings of the National Academy of Sciences of the United States of America. 97: 8584-9. PMID 10890902 DOI: 10.1073/Pnas.140222497  0.771
2000 Jarvis ED, Mello CV. Molecular mapping of brain areas involved in parrot vocal communication. The Journal of Comparative Neurology. 419: 1-31. PMID 10717637 DOI: 10.1002/(SICI)1096-9861(20000327)419:1<1::AID-CNE1>3.0.CO;2-M  0.603
1999 Mello IV, Jarvis ED. Chapter 2.2.2 Applying differential display to brain research Techniques in the Behavioral and Neural Sciences. 13: 200-211. DOI: 10.1016/S0921-0709(99)80019-4  0.359
1998 Jarvis ED, Scharff C, Grossman MR, Ramos JA, Nottebohm F. For whom the bird sings: context-dependent gene expression. Neuron. 21: 775-88. PMID 9808464 DOI: 10.1016/S0896-6273(00)80594-2  0.785
1997 Holzenberger M, Jarvis ED, Chong C, Grossman M, Nottebohm F, Scharff C. Selective expression of insulin-like growth factor II in the songbird brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 17: 6974-87. PMID 9278533 DOI: 10.1523/Jneurosci.17-18-06974.1997  0.764
1997 Mello CV, Jarvis ED, Denisenko N, Rivas M. Isolation of song-regulated genes in the brain of songbirds. Methods in Molecular Biology (Clifton, N.J.). 85: 205-17. PMID 9276326 DOI: 10.1385/0-89603-489-5:205  0.546
1997 Jarvis ED, Schwabl H, Ribeiro S, Mello CV. Brain gene regulation by territorial singing behavior in freely ranging songbirds. Neuroreport. 8: 2073-7. PMID 9223104 DOI: 10.1097/00001756-199705260-00052  0.692
1997 Jarvis ED, Nottebohm F. Motor-driven gene expression. Proceedings of the National Academy of Sciences of the United States of America. 94: 4097-102. PMID 9108111 DOI: 10.1073/pnas.94.8.4097  0.721
1995 Jarvis ED, Mello CV, Nottebohm F. Associative learning and stimulus novelty influence the song-induced expression of an immediate early gene in the canary forebrain. Learning & Memory (Cold Spring Harbor, N.Y.). 2: 62-80. PMID 10467567 DOI: 10.1101/Lm.2.2.62  0.758
1995 Chew SJ, Mello C, Nottebohm F, Jarvis E, Vicario DS. Decrements in auditory responses to a repeated conspecific song are long-lasting and require two periods of protein synthesis in the songbird forebrain. Proceedings of the National Academy of Sciences of the United States of America. 92: 3406-10. PMID 7724575 DOI: 10.1073/Pnas.92.8.3406  0.778
1990 Rivas MV, Jarvis ED, Rudner R. The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus. Gene. 87: 71-8. PMID 2110100 DOI: 10.1016/0378-1119(90)90497-F  0.342
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