Year |
Citation |
Score |
2019 |
Zhou S, Weiß RG, Cheng LT, Dzubiella J, McCammon JA, Li B. Variational implicit-solvent predictions of the dry-wet transition pathways for ligand-receptor binding and unbinding kinetics. Proceedings of the National Academy of Sciences of the United States of America. PMID 31270236 DOI: 10.1073/Pnas.1902719116 |
0.301 |
|
2018 |
Ricci CG, Li B, Cheng LT, Dzubiella J, McCammon JA. Tailoring the Variational Implicit Solvent Method for New Challenges: Biomolecular Recognition and Assembly. Frontiers in Molecular Biosciences. 5: 13. PMID 29484300 DOI: 10.3389/Fmolb.2018.00013 |
0.332 |
|
2018 |
Sun H, Zhou S, Cheng L, Li B. Numerical methods for solvent Stokes flow and solute-solvent interfacial dynamics of charged molecules Journal of Computational Physics. 374: 533-549. DOI: 10.1016/J.Jcp.2018.07.046 |
0.44 |
|
2017 |
Gravina Ricci C, Li B, Cheng LT, Dzubiella J, McCammon JA. 'Martinizing' the Variational Implicit Solvent Method (VISM): Solvation Free Energy for Coarse-Grained Proteins. The Journal of Physical Chemistry. B. PMID 28613904 DOI: 10.1016/J.Bpj.2017.11.1922 |
0.314 |
|
2016 |
Zhou S, Sun H, Cheng LT, Dzubiella J, Li B, McCammon JA. Stochastic level-set variational implicit-solvent approach to solute-solvent interfacial fluctuations. The Journal of Chemical Physics. 145: 054114. PMID 27497546 DOI: 10.1063/1.4959971 |
0.453 |
|
2016 |
Sun H, Zhou S, Moore DK, Cheng LT, Li B. Numerical Treatment of Stokes Solvent Flow and Solute-Solvent Interfacial Dynamics for Nonpolar Molecules. Journal of Scientific Computing. 67: 705-723. PMID 27365866 DOI: 10.1007/S10915-015-0099-Z |
0.391 |
|
2015 |
Zhou S, Cheng LT, Sun H, Che J, Dzubiella J, Li B, McCammon JA. LS-VISM: A software package for analysis of biomolecular solvation. Journal of Computational Chemistry. 36: 1047-59. PMID 25766844 DOI: 10.1002/Jcc.23890 |
0.385 |
|
2014 |
Zhou S, Cheng LT, Dzubiella J, Li B, McCammon JA. Variational Implicit Solvation with Poisson-Boltzmann Theory. Journal of Chemical Theory and Computation. 10: 1454-1467. PMID 24803864 DOI: 10.1021/Ct401058W |
0.335 |
|
2014 |
Guo Z, Li B, Dzubiella J, Cheng LT, McCammon JA, Che J. Heterogeneous Hydration of p53/MDM2 Complex. Journal of Chemical Theory and Computation. 10: 1302-1313. PMID 24803860 DOI: 10.1021/Ct400967M |
0.302 |
|
2013 |
Zhou S, Rogers KE, de Oliveira CA, Baron R, Cheng LT, Dzubiella J, Li B, McCammon JA. Variational Implicit-Solvent Modeling of Host-Guest Binding: A Case Study on Cucurbit[7]uril| Journal of Chemical Theory and Computation. 9: 4195-4204. PMID 24039554 DOI: 10.1021/Ct400232M |
0.304 |
|
2013 |
Cheng LT, Li B, White M, Zhou S. Motion of a Cylindrical Dielectric Boundary. Siam Journal On Applied Mathematics. 73: 594-616. PMID 23885130 DOI: 10.1137/120867986 |
0.327 |
|
2013 |
Guo Z, Li B, Dzubiella J, Cheng LT, McCammon JA, Che J. Evaluation of Hydration Free Energy by Level-Set Variational Implicit-Solvent Model with Coulomb-Field Approximation. Journal of Chemical Theory and Computation. 9: 1778-1787. PMID 23505345 DOI: 10.1021/Ct301087W |
0.328 |
|
2013 |
Cheng LT, Dong B, Men C, Jia X, Jiang S. Binary level-set shape optimization model and algorithm for volumetric modulated arc therapy in radiotherapy treatment Siam Journal On Scientific Computing. 35: B1321-B1340. DOI: 10.1137/120890430 |
0.381 |
|
2012 |
Wang Z, Che J, Cheng LT, Dzubiella J, Li B, McCammon JA. Level-Set Variational Implicit-Solvent Modeling of Biomolecules with the Coulomb-Field Approximation. Journal of Chemical Theory and Computation. 8: 386-397. PMID 22346739 DOI: 10.1021/Ct200647J |
0.43 |
|
2011 |
Cheng HB, Cheng LT, Li B. Yukawa-Field Approximation of Electrostatic Free Energy and Dielectric Boundary Force. Nonlinearity. 24: 3215. PMID 23853423 DOI: 10.1088/0951-7715/24/11/011 |
0.312 |
|
2010 |
Cheng LT, Li B, Wang Z. Level-Set Minimization of Potential Controlled Hadwiger Valuations for Molecular Solvation. Journal of Computational Physics. 229: 8497-8510. PMID 22323839 DOI: 10.1016/J.Jcp.2010.07.032 |
0.442 |
|
2009 |
Cheng LT, Xie Y, Dzubiella J, McCammon JA, Che J, Li B. Coupling the Level-Set Method with Molecular Mechanics for Variational Implicit Solvation of Nonpolar Molecules. Journal of Chemical Theory and Computation. 5: 257-266. PMID 20150952 DOI: 10.1021/Ct800297D |
0.378 |
|
2009 |
Cheng LT, Wang Z, Setny P, Dzubiella J, Li B, McCammon JA. Interfaces and hydrophobic interactions in receptor-ligand systems: A level-set variational implicit solvent approach. The Journal of Chemical Physics. 131: 144102. PMID 19831428 DOI: 10.1063/1.3242274 |
0.341 |
|
2008 |
Cheng L, Tsai Y. Redistancing by flow of time dependent eikonal equation Journal of Computational Physics. 227: 4002-4017. DOI: 10.1016/J.Jcp.2007.12.018 |
0.67 |
|
2007 |
Cheng LT, Dzubiella J, McCammon JA, Li B. Application of the level-set method to the implicit solvation of nonpolar molecules. The Journal of Chemical Physics. 127: 084503. PMID 17764265 DOI: 10.1063/1.2757169 |
0.41 |
|
2007 |
Cheng L. Efficient level set methods for constructing wavefronts in three spatial dimensions Journal of Computational Physics. 226: 2250-2270. DOI: 10.1016/J.Jcp.2007.07.019 |
0.429 |
|
2005 |
Cheng H, Cheng L, Yau S. Minimization with the affine normal direction Communications in Mathematical Sciences. 3: 561-574. DOI: 10.4310/Cms.2005.V3.N4.A6 |
0.31 |
|
2005 |
Cheng L, Tsai Y. Visibility Optimization Using Variational Approaches Communications in Mathematical Sciences. 3: 425-451. DOI: 10.4310/Cms.2005.V3.N3.A8 |
0.382 |
|
2005 |
Liu H, Cheng L, Osher S. A Level Set Framework for Capturing Multi-Valued Solutions of Nonlinear First-Order Equations Journal of Scientific Computing. 29: 353-373. DOI: 10.1007/S10915-005-9016-1 |
0.627 |
|
2004 |
Tsai Y, Cheng L, Osher S, Burchard P, Sapiro G. Visibility and its dynamics in a PDE based implicit framework Journal of Computational Physics. 199: 260-290. DOI: 10.1016/J.Jcp.2004.02.015 |
0.56 |
|
2003 |
Cheng L, Liu H, Osher S. Computational high-frequency wave propogation using the level-set method with applications to the semi-classical limit of the Schrödinger equations Communications in Mathematical Sciences. 1: 593-621. DOI: 10.4310/Cms.2003.V1.N3.A10 |
0.598 |
|
2003 |
Qian J, Cheng L, Osher S. Level Set Based Eulerian Methods For Multivalued Traveltimes In Both Isotropic And Anisotropic Media Seg Technical Program Expanded Abstracts. 1801-1804. DOI: 10.1190/1.1817663 |
0.382 |
|
2003 |
Tsai YR, Cheng L, Osher S, Zhao H. Fast Sweeping Algorithms for a Class of Hamilton--Jacobi Equations Siam Journal On Numerical Analysis. 41: 673-694. DOI: 10.1137/S0036142901396533 |
0.685 |
|
2003 |
Cheng L. Journal of Scientific Computing. 19: 123-138. DOI: 10.1023/A:1025343723019 |
0.428 |
|
2003 |
Jin H, Yezzi AJ, Tsai YH, Cheng LT, Soatto S. Estimation of 3D Surface Shape and Smooth Radiance from 2D Images: A Level Set Approach Journal of Scientific Computing. 19: 267-292. DOI: 10.1023/A:1025308109816 |
0.405 |
|
2003 |
Qian J, Cheng L, Osher S. A level set-based Eulerian approach for anisotropic wave propagation Wave Motion. 37: 365-379. DOI: 10.1016/S0165-2125(02)00101-4 |
0.578 |
|
2002 |
Osher S, Cheng L, Kang M, Shim H, Tsai Y. Geometric Optics in a Phase-Space-Based Level Set and Eulerian Framework Journal of Computational Physics. 179: 622-648. DOI: 10.1006/Jcph.2002.7080 |
0.71 |
|
2002 |
Gibou F, Fedkiw RP, Cheng LT, Kang M. A second-order-accurate symmetric discretization of the Poisson equation on irregular domains Journal of Computational Physics. 176: 205-227. DOI: 10.1006/Jcph.2001.6977 |
0.649 |
|
2002 |
Cheng L, Burchard P, Merriman B, Osher S. Motion of Curves Constrained on Surfaces Using a Level-Set Approach Journal of Computational Physics. 175: 604-644. DOI: 10.1006/Jcph.2001.6960 |
0.526 |
|
2001 |
Bertalmío M, Cheng LT, Osher S, Sapiro G. Variational problems and partial differential equations on implicit surfaces Journal of Computational Physics. 174: 759-780. DOI: 10.1006/Jcph.2001.6937 |
0.582 |
|
2001 |
Burchard P, Cheng L, Merriman B, Osher S. Motion of Curves in Three Spatial Dimensions Using a Level Set Approach Journal of Computational Physics. 170: 720-741. DOI: 10.1006/Jcph.2001.6758 |
0.583 |
|
2001 |
Chen S, Merriman B, Kang M, Caflisch RE, Ratsch C, Cheng LT, Gyure M, Fedkiw RP, Anderson C, Osher S. A level set method for Thin Film epitaxial growth Journal of Computational Physics. 167: 475-500. DOI: 10.1006/Jcph.2000.6689 |
0.51 |
|
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