Erich David Jarvis - Publications

Affiliations: 
Duke University, Durham, NC 
Area:
Vocal learning
Website:
http://www.jarvislab.net/

128 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Wirthlin M, Lima NCB, Guedes RLM, Soares AER, Almeida LGP, Cavaleiro NP, Loss de Morais G, Chaves AV, Howard JT, Teixeira MM, Schneider PN, Santos FR, Schatz MC, Felipe MS, Miyaki CY, ... ... Jarvis ED, et al. Parrot Genomes and the Evolution of Heightened Longevity and Cognition. Current Biology : Cb. PMID 30528582 DOI: 10.1016/j.cub.2018.10.050  1
2018 Audet JN, Kayello L, Ducatez S, Perillo S, Cauchard L, Howard JT, O'Connell LA, Jarvis ED, Lefebvre L. Divergence in problem-solving skills is associated with differential expression of glutamate receptors in wild finches. Science Advances. 4: eaao6369. PMID 29546239 DOI: 10.1126/sciadv.aao6369  0.32
2017 Korlach J, Gedman G, Kingan SB, Chin CS, Howard JT, Audet JN, Cantin L, Jarvis ED. De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads. Gigascience. 6: 1-16. PMID 29020750 DOI: 10.1093/gigascience/gix085  0.32
2016 Machado JP, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Bone-associated gene evolution and the origin of flight in birds. Bmc Genomics. 17: 371. PMID 27193938 DOI: 10.1186/s12864-016-2681-7  1
2016 Jarvis ED. Perspectives from the Avian Phylogenomics Project: Questions that Can Be Answered with Sequencing All Genomes of a Vertebrate Class. Annual Review of Animal Biosciences. 4: 45-59. PMID 26884102 DOI: 10.1146/annurev-animal-021815-111216  1
2015 Chakraborty M, Jarvis ED. Brain evolution by brain pathway duplication. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26554045 DOI: 10.1098/rstb.2015.0056  1
2015 Jarvis ED. Surviving as an underrepresented minority scientist in a majority environment. Molecular Biology of the Cell. 26: 3692-6. PMID 26515973 DOI: 10.1091/mbc.E15-06-0451  1
2015 Haug-Baltzell A, Jarvis ED, McCarthy FM, Lyons E. Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates. Frontiers in Neuroscience. 9: 361. PMID 26500483 DOI: 10.3389/fnins.2015.00361  1
2015 Jarvis ED. Listening in. Elife. 4. PMID 26486860 DOI: 10.7554/eLife.11665  1
2015 Brusatte SL, O'Connor JK, Jarvis ED. The Origin and Diversification of Birds. Current Biology : Cb. 25: R888-98. PMID 26439352 DOI: 10.1016/j.cub.2015.08.003  1
2015 Borges R, Khan I, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds. Bmc Genomics. 16: 751. PMID 26438339 DOI: 10.1186/s12864-015-1924-3  1
2015 Arriaga G, Macopson JJ, Jarvis ED. Transsynaptic Tracing from Peripheral Targets with Pseudorabies Virus Followed by Cholera Toxin and Biotinylated Dextran Amines Double Labeling. Journal of Visualized Experiments : Jove. PMID 26436639 DOI: 10.3791/50672  1
2015 Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404820 DOI: 10.1126/science.aab1578  1
2015 Khan I, Yang Z, Maldonado E, Li C, Zhang G, Gilbert MT, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Olfactory receptor subgenomes linked with broad ecological adaptations in Sauropsida. Molecular Biology and Evolution. PMID 26219582 DOI: 10.1093/molbev/msv155  1
2015 Chabout J, Sarkar A, Dunson DB, Jarvis ED. Male mice song syntax depends on social contexts and influences female preferences. Frontiers in Behavioral Neuroscience. 9: 76. PMID 25883559 DOI: 10.3389/fnbeh.2015.00076  1
2015 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/s13742-014-0038-1  1
2015 Eöry L, Gilbert MT, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis E, Flicek P, Burt DW. Avianbase: a community resource for bird genomics. Genome Biology. 16: 21. PMID 25723810 DOI: 10.1186/s13059-015-0588-2  1
2015 Wang R, Chen CC, Hara E, Rivas MV, Roulhac PL, Howard JT, Chakraborty M, Audet JN, Jarvis ED. Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners. The Journal of Comparative Neurology. 523: 892-906. PMID 25424606 DOI: 10.1002/cne.23719  1
2015 Chakraborty M, Walløe S, Nedergaard S, Fridel EE, Dabelsteen T, Pakkenberg B, Bertelsen MF, Dorrestein GM, Brauth SE, Durand SE, Jarvis ED. Core and shell song systems unique to the parrot brain Plos One. 10. DOI: 10.1371/journal.pone.0118496  1
2015 Ribeiro ÂM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MTP, Da Fonseca RR. A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis Bmc Evolutionary Biology. 15. DOI: 10.1186/s12862-015-0409-y  1
2014 Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Jarvis ED, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27  1
2014 Zhang G, Li B, Li C, Gilbert MT, Jarvis ED, Wang J. Comparative genomic data of the Avian Phylogenomics Project. Gigascience. 3: 26. PMID 25671091 DOI: 10.1186/2047-217X-3-26  1
2014 Dai R, Rossello R, Chen CC, Kessler J, Davison I, Hochgeschwender U, Jarvis ED. Maintenance and neuronal differentiation of chicken induced pluripotent stem-like cells. Stem Cells International. 2014: 182737. PMID 25610469 DOI: 10.1155/2014/182737  1
2014 Pereira J, Johnson WE, O'Brien SJ, Jarvis ED, Zhang G, Gilbert MT, Vasconcelos V, Antunes A. Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates. Plos One. 9: e74132. PMID 25549322 DOI: 10.1371/journal.pone.0074132  1
2014 Petkov CI, Jarvis ED. The basal ganglia within a cognitive system in birds and mammals. The Behavioral and Brain Sciences. 37: 568-9; discussion 57. PMID 25514958 DOI: 10.1017/S0140525X13004160  1
2014 Pfenning AR, Hara E, Whitney O, Rivas MV, Wang R, Roulhac PL, Howard JT, Wirthlin M, Lovell PV, Ganapathy G, Mouncastle J, Moseley MA, Thompson JW, Soderblom EJ, Iriki A, ... ... Jarvis ED, et al. Convergent transcriptional specializations in the brains of humans and song-learning birds. Science (New York, N.Y.). 346: 1256846. PMID 25504733 DOI: 10.1126/science.1256846  1
2014 Whitney O, Pfenning AR, Howard JT, Blatti CA, Liu F, Ward JM, Wang R, Audet JN, Kellis M, Mukherjee S, Sinha S, Hartemink AJ, West AE, Jarvis ED. Core and region-enriched networks of behaviorally regulated genes and the singing genome. Science (New York, N.Y.). 346: 1256780. PMID 25504732 DOI: 10.1126/science.1256780  1
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, ... ... Jarvis ED, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/science.1254449  1
2014 Meredith RW, Zhang G, Gilbert MT, Jarvis ED, Springer MS. Evidence for a single loss of mineralized teeth in the common avian ancestor. Science (New York, N.Y.). 346: 1254390. PMID 25504730 DOI: 10.1126/science.1254390  1
2014 Zhou Q, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MT, Zhang G. Complex evolutionary trajectories of sex chromosomes across bird taxa. Science (New York, N.Y.). 346: 1246338. PMID 25504727 DOI: 10.1126/science.1246338  1
2014 Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/science.1253451  1
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... ... Jarvis ED, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/science.1251385  0.6
2014 Zhang G, Jarvis ED, Gilbert MT. Avian genomes. A flock of genomes. Introduction. Science (New York, N.Y.). 346: 1308-9. PMID 25504710 DOI: 10.1126/science.346.6215.1308  1
2014 Li S, Li B, Cheng C, Xiong Z, Liu Q, Lai J, Carey HV, Zhang Q, Zheng H, Wei S, Zhang H, Chang L, Liu S, Zhang S, Yu B, ... ... Jarvis ED, et al. Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species. Genome Biology. 15: 557. PMID 25496777 DOI: 10.1186/s13059-014-0557-1  0.56
2014 Romanov MN, Farré M, Lithgow PE, Fowler KE, Skinner BM, O'Connor R, Fonseka G, Backström N, Matsuda Y, Nishida C, Houde P, Jarvis ED, Ellegren H, Burt DW, Larkin DM, et al. Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. Bmc Genomics. 15: 1060. PMID 25496766 DOI: 10.1186/1471-2164-15-1060  1
2014 Greenwold MJ, Bao W, Jarvis ED, Hu H, Li C, Gilbert MT, Zhang G, Sawyer RH. Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles. Bmc Evolutionary Biology. 14: 249. PMID 25496280 DOI: 10.1186/s12862-014-0249-1  1
2014 Callicrate T, Dikow R, Thomas JW, Mullikin JC, Jarvis ED, Fleischer RC. Genomic resources for the endangered Hawaiian honeycreepers. Bmc Genomics. 15: 1098. PMID 25496081 DOI: 10.1186/1471-2164-15-1098  1
2014 Wirthlin M, Lovell PV, Jarvis ED, Mello CV. Comparative genomics reveals molecular features unique to the songbird lineage. Bmc Genomics. 15: 1082. PMID 25494627 DOI: 10.1186/1471-2164-15-1082  1
2014 Kubikova L, Bosikova E, Cvikova M, Lukacova K, Scharff C, Jarvis ED. Basal ganglia function, stuttering, sequencing, and repair in adult songbirds. Scientific Reports. 4: 6590. PMID 25307086 DOI: 10.1038/srep06590  1
2014 Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, ... ... Jarvis ED, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11  1
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. Brain, Behavior and Evolution. 83: 1-8. PMID 24603302 DOI: 10.1159/000360152  1
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. The Journal of Comparative Neurology. 522: 1445-53. PMID 24596113 DOI: 10.1002/cne.23568  1
2013 Rosselló RA, Chen CC, Dai R, Howard JT, Hochgeschwender U, Jarvis ED. Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species. Elife. 2: e00036. PMID 24015354 DOI: 10.7554/eLife.00036  1
2013 Smulders TV, Jarvis ED. Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location. Neurobiology of Learning and Memory. 106: 163-76. PMID 23999220 DOI: 10.1016/j.nlm.2013.08.010  1
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Jarvis ED, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.32
2013 Liu WC, Wada K, Jarvis ED, Nottebohm F. Rudimentary substrates for vocal learning in a suboscine. Nature Communications. 4: 2082. PMID 23823977 DOI: 10.1038/ncomms3082  1
2013 Chen CC, Winkler CM, Pfenning AR, Jarvis ED. Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities. The Journal of Comparative Neurology. 521: 3666-701. PMID 23818174 DOI: 10.1002/cne.23406  1
2013 Jarvis ED, Yu J, Rivas MV, Horita H, Feenders G, Whitney O, Jarvis SC, Jarvis ER, Kubikova L, Puck AE, Siang-Bakshi C, Martin S, McElroy M, Hara E, Howard J, et al. Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns. The Journal of Comparative Neurology. 521: 3614-65. PMID 23818122 DOI: 10.1002/cne.23404  1
2013 Parchman TL, Gompert Z, Braun MJ, Brumfield RT, McDonald DB, Uy JA, Zhang G, Jarvis ED, Schlinger BA, Buerkle CA. The genomic consequences of adaptive divergence and reproductive isolation between species of manakins. Molecular Ecology. 22: 3304-17. PMID 23441849 DOI: 10.1111/mec.12201  1
2013 Arriaga G, Jarvis ED. Mouse vocal communication system: are ultrasounds learned or innate? Brain and Language. 124: 96-116. PMID 23295209 DOI: 10.1016/j.bandl.2012.10.002  1
2013 Wada K, Chen CC, Jarvis ED. Detecting neural activity-dependent immediate early gene expression in the brain Methods in Neuroethological Research. 133-149. DOI: 10.1007/978-4-431-54331-2_9  0.52
2012 Arriaga G, Zhou EP, Jarvis ED. Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds. Plos One. 7: e46610. PMID 23071596 DOI: 10.1371/journal.pone.0046610  1
2012 Petkov CI, Jarvis ED. Birds, primates, and spoken language origins: behavioral phenotypes and neurobiological substrates. Frontiers in Evolutionary Neuroscience. 4: 12. PMID 22912615 DOI: 10.3389/fnevo.2012.00012  1
2012 Horita H, Kobayashi M, Liu WC, Oka K, Jarvis ED, Wada K. Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds. Plos One. 7: e42173. PMID 22876306 DOI: 10.1371/journal.pone.0042173  1
2012 Chen CC, Balaban E, Jarvis ED. Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes. Plos One. 7: e42477. PMID 22860132 DOI: 10.1371/journal.pone.0042477  1
2012 Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology. 30: 693-700. PMID 22750884 DOI: 10.1038/nbt.2280  1
2012 Chen CC, Wada K, Jarvis ED. Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue. Journal of Visualized Experiments : Jove. PMID 22566072 DOI: 10.3791/3764  1
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... Jarvis ED, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/gb-2012-13-1-415  1
2012 Simonyan K, Horwitz B, Jarvis ED. Dopamine regulation of human speech and bird song: a critical review. Brain and Language. 122: 142-50. PMID 22284300 DOI: 10.1016/j.bandl.2011.12.009  1
2012 Hara E, Rivas MV, Ward JM, Okanoya K, Jarvis ED. Convergent differential regulation of parvalbumin in the brains of vocal learners. Plos One. 7: e29457. PMID 22238614 DOI: 10.1371/journal.pone.0029457  1
2011 Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H. Dynamic evolution of base composition: causes and consequences in avian phylogenomics. Molecular Biology and Evolution. 28: 2197-210. PMID 21393604 DOI: 10.1093/molbev/msr047  1
2011 Roulhac PL, Ward JM, Thompson JW, Soderblom EJ, Silva M, Moseley MA, Jarvis ED. Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells. Cold Spring Harbor Protocols. 2011: pdb.prot5573. PMID 21285273 DOI: 10.1101/pdb.prot5573  1
2011 KÜnstner A, Wolf JBW, BackstrÖm N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)) Molecular Ecology. 20: 2871. DOI: 10.1111/j.1365-294X.2011.05169.x  1
2010 Zapka M, Heyers D, Liedvogel M, Jarvis ED, Mouritsen H. Night-time neuronal activation of Cluster N in a day- and night-migrating songbird. The European Journal of Neuroscience. 32: 619-24. PMID 20618826 DOI: 10.1111/j.1460-9568.2010.07311.x  1
2010 Nabholz B, Jarvis ED, Ellegren H. Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny. Molecular Phylogenetics and Evolution. 57: 466-70. PMID 20601014 DOI: 10.1016/j.ympev.2010.06.009  1
2010 Horita H, Wada K, Rivas MV, Hara E, Jarvis ED. The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons. The Journal of Comparative Neurology. 518: 2873-901. PMID 20506480 DOI: 10.1002/cne.22370  1
2010 Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, et al. The genome of a songbird. Nature. 464: 757-62. PMID 20360741 DOI: 10.1038/nature08819  1
2010 Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Molecular Ecology. 19: 266-76. PMID 20331785 DOI: 10.1111/j.1365-294X.2009.04487.x  1
2010 Kubikova L, Wada K, Jarvis ED. Dopamine receptors in a songbird brain. The Journal of Comparative Neurology. 518: 741-69. PMID 20058221 DOI: 10.1002/cne.22255  1
2010 Robinson GE, Banks JA, Padilla DK, Burggren WW, Cohen CS, Delwiche CF, Funk V, Hoekstra HE, Jarvis ED, Johnson L, Martindale MQ, Rio CMD, Medina M, Salt DE, Sinha S, et al. Empowering 21st century biology Bioscience. 60: 923-930. DOI: 10.1525/bio.2010.60.11.8  1
2010 Jarvis ED. Bird song systems: Evolution Encyclopedia of Neuroscience. 217-225. DOI: 10.1016/B978-008045046-9.00935-9  1
2010 Jarvis ED. Bird Brain: Evolution Encyclopedia of Neuroscience. 209-215. DOI: 10.1016/B978-008045046-9.00934-7  1
2010 Jarvis ED. The evolution of vocal learning systems in birds and humans Evolution of Nervous Systems. 2: 213-227. DOI: 10.1016/B0-12-370878-8/00136-1  1
2009 Hara E, Kubikova L, Hessler NA, Jarvis ED. Assessing visual requirements for social context-dependent activation of the songbird song system. Proceedings. Biological Sciences / the Royal Society. 276: 279-89. PMID 18826930 DOI: 10.1098/rspb.2008.1138  1
2008 Horita H, Wada K, Jarvis ED. Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway. The European Journal of Neuroscience. 28: 2519-32. PMID 19087177 DOI: 10.1111/j.1460-9568.2008.06535.x  1
2008 Pinaud R, Osorio C, Alzate O, Jarvis ED. Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics. The European Journal of Neuroscience. 27: 1409-22. PMID 18364021 DOI: 10.1111/j.1460-9568.2008.06102.x  1
2008 Feenders G, Liedvogel M, Rivas M, Zapka M, Horita H, Hara E, Wada K, Mouritsen H, Jarvis ED. Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin. Plos One. 3: e1768. PMID 18335043 DOI: 10.1371/journal.pone.0001768  1
2007 Jarvis ED. Neural systems for vocal learning in birds and humans: a synopsis. Journal of Ornithology / Do-G. 148: 35-44. PMID 19684872 DOI: 10.1007/s10336-007-0243-0  1
2007 Hara E, Kubikova L, Hessler NA, Jarvis ED. Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context. The European Journal of Neuroscience. 25: 3406-16. PMID 17553009 DOI: 10.1111/j.1460-9568.2007.05600.x  1
2007 Kubikova L, Turner EA, Jarvis ED. The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway. The European Journal of Neuroscience. 25: 2145-60. PMID 17419760 DOI: 10.1111/j.1460-9568.2007.05368.x  1
2007 Liedvogel M, Feenders G, Wada K, Troje NF, Jarvis ED, Mouritsen H. Lateralized activation of Cluster N in the brains of migratory songbirds. The European Journal of Neuroscience. 25: 1166-73. PMID 17331212 DOI: 10.1111/j.1460-9568.2007.05350.x  1
2006 Ferreira AR, Smulders TV, Sameshima K, Mello CV, Jarvis ED. VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS). The Auk. 123: 1129-1148. PMID 18802498  1
2006 Smith VA, Yu J, Smulders TV, Hartemink AJ, Jarvis ED. Computational inference of neural information flow networks. Plos Computational Biology. 2: e161. PMID 17121460 DOI: 10.1371/journal.pcbi.0020161  1
2006 Wada K, Howard JT, McConnell P, Whitney O, Lints T, Rivas MV, Horita H, Patterson MA, White SA, Scharff C, Haesler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, ... ... Jarvis ED, et al. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Proceedings of the National Academy of Sciences of the United States of America. 103: 15212-7. PMID 17018643 DOI: 10.1073/pnas.0607098103  1
2006 Sasaki A, Sotnikova TD, Gainetdinov RR, Jarvis ED. Social context-dependent singing-regulated dopamine. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 9010-4. PMID 16943558 DOI: 10.1523/JNEUROSCI.1335-06.2006  1
2006 Ferreira ARJ, Smulders TV, Sameshima K, Mello CV, Jarvis ED. Vocalizations and associated behaviors of the sombre hummingbird (Aphantochroa cirrhochloris) and the rufous-breasted hermit (Glaucis hirsutus) Auk. 123: 1129-1148. DOI: 10.1642/0004-8038(2006)123[1129:VAABOT]2.0.CO;2  1
2005 Burmeister SS, Jarvis ED, Fernald RD. Rapid behavioral and genomic responses to social opportunity. Plos Biology. 3: e363. PMID 16216088 DOI: 10.1371/journal.pbio.0030363  1
2005 Mouritsen H, Feenders G, Liedvogel M, Wada K, Jarvis ED. Night-vision brain area in migratory songbirds. Proceedings of the National Academy of Sciences of the United States of America. 102: 8339-44. PMID 15928090 DOI: 10.1073/pnas.0409575102  1
2005 Jarvis ED, Güntürkün O, Bruce L, Csillag A, Karten H, Kuenzel W, Medina L, Paxinos G, Perkel DJ, Shimizu T, Striedter G, Wild JM, Ball GF, Dugas-Ford J, Durand SE, et al. Avian brains and a new understanding of vertebrate brain evolution. Nature Reviews. Neuroscience. 6: 151-9. PMID 15685220 DOI: 10.1038/nrn1606  1
2004 Reiner A, Perkel DJ, Bruce LL, Butler AB, Csillag A, Kuenzel W, Medina L, Paxinos G, Shimizu T, Striedter G, Wild M, Ball GF, Durand S, Gütürkün O, Lee DW, ... ... Jarvis ED, et al. The Avian Brain Nomenclature Forum: Terminology for a New Century in Comparative Neuroanatomy. The Journal of Comparative Neurology. 473: E1-E6. PMID 19626136 DOI: 10.1002/cne.20119  1
2004 Jarvis ED. Learned birdsong and the neurobiology of human language. Annals of the New York Academy of Sciences. 1016: 749-77. PMID 15313804 DOI: 10.1196/annals.1298.038  1
2004 Reiner A, Perkel DJ, Mello CV, Jarvis ED. Songbirds and the revised avian brain nomenclature. Annals of the New York Academy of Sciences. 1016: 77-108. PMID 15313771 DOI: 10.1196/annals.1298.013  1
2004 Yu J, Smith VA, Wang PP, Hartemink AJ, Jarvis ED. Advances to Bayesian network inference for generating causal networks from observational biological data. Bioinformatics (Oxford, England). 20: 3594-603. PMID 15284094 DOI: 10.1093/bioinformatics/bth448  1
2004 Wada K, Sakaguchi H, Jarvis ED, Hagiwara M. Differential expression of glutamate receptors in avian neural pathways for learned vocalization. The Journal of Comparative Neurology. 476: 44-64. PMID 15236466 DOI: 10.1002/cne.20201  1
2004 Reiner A, Perkel DJ, Bruce LL, Butler AB, Csillag A, Kuenzel W, Medina L, Paxinos G, Shimizu T, Striedter G, Wild M, Ball GF, Durand S, Güntürkün O, Lee DW, ... ... Jarvis ED, et al. Revised nomenclature for avian telencephalon and some related brainstem nuclei. The Journal of Comparative Neurology. 473: 377-414. PMID 15116397 DOI: 10.1002/cne.20118  1
2004 Haesler S, Wada K, Nshdejan A, Morrisey EE, Lints T, Jarvis ED, Scharff C. FoxP2 expression in avian vocal learners and non-learners. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 3164-75. PMID 15056696 DOI: 10.1523/JNEUROSCI.4369-03.2004  1
2004 Jarvis ED. Brains and birdsong Nature's Music: the Science of Birdsong. 226-271. DOI: 10.1016/B978-012473070-0/50011-6  1
2003 Gustincich S, Batalov S, Beisel KW, Bono H, Carninci P, Fletcher CF, Grimmond S, Hirokawa N, Jarvis ED, Jegla T, Kawasawa Y, LeMieux J, Miki H, Raviola E, Teasdale RD, et al. Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Research. 13: 1395-401. PMID 12819138 DOI: 10.1101/gr.1135303  1
2003 Smith VA, Jarvis ED, Hartemink AJ. Influence of network topology and data collection on network inference. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 164-75. PMID 12603026  1
2002 Ribeiro S, Mello CV, Velho T, Gardner TJ, Jarvis ED, Pavlides C. Induction of hippocampal long-term potentiation during waking leads to increased extrahippocampal zif-268 expression during ensuing rapid-eye-movement sleep. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 10914-23. PMID 12486186  1
2002 Jarvis ED, Smith VA, Wada K, Rivas MV, McElroy M, Smulders TV, Carninci P, Hayashizaki Y, Dietrich F, Wu X, McConnell P, Yu J, Wang PP, Hartemink AJ, Lin S. A framework for integrating the songbird brain. Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. 188: 961-80. PMID 12471494 DOI: 10.1007/s00359-002-0358-y  1
2002 Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Jarvis ED, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/nature01266  1
2002 Smith VA, Jarvis ED, Hartemink AJ. Evaluating functional network inference using simulations of complex biological systems. Bioinformatics (Oxford, England). 18: S216-24. PMID 12169550  1
2001 Jarvis E. The importance of anatomical substrates Proceedings of the Atlantic Symposium On Computational Biology and Genome Information Systems and Technolgoy, Cbgist 2001. 5.  1
2000 Krebs CJ, Jarvis ED, Chan J, Lydon JP, Ogawa S, Pfaff DW. A membrane-associated progesterone-binding protein, 25-Dx, is regulated by progesterone in brain regions involved in female reproductive behaviors. Proceedings of the National Academy of Sciences of the United States of America. 97: 12816-21. PMID 11070092 DOI: 10.1073/pnas.97.23.12816  1
2000 Denisenko-Nehrbass NI, Jarvis E, Scharff C, Nottebohm F, Mello CV. Site-specific retinoic acid production in the brain of adult songbirds. Neuron. 27: 359-70. PMID 10985355  1
2000 Jarvis ED, Ribeiro S, da Silva ML, Ventura D, Vielliard J, Mello CV. Behaviourally driven gene expression reveals song nuclei in hummingbird brain. Nature. 406: 628-32. PMID 10949303 DOI: 10.1038/35020570  1
2000 Li XC, Jarvis ED, Alvarez-Borda B, Lim DA, Nottebohm F. A relationship between behavior, neurotrophin expression, and new neuron survival. Proceedings of the National Academy of Sciences of the United States of America. 97: 8584-9. PMID 10890902 DOI: 10.1073/pnas.140222497  1
2000 Jarvis ED, Mello CV. Molecular mapping of brain areas involved in parrot vocal communication. The Journal of Comparative Neurology. 419: 1-31. PMID 10717637 DOI: 10.1002/(SICI)1096-9861(20000327)419:1<1::AID-CNE1>3.0.CO;2-M  1
1999 Krebs CJ, Jarvis ED, Pfaff DW. The 70-kDa heat shock cognate protein (Hsc73) gene is enhanced by ovarian hormones in the ventromedial hypothalamus. Proceedings of the National Academy of Sciences of the United States of America. 96: 1686-91. PMID 9990085 DOI: 10.1073/pnas.96.4.1686  1
1999 Rudner R, Jarvis ED. Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' mol microbiol (1998) 27: 687-703 Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper 'Classification and genetic characterization of pattern-forming bacilli' Mol Microbiol (1998) 27: 687-703 [4] Molecular Microbiology. 31: 1279-1281. DOI: 10.1046/j.1365-2958.1999.01259.x  1
1999 Mello IV, Jarvis ED. Chapter 2.2.2 Applying differential display to brain research Techniques in the Behavioral and Neural Sciences. 13: 200-211. DOI: 10.1016/S0921-0709(99)80019-4  1
1998 Jarvis ED, Scharff C, Grossman MR, Ramos JA, Nottebohm F. For whom the bird sings: context-dependent gene expression. Neuron. 21: 775-88. PMID 9808464 DOI: 10.1016/S0896-6273(00)80594-2  1
1998 Rudner R, Martsinkevich O, Leung W, Jarvis ED. Classification and genetic characterization of pattern-forming Bacilli. Molecular Microbiology. 27: 687-703. PMID 9515696 DOI: 10.1046/j.1365-2958.1998.00717.x  1
1997 Holzenberger M, Jarvis ED, Chong C, Grossman M, Nottebohm F, Scharff C. Selective expression of insulin-like growth factor II in the songbird brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 17: 6974-87. PMID 9278533  1
1997 Mello CV, Jarvis ED, Denisenko N, Rivas M. Isolation of song-regulated genes in the brain of songbirds. Methods in Molecular Biology (Clifton, N.J.). 85: 205-17. PMID 9276326 DOI: 10.1385/0-89603-489-5:205  1
1997 Jarvis ED, Schwabl H, Ribeiro S, Mello CV. Brain gene regulation by territorial singing behavior in freely ranging songbirds. Neuroreport. 8: 2073-7. PMID 9223104  1
1997 Jarvis ED, Nottebohm F. Motor-driven gene expression. Proceedings of the National Academy of Sciences of the United States of America. 94: 4097-102. PMID 9108111 DOI: 10.1073/pnas.94.8.4097  1
1997 Rivas MV, Jarvis ED, Morisaki S, Carbonaro H, Gottlieb AB, Krueger JG. Identification of aberrantly regulated genes in diseased skin using the cDNA differential display technique. The Journal of Investigative Dermatology. 108: 188-94. PMID 9008232  1
1995 Jarvis ED, Mello CV, Nottebohm F. Associative learning and stimulus novelty influence the song-induced expression of an immediate early gene in the canary forebrain. Learning & Memory (Cold Spring Harbor, N.Y.). 2: 62-80. PMID 10467567  1
1994 Rudner R, Studamire B, Jarvis ED. Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes. Methods in Enzymology. 235: 184-96. PMID 7520118 DOI: 10.1016/0076-6879(94)35140-6  1
1993 Rudner R, Chevrestt A, Buchholz SR, Studamire B, White AM, Jarvis ED. Two tRNA gene clusters associated with rRNA operons rrnD and rrnE in Bacillus subtilis. Journal of Bacteriology. 175: 503-9. PMID 8419296  1
1990 Rivas MV, Jarvis ED, Rudner R. The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus. Gene. 94: 141-3. PMID 2227447  0.6
1990 Rivas MV, Jarvis ED, Rudner R. The structure of the trpE, trpD and 5' trpC genes of Bacillus pumilus. Gene. 87: 71-8. PMID 2110100  1
1990 Jarvis ED, Cheng S, Rudner R. Genetic structure and DNA sequences at junctions involved in the rearrangements of Bacillus subtilis strains carrying the trpE26 mutation. Genetics. 126: 785-97. PMID 1981762  1
1988 Widom RL, Jarvis ED, LaFauci G, Rudner R. Instability of rRNA operons in Bacillus subtilis. Journal of Bacteriology. 170: 605-10. PMID 2828315  1
1988 Jarvis ED, Widom RL, LaFauci G, Setoguchi Y, Richter IR, Rudner R. Chromosomal organization of rRNA operons in Bacillus subtilis. Genetics. 120: 625-35. PMID 2465199  1
1986 LaFauci G, Widom RL, Eisner RL, Jarvis ED, Rudner R. Mapping of rRNA genes with integrable plasmids in Bacillus subtilis. Journal of Bacteriology. 165: 204-14. PMID 3079748  1
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