| Year |
Citation |
Score |
| 2023 |
Lee KK, Norris ET, Rishishwar L, Conley AB, Mariño-Ramírez L, McDonald JF, Jordan IK. Ethnic disparities in mortality and group-specific risk factors in the UK Biobank. Plos Global Public Health. 3: e0001560. PMID 36963080 DOI: 10.1371/journal.pgph.0001560 |
0.36 |
|
| 2022 |
Jordan IK, Lee KK, McDonald JF, Mariño-Ramírez L. Epigenetics and cancer disparities: when nature might be nurture. Oncoscience. 9: 23-24. PMID 35479648 DOI: 10.18632/oncoscience.555 |
0.411 |
|
| 2022 |
Lee KK, Rishishwar L, Ban D, Nagar SD, Mariño-Ramírez L, McDonald JF, Jordan IK. Association of genetic ancestry and molecular signatures with cancer survival disparities: a pan-cancer analysis. Cancer Research. PMID 35064017 DOI: 10.1158/0008-5472.CAN-21-2105 |
0.449 |
|
| 2020 |
Zhang M, Wang Y, Matyunina LV, Akbar A, McDonald JF. The ability of miRNAs to induce mesenchymal-to-epithelial transition (MET) in cancer cells is highly dependent upon genetic background. Cancer Letters. PMID 32234315 DOI: 10.1016/j.canlet.2020.03.023 |
0.309 |
|
| 2020 |
Clayton EA, Rishishwar L, Huang TC, Gulati S, Ban D, McDonald JF, Jordan IK. An atlas of transposable element-derived alternative splicing in cancer. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190342. PMID 32075558 DOI: 10.1098/Rstb.2019.0342 |
0.557 |
|
| 2020 |
Clayton EA, Khalid S, Ban D, Wang L, Jordan IK, McDonald JF. Tumor suppressor genes and allele-specific expression: mechanisms and significance. Oncotarget. 11: 462-479. PMID 32064050 DOI: 10.18632/Oncotarget.27468 |
0.518 |
|
| 2019 |
Dias ECL, Paim LR, Matos-Souza JR, Calegari DR, Gorla JI, Cliquet A, Lima CSP, McDonald JF, Nadruz W, Schreiber R. Bioinformatic analysis of circulating miRNAs related to cancer following spinal cord injury. Bioscience Reports. PMID 31444279 DOI: 10.1042/BSR20190989 |
0.309 |
|
| 2019 |
Zhang M, Jabbari N, Satpathy M, Matyunina LV, Wang Y, DeEtte McDonald L, McDonald JF. Sequence diverse miRNAs converge to induce mesenchymal-to-epithelial transition in ovarian cancer cells through direct and indirect regulatory controls. Cancer Letters. PMID 31163194 DOI: 10.1016/j.canlet.2019.05.039 |
0.31 |
|
| 2019 |
Elliott B, Millena AC, Matyunina L, Zhang M, Zou J, Wang G, Zhang Q, Bowen N, Eaton V, Webb G, Thompson S, McDonald J, Khan S. Essential role of JunD in cell proliferation is mediated via MYC signaling in prostate cancer cells. Cancer Letters. PMID 30763715 DOI: 10.1016/J.Canlet.2019.02.005 |
0.697 |
|
| 2019 |
Thompson B, Millena AC, Matyunina L, Zhang M, Zou J, Wang G, Zhang Q, Bowen N, Eaton V, Webb G, Thompson S, McDonald J, Khan S. Abstract 4306: JunD-induced cell proliferation requires MYC signaling in prostate cancer cells Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-4306 |
0.657 |
|
| 2018 |
Lili LN, Huang AD, Zhang M, Wang L, DeEtte McDonald L, Matyunina LV, Satpathy M, McDonald JF. Time-course analysis of microRNA-induced mesenchymal-to-epithelial transition underscores the complexity of the underlying molecular processes. Cancer Letters. PMID 29733963 DOI: 10.1016/J.Canlet.2018.05.001 |
0.673 |
|
| 2017 |
Huang C, Mezencev R, McDonald JF, Vannberg F. Open source machine-learning algorithms for the prediction of optimal cancer drug therapies. Plos One. 12: e0186906. PMID 29073279 DOI: 10.1371/Journal.Pone.0186906 |
0.333 |
|
| 2017 |
Mittal VK, McDonald JF. De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance. Bmc Medical Genomics. 10: 53. PMID 28851357 DOI: 10.1186/s12920-017-0289-7 |
0.332 |
|
| 2017 |
Zhang M, Matyunina LV, Walker LD, Chen W, Xiao H, Benigno BB, Wu R, McDonald JF. Evidence for the importance of post-transcriptional regulatory changes in ovarian cancer progression and the contribution of miRNAs. Scientific Reports. 7: 8171. PMID 28811560 DOI: 10.1038/S41598-017-08502-Z |
0.31 |
|
| 2017 |
Rishishwar L, Wang L, Clayton EA, Mariño-Ramírez L, McDonald JF, Jordan IK. Population and clinical genetics of human transposable elements in the (post) genomic era. Mobile Genetic Elements. 7: 1-20. PMID 28228978 DOI: 10.1080/2159256X.2017.1280116 |
0.505 |
|
| 2017 |
Zhang M, Matyunina L, Walker L, Chen W, Xiao H, Benigno B, Wu R, McDonald J. Evidence for the Importance of Post-transcriptional Regulatorychanges in ovarian cancer metastasis and the contribution of miRNAs Gynecologic Oncology. 147: 211-212. DOI: 10.1016/J.Ygyno.2017.07.061 |
0.307 |
|
| 2016 |
Clayton EA, Wang L, Rishishwar L, Wang J, McDonald JF, Jordan IK. Patterns of Transposable Element Expression and Insertion in Cancer. Frontiers in Molecular Biosciences. 3: 76. PMID 27900322 DOI: 10.3389/Fmolb.2016.00076 |
0.55 |
|
| 2016 |
Schreiber R, Mezencev R, Matyunina LV, McDonald JF. Evidence for the role of microRNA 374b in acquired cisplatin resistance in pancreatic cancer cells. Cancer Gene Therapy. PMID 27229158 DOI: 10.1038/cgt.2016.23 |
0.309 |
|
| 2016 |
Mezencev R, Matyunina LV, Jabbari N, McDonald JF. Snail-induced epithelial-to-mesenchymal transition of MCF-7 breast cancer cells: systems analysis of molecular changes and their effect on radiation and drug sensitivity. Bmc Cancer. 16: 236. PMID 26988558 DOI: 10.1186/s12885-016-2274-5 |
0.332 |
|
| 2016 |
Mezencev R, McDonald JF. Abstract 1292: Camalexin, an indole phytoalexin from Arabidopsis thaliana, displays activity against ovarian cancer stem cells Cancer Research. 76: 1292-1292. DOI: 10.1158/1538-7445.Am2016-1292 |
0.336 |
|
| 2015 |
Mittal VK, McDonald JF. Integrated sequence and expression analysis of ovarian cancer structural variants underscores the importance of gene fusion regulation. Bmc Medical Genomics. 8: 40. PMID 26177635 DOI: 10.1186/s12920-015-0118-9 |
0.367 |
|
| 2015 |
Vermeersch KA, Wang L, Mezencev R, McDonald JF, Styczynski MP. OVCAR-3 spheroid-derived cells display distinct metabolic profiles. Plos One. 10: e0118262. PMID 25688563 DOI: 10.1371/journal.pone.0118262 |
0.333 |
|
| 2015 |
McGrail DJ, Mezencev R, Kieu QM, McDonald JF, Dawson MR. SNAIL-induced epithelial-to-mesenchymal transition produces concerted biophysical changes from altered cytoskeletal gene expression. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 29: 1280-9. PMID 25491311 DOI: 10.1096/fj.14-257345 |
0.329 |
|
| 2015 |
Allam H, Aoki K, Benigno BB, McDonald JF, Mackintosh SG, Tiemeyer M, Abbott KL. Glycomic analysis of membrane glycoproteins with bisecting glycosylation from ovarian cancer tissues reveals novel structures and functions. Journal of Proteome Research. 14: 434-46. PMID 25437919 DOI: 10.1021/Pr501174P |
0.317 |
|
| 2014 |
Vermeersch KA, Wang L, McDonald JF, Styczynski MP. Distinct metabolic responses of an ovarian cancer stem cell line. Bmc Systems Biology. 8: 134. PMID 25518943 DOI: 10.1186/s12918-014-0134-y |
0.309 |
|
| 2014 |
Hill CG, Jabbari N, Matyunina LV, McDonald JF. Functional and evolutionary significance of human microRNA seed region mutations. Plos One. 9: e115241. PMID 25501359 DOI: 10.1371/journal.pone.0115241 |
0.314 |
|
| 2014 |
Hill CG, Matyunina LV, Walker D, Benigno BB, McDonald JF. Transcriptional override: a regulatory network model of indirect responses to modulations in microRNA expression. Bmc Systems Biology. 8: 36. PMID 24666724 DOI: 10.1186/1752-0509-8-36 |
0.321 |
|
| 2014 |
Lili LN, Matyunina LV, Walker LD, Daneker GW, McDonald JF. Evidence for the importance of personalized molecular profiling in pancreatic cancer. Pancreas. 43: 198-211. PMID 24518497 DOI: 10.1097/MPA.0000000000000020 |
0.345 |
|
| 2014 |
Jabbari N, Reavis AN, McDonald JF. Sequence variation among members of the miR-200 microRNA family is correlated with variation in the ability to induce hallmarks of mesenchymal-epithelial transition in ovarian cancer cells. Journal of Ovarian Research. 7: 12. PMID 24447705 DOI: 10.1186/1757-2215-7-12 |
0.33 |
|
| 2013 |
Lili LN, Matyunina LV, Walker LD, Wells SL, Benigno BB, McDonald JF. Molecular profiling supports the role of epithelial-to-mesenchymal transition (EMT) in ovarian cancer metastasis. Journal of Ovarian Research. 6: 49. PMID 23837907 DOI: 10.1186/1757-2215-6-49 |
0.34 |
|
| 2013 |
Lili LN, Matyunina LV, Walker LD, Benigno BB, McDonald JF. Molecular profiling predicts the existence of two functionally distinct classes of ovarian cancer stroma. Biomed Research International. 2013: 846387. PMID 23762861 DOI: 10.1155/2013/846387 |
0.345 |
|
| 2013 |
Mezencev R, Wang L, Xu W, Kim B, Sulchek TA, Daneker GW, McDonald JF. Molecular analysis of the inhibitory effect of N-acetyl-L-cysteine on the proliferation and invasiveness of pancreatic cancer cells. Anti-Cancer Drugs. 24: 504-18. PMID 23511429 DOI: 10.1097/Cad.0B013E32836009D7 |
0.328 |
|
| 2012 |
Xu W, Mezencev R, Kim B, Wang L, McDonald J, Sulchek T. Cell Stiffness Is a Biomarker of the Metastatic Potential of Ovarian Cancer Cells Plos One. 7. PMID 23056368 DOI: 10.1371/Journal.Pone.0046609 |
0.325 |
|
| 2012 |
Arora G, Mezencev R, McDonald JF. Human cells display reduced apoptotic function relative to chimpanzee cells. Plos One. 7: e46182. PMID 23029431 DOI: 10.1371/journal.pone.0046182 |
0.32 |
|
| 2012 |
Shahab SW, Matyunina LV, Hill CG, Wang L, Mezencev R, Walker LD, McDonald JF. The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated. Bmc Medical Genomics. 5: 33. PMID 22853714 DOI: 10.1186/1755-8794-5-33 |
0.762 |
|
| 2012 |
Liu Y, Bowen NJ, Matyunina L, McDonald J, Prausnitz MR. Gene transfection enhanced by ultrasound exposure combined with drug treatment guided by gene chip analysis International Journal of Hyperthermia. 28: 349-361. PMID 22621736 DOI: 10.3109/02656736.2012.669513 |
0.68 |
|
| 2012 |
Medrzycki M, Zhang Y, McDonald JF, Fan Y. Profiling of linker histone variants in ovarian cancer. Frontiers in Bioscience (Landmark Edition). 17: 396-406. PMID 22201751 DOI: 10.2741/3934 |
0.314 |
|
| 2012 |
Wang L, Mezencev R, Bowen NJ, Matyunina LV, McDonald JF. Isolation and characterization of stem-like cells from a human ovarian cancer cell line. Molecular and Cellular Biochemistry. 363: 257-68. PMID 22160925 DOI: 10.1007/S11010-011-1178-6 |
0.702 |
|
| 2012 |
Mezencev R, Jabbari N, McDonald JF. Abstract LB-246: Epithelial-mesenchymal transition (EMT) does not necessarily decrease the sensitivity of cancer cells to chemotherapeutic agents Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Lb-246 |
0.333 |
|
| 2012 |
McDonald JF, Shahab S, Mezencev R, Matyunina L, Wang L. Abstract 138: The effects of microRNA transfections on global patterns of gene expression are functionally coordinated Cancer Research. 72: 138-138. DOI: 10.1158/1538-7445.Am2012-138 |
0.765 |
|
| 2011 |
Polavarapu N, Arora G, Mittal VK, McDonald JF. Characterization and potential functional significance of human-chimpanzee large INDEL variation. Mobile Dna. 2: 13. PMID 22024410 DOI: 10.1186/1759-8753-2-13 |
0.783 |
|
| 2011 |
Shahab SW, Matyunina LV, Mezencev R, Walker LD, Bowen NJ, Benigno BB, McDonald JF. Evidence for the complexity of microRNA-mediated regulation in ovarian cancer: a systems approach. Plos One. 6: e22508. PMID 21811625 DOI: 10.1371/Journal.Pone.0022508 |
0.761 |
|
| 2011 |
Chen J, Huang A, Nakamura T, Matyunina L, Yu J, Li J, Singh J, McDonald JF, Chronos N, Hou D. MICROARRAY GENE EXPRESSION PROFILING IDENTIFIES PATHOPHYSIOLOGICAL VASCULAR RESPONSES TO IMPLANTATION OF OVERLAPPING DRUG-ELUTING STENTS INTO PORCINE CORONARY ARTERIES Journal of the American College of Cardiology. 57: E1693. DOI: 10.1016/S0735-1097(11)61693-8 |
0.644 |
|
| 2010 |
Liu Y, Chen Y, Momin A, Shaner R, Wang E, Bowen NJ, Matyunina LV, Walker LD, McDonald JF, Sullards MC, Merrill AH. Elevation of sulfatides in ovarian cancer: an integrated transcriptomic and lipidomic analysis including tissue-imaging mass spectrometry. Molecular Cancer. 9: 186. PMID 20624317 DOI: 10.1186/1476-4598-9-186 |
0.675 |
|
| 2010 |
Dickerson EB, Blackburn WH, Smith MH, Kapa LB, Lyon LA, McDonald JF. Chemosensitization of cancer cells by siRNA using targeted nanogel delivery. Bmc Cancer. 10: 10. PMID 20064265 DOI: 10.1186/1471-2407-10-10 |
0.301 |
|
| 2010 |
Scarberry KE, Dickerson EB, Zhang ZJ, Benigno BB, McDonald JF. Selective removal of ovarian cancer cells from human ascites fluid using magnetic nanoparticles. Nanomedicine : Nanotechnology, Biology, and Medicine. 6: 399-408. PMID 19969103 DOI: 10.1016/j.nano.2009.11.003 |
0.312 |
|
| 2010 |
Abbott KL, Lim JM, Wells L, Benigno BB, McDonald JF, Pierce M. Identification of candidate biomarkers with cancer-specific glycosylation in the tissue and serum of endometrioid ovarian cancer patients by glycoproteomic analysis. Proteomics. 10: 470-81. PMID 19953551 DOI: 10.1002/pmic.200900537 |
0.321 |
|
| 2009 |
Bowen NJ, Walker LD, Matyunina LV, Logani S, Totten KA, Benigno BB, McDonald JF. Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells. Bmc Medical Genomics. 2: 71. PMID 20040092 DOI: 10.1186/1755-8794-2-71 |
0.705 |
|
| 2009 |
Arora G, Polavarapu N, McDonald JF. Did natural selection for increased cognitive ability in humans lead to an elevated risk of cancer? Medical Hypotheses. 73: 453-6. PMID 19409719 DOI: 10.1016/J.Mehy.2009.03.035 |
0.766 |
|
| 2009 |
Carpenedo RL, Bratt-Leal AM, Marklein RA, Seaman SA, Bowen NJ, McDonald JF, McDevitt TC. Homogeneous and organized differentiation within embryoid bodies induced by microsphere-mediated delivery of small molecules. Biomaterials. 30: 2507-15. PMID 19162317 DOI: 10.1016/J.Biomaterials.2009.01.007 |
0.652 |
|
| 2009 |
Bowen NJ, Walker LD, Matyunina LV, Logani S, Totten KA, Benigno BB, McDonald JF. Abstract C3: Gene expression profiling supports the hypothesis that human ovarian surface epithelia are pluripotent and capable of serving as ovarian cancer initiating cells Cancer Research. 69. DOI: 10.1158/0008-5472.Fbcr09-C3 |
0.707 |
|
| 2008 |
Scharer CD, Laycock N, Osunkoya AO, Logani S, McDonald JF, Benigno BB, Moreno CS. Aurora kinase inhibitors synergize with paclitaxel to induce apoptosis in ovarian cancer cells. Journal of Translational Medicine. 6: 79. PMID 19077237 DOI: 10.1186/1479-5876-6-79 |
0.303 |
|
| 2008 |
Abbott KL, Nairn AV, Hall EM, Horton MB, McDonald JF, Moremen KW, Dinulescu DM, Pierce M. Focused glycomic analysis of the N-linked glycan biosynthetic pathway in ovarian cancer. Proteomics. 8: 3210-20. PMID 18690643 DOI: 10.1002/Pmic.200800157 |
0.339 |
|
| 2008 |
Arakaki AK, Mezencev R, Bowen NJ, Huang Y, McDonald JF, Skolnick J. Identification of metabolites with anticancer properties by computational metabolomics. Molecular Cancer. 7: 57. PMID 18559081 DOI: 10.1186/1476-4598-7-57 |
0.691 |
|
| 2008 |
Matyunina LV, Bowen NJ, McDonald JF. LTR retrotransposons and the evolution of dosage compensation in Drosophila. Bmc Molecular Biology. 9: 55. PMID 18533037 DOI: 10.1186/1471-2199-9-55 |
0.677 |
|
| 2008 |
Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK. Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. Bmc Genomics. 9: 226. PMID 18485226 DOI: 10.1186/1471-2164-9-226 |
0.78 |
|
| 2008 |
Huda A, Polavarapu N, Jordan IK, McDonald JF. Endogenous retroviruses of the chicken genome. Biology Direct. 3: 9. PMID 18361801 DOI: 10.1186/1745-6150-3-9 |
0.776 |
|
| 2007 |
Piriyapongsa J, Polavarapu N, Borodovsky M, McDonald J. Exonization of the LTR transposable elements in human genome. Bmc Genomics. 8: 291. PMID 17725822 DOI: 10.1186/1471-2164-8-291 |
0.777 |
|
| 2007 |
Moreno CS, Matyunina L, Dickerson EB, Schubert N, Bowen NJ, Logani S, Benigno BB, McDonald JF. Evidence that p53-mediated cell-cycle-arrest inhibits chemotherapeutic treatment of ovarian carcinomas. Plos One. 2: e441. PMID 17505532 DOI: 10.1371/Journal.Pone.0000441 |
0.653 |
|
| 2007 |
Menendez L, Walker D, Matyunina LV, Dickerson EB, Bowen NJ, Polavarapu N, Benigno BB, McDonald JF. Identification of candidate methylation-responsive genes in ovarian cancer. Molecular Cancer. 6: 10. PMID 17254359 DOI: 10.1186/1476-4598-6-10 |
0.781 |
|
| 2007 |
Bowen NJ, Logani S, Dickerson EB, Kapa LB, Akhtar M, Benigno BB, McDonald JF. Emerging roles for PAX8 in ovarian cancer and endosalpingeal development. Gynecologic Oncology. 104: 331-7. PMID 17064757 DOI: 10.1016/J.Ygyno.2006.08.052 |
0.693 |
|
| 2006 |
Polavarapu N, Bowen NJ, McDonald JF. Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses. Genome Biology. 7: R51. PMID 16805923 DOI: 10.1186/Gb-2006-7-6-R51 |
0.777 |
|
| 2006 |
Polavarapu N, Bowen NJ, McDonald JF. Newly identified families of human endogenous retroviruses. Journal of Virology. 80: 4640-2. PMID 16611924 DOI: 10.1128/Jvi.80.9.4640-4642.2006 |
0.773 |
|
| 2006 |
Ganko EW, Greene CS, Lewis JA, Bhattacharjee V, McDonald JF. LTR retrotransposon-gene associations in Drosophila melanogaster. Journal of Molecular Evolution. 62: 111-20. PMID 16408244 DOI: 10.1007/S00239-004-0312-4 |
0.357 |
|
| 2006 |
DeBarry JD, Ganko EW, McCarthy EM, McDonald JF. The contribution of LTR retrotransposon sequences to gene evolution in Mus musculus. Molecular Biology and Evolution. 23: 479-81. PMID 16368779 DOI: 10.1093/molbev/msj076 |
0.359 |
|
| 2005 |
McDonald JF, Matzke MA, Matzke AJ. Host defenses to transposable elements and the evolution of genomic imprinting. Cytogenetic and Genome Research. 110: 242-9. PMID 16093678 DOI: 10.1159/000084958 |
0.335 |
|
| 2004 |
Warrenfeltz S, Pavlik S, Datta S, Kraemer ET, Benigno B, McDonald JF. Gene expression profiling of epithelial ovarian tumours correlated with malignant potential. Molecular Cancer. 3: 27. PMID 15471544 DOI: 10.1186/1476-4598-3-27 |
0.355 |
|
| 2004 |
Calhoun JD, Rao RR, Warrenfeltz S, Rekaya R, Dalton S, McDonald J, Stice SL. Transcriptional profiling of initial differentiation events in human embryonic stem cells. Biochemical and Biophysical Research Communications. 323: 453-64. PMID 15369773 DOI: 10.1016/j.bbrc.2004.08.117 |
0.332 |
|
| 2004 |
Gao L, McCarthy EM, Ganko EW, McDonald JF. Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences. Bmc Genomics. 5: 18. PMID 15040813 DOI: 10.1186/1471-2164-5-18 |
0.342 |
|
| 2004 |
Franchini LF, Ganko EW, McDonald JF. Retrotransposon-gene associations are widespread among D. melanogaster populations. Molecular Biology and Evolution. 21: 1323-31. PMID 15014149 DOI: 10.1093/molbev/msh116 |
0.318 |
|
| 2004 |
McCarthy EM, McDonald JF. Long terminal repeat retrotransposons of Mus musculus. Genome Biology. 5: R14. PMID 15003117 DOI: 10.1186/gb-2004-5-3-r14 |
0.346 |
|
| 2003 |
Ganko EW, Bhattacharjee V, Schliekelman P, McDonald JF. Evidence for the contribution of LTR retrotransposons to C. elegans gene evolution. Molecular Biology and Evolution. 20: 1925-31. PMID 12885961 DOI: 10.1093/Molbev/Msg200 |
0.338 |
|
| 2003 |
McCarthy EM, McDonald JF. LTR_STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics (Oxford, England). 19: 362-7. PMID 12584121 DOI: 10.1093/bioinformatics/btf878 |
0.303 |
|
| 2002 |
McCarthy EM, Liu J, Lizhi G, McDonald JF. Long terminal repeat retrotransposons of Oryza sativa. Genome Biology. 3: RESEARCH0053. PMID 12372141 DOI: 10.1186/Gb-2002-3-10-Research0053 |
0.337 |
|
| 2002 |
McCollum AM, Ganko EW, Barrass PA, Rodriguez JM, McDonald JF. Evidence for the adaptive significance of an LTR retrotransposon sequence in a Drosophila heterochromatic gene. Bmc Evolutionary Biology. 2: 5. PMID 11914129 DOI: 10.1186/1471-2148-2-5 |
0.364 |
|
| 2002 |
Jordan IK, McDonald JF. A Biologically Active Family of Human Endogenous Retroviruses Evolved from an Ancient Inactive Lineage Genome Letters. 1: 105-109. DOI: 10.1166/GL.2002.011 |
0.408 |
|
| 2001 |
Ganko EW, Fielman KT, McDonald JF. Evolutionary history of Cer elements and their impact on the C. elegans genome. Genome Research. 11: 2066-74. PMID 11731497 DOI: 10.1101/gr.196201 |
0.346 |
|
| 2001 |
Bowen NJ, McDonald JF. Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Research. 11: 1527-40. PMID 11544196 DOI: 10.1101/Gr.164201 |
0.693 |
|
| 1999 |
Jordan IK, McDonald JF. Comparative genomics and evolutionary dynamics of Saccharomyces cerevisiae Ty elements. Genetica. 107: 3-13. PMID 10952193 DOI: 10.1007/978-94-011-4156-7_2 |
0.527 |
|
| 1999 |
Jordan IK, Matyunina LV, McDonald JF. Evidence for the recent horizontal transfer of long terminal repeat retrotransposon. Proceedings of the National Academy of Sciences of the United States of America. 96: 12621-5. PMID 10535972 DOI: 10.1073/Pnas.96.22.12621 |
0.487 |
|
| 1999 |
Bowen NJ, McDonald JF. Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements. Genome Research. 9: 924-35. PMID 10523521 DOI: 10.1101/Gr.9.10.924 |
0.69 |
|
| 1999 |
Jordan IK, McDonald JF. The role of interelement selection in Saccharomyces cerevisiae Ty element evolution. Journal of Molecular Evolution. 49: 352-7. PMID 10473776 DOI: 10.1007/Pl00006558 |
0.523 |
|
| 1999 |
Promislow DE, Jordan IK, McDonald JF. Genomic demography: a life-history analysis of transposable element evolution. Proceedings. Biological Sciences / the Royal Society. 266: 1555-60. PMID 10467744 DOI: 10.1098/rspb.1999.0815 |
0.451 |
|
| 1999 |
Jordan IK, McDonald JF. Phylogenetic perspective reveals abundant Ty1/Ty2 hybrid elements in the Saccharomyces cerevisiae genome. Molecular Biology and Evolution. 16: 419-22. PMID 10331268 DOI: 10.1093/Oxfordjournals.Molbev.A026123 |
0.498 |
|
| 1999 |
Jordan IK, McDonald JF. Tempo and mode of Ty element evolution in Saccharomyces cerevisiae. Genetics. 151: 1341-51. PMID 10101161 |
0.457 |
|
| 1999 |
Miller WJ, McDonald JF, Nouaud D, Anxolabéhère D. Molecular domestication — more than a sporadic episode in evolution Genetica. 107: 197-207. DOI: 10.1007/978-94-011-4156-7_22 |
0.312 |
|
| 1998 |
McDonald J. Reply from J.F. McDonald. Trends in Ecology and Evolution. 13: 241. PMID 21238282 DOI: 10.1016/S0169-5347(98)01371-8 |
0.332 |
|
| 1998 |
McDonald JF. Transposable elements, gene silencing and macroevolution. Trends in Ecology & Evolution. 13: 94-5. PMID 21238218 DOI: 10.1016/S0169-5347(97)01282-2 |
0.319 |
|
| 1998 |
Jordan IK, McDonald JF. Interelement selection in the regulatory region of the copia retrotransposon. Journal of Molecular Evolution. 47: 670-6. PMID 9847408 DOI: 10.1007/Pl00006425 |
0.518 |
|
| 1998 |
Jordan IK, McDonald JF. Evolution of the copia retrotransposon in the Drosophila melanogaster species subgroup. Molecular Biology and Evolution. 15: 1160-71. PMID 9729880 DOI: 10.1093/Oxfordjournals.Molbev.A026023 |
0.493 |
|
| 1998 |
Jordan IK, McDonald JF. Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements. Journal of Molecular Evolution. 47: 14-20. PMID 9664692 DOI: 10.1007/Pl00006358 |
0.533 |
|
| 1998 |
Wilson S, Matyunina LV, McDonald JF. An enhancer region within the copia untranslated leader contains binding sites for Drosophila regulatory proteins. Gene. 209: 239-46. PMID 9524274 DOI: 10.1016/S0378-1119(98)00048-1 |
0.3 |
|
| 1997 |
Miller WJ, McDonald JF, Pinsker W. Molecular domestication of mobile elements. Genetica. 100: 261-70. PMID 9440279 DOI: 10.1023/A:1018306317836 |
0.349 |
|
| 1997 |
McDonald JF, Matyunina LV, Wilson S, Jordan IK, Bowen NJ, Miller WJ. LTR retrotransposons and the evolution of eukaryotic enhancers. Genetica. 100: 3-13. PMID 9440254 |
0.452 |
|
| 1997 |
McDonald JF, Matyunina LV, Wilson S, King Jordan I, Bowen NJ, Miller WJ. Genetica. 100: 3-13. DOI: 10.1023/A:1018392117410 |
0.633 |
|
| 1996 |
Matyunina LV, Jordan IK, McDonald JF. Naturally occurring variation in copia expression is due to both element (cis) and host (trans) regulatory variation. Proceedings of the National Academy of Sciences of the United States of America. 93: 7097-102. PMID 8692951 DOI: 10.1073/Pnas.93.14.7097 |
0.536 |
|
| 1995 |
Csink AK, McDonald JF. Analysis of copia sequence variation within and between Drosophila species. Molecular Biology and Evolution. 12: 83-93. PMID 7877499 DOI: 10.1093/Oxfordjournals.Molbev.A040193 |
0.737 |
|
| 1990 |
Csink AK, McDonald JF. copia expression is variable among natural populations of Drosophila. Genetics. 126: 375-85. PMID 1700962 |
0.742 |
|
| 1990 |
McDonald JF. Macroevolution and Retroviral ElementsInsertion of viral-like DNA segments may bring about rapid and dramatic changes in gene regulation and development Bioscience. 40: 183-191. DOI: 10.2307/1311363 |
0.3 |
|
| 1988 |
Su BC, Strand D, McDonough PG, McDonald JF. Temporal and constitutive expression of homeobox-2 gene (Hu-2), human heat shock gene (hsp-70), and oncogenes C-sis and N-myc in early human trophoblast. American Journal of Obstetrics and Gynecology. 159: 1195-1199. PMID 2461079 DOI: 10.1016/0002-9378(88)90446-2 |
0.327 |
|
| 1984 |
Ayala FJ, McDonald JF. Continuous variation: Possible role of regulatory genes Genetica. 52: 1-15. DOI: 10.1007/Bf00121808 |
0.484 |
|
| 1980 |
Marks RW, Brittnacher JG, McDonald JF, Prout T, Ayala FJ. Wineries, drosophila, alcohol, and Adh. Oecologia. 47: 141-144. PMID 28309643 DOI: 10.1007/BF00541790 |
0.412 |
|
| 1980 |
Hedrick PW, McDonald JF. Regulatory gene adaptation: an evolutionary model. Heredity. 45: 83-97. PMID 7440246 DOI: 10.1038/Hdy.1980.52 |
0.319 |
|
| 1979 |
Chambers GK, McDonald JF, McElfresh M, Ayala FJ. Alcohol-oxidizing enzymes in 13 Drosophila species. Biochemical Genetics. 16: 757-67. PMID 103541 DOI: 10.1007/BF00484733 |
0.41 |
|
| 1978 |
McDonald JF, Chambers GK, David J, Ayala FJ. Adaptive response due to changes in gene regulation: a study with Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 74: 4562-6. PMID 412190 DOI: 10.1073/Pnas.74.10.4562 |
0.456 |
|
| 1978 |
McDonald JF, Ayala FJ. Gene regulation in adaptive evolution. Canadian Journal of Genetics and Cytology. Journal Canadien De Genetique Et De Cytologie. 20: 159-75. PMID 100192 DOI: 10.1139/G78-018 |
0.5 |
|
| 1976 |
McDonald JF, Avise JC. Evidence for the adaptive significance of enzyme activity levels: interspecific variation in alpha-GPDH and ADH in Drosophila. Biochemical Genetics. 14: 347-55. PMID 822837 DOI: 10.1007/Bf00484773 |
0.472 |
|
| 1976 |
Avise JC, McDonald JF. Enzyme changes during development of holo- and hemi-metabolic insects. Comparative Biochemistry and Physiology. B, Comparative Biochemistry. 53: 393-7. PMID 815073 DOI: 10.1016/0305-0491(76)90347-3 |
0.452 |
|
| 1975 |
Fontdevila A, Mendez J, Ayala FJ, McDonald J. Maintenance of allozyme polymorphisms in experimental populations of Drosophila. Nature. 255: 149-51. PMID 1128678 DOI: 10.1038/255149A0 |
0.654 |
|
| 1975 |
McDonald JF, Ayala FJ. Molecular Study of Evolution—A Symposium Bioscience. 25: 812-813. DOI: 10.2307/1297232 |
0.396 |
|
| 1974 |
Mcdonald JF, Ayala FJ. Genetic response to environmental heterogeneity. Nature. 250: 572-574. PMID 4845657 DOI: 10.1038/250572A0 |
0.428 |
|
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