| Year |
Citation |
Score |
| 2019 |
Khaled M, Gorfe A, Sayyed-Ahmad A. Conformational and Dynamical Effects of Tyr32 Phosphorylation in K-Ras: Molecular Dynamics Simulation and Markov State Models Analysis. The Journal of Physical Chemistry. B. PMID 31419909 DOI: 10.1021/Acs.Jpcb.9B05768 |
0.362 |
|
| 2017 |
Sarkar-Banerjee S, Sayyed-Ahmad A, Prakash P, Cho KJ, Waxham MN, Hancock JF, Gorfe AA. Spatiotemporal analysis of K-Ras plasma membrane interactions reveals multiple high order homo-oligomeric complexes. Journal of the American Chemical Society. PMID 28863262 DOI: 10.1021/Jacs.7B06292 |
0.306 |
|
| 2017 |
Sayyed-Ahmad A, Prakash P, Gorfe AA. Distinct dynamics and interaction patterns in H- and K-Ras oncogenic P-loop mutants. Proteins. PMID 28498561 DOI: 10.1002/Prot.25317 |
0.321 |
|
| 2017 |
Sayyed-Ahmad A, Gorfe AA. Mixed-probe simulation and probe-derived surface topography map analysis for ligand binding site identification. Journal of Chemical Theory and Computation. PMID 28252958 DOI: 10.1021/Acs.Jctc.7B00130 |
0.302 |
|
| 2017 |
Prakash P, Sayyed-Ahmad A, Cho KJ, Dolino DM, Chen W, Li H, Grant BJ, Hancock JF, Gorfe AA. Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers. Scientific Reports. 7: 40109. PMID 28067274 DOI: 10.1038/Srep40109 |
0.336 |
|
| 2016 |
Sayyed-Ahmad A, Cho KJ, Hancock JF, Gorfe AA. Computational Equilibrium Thermodynamic and Kinetic Analysis of K-Ras Dimerization through an Effector Binding Surface Suggests Limited Functional Role. The Journal of Physical Chemistry. B. PMID 27072779 DOI: 10.1021/Acs.Jpcb.6B02403 |
0.326 |
|
| 2014 |
Naddaf L, Sayyed-Ahmad A. Intracellular crowding effects on the self-association of the bacterial cell division protein FtsZ. Archives of Biochemistry and Biophysics. 564: 12-9. PMID 25218002 DOI: 10.1016/J.Abb.2014.08.016 |
0.395 |
|
| 2009 |
Sayyed-Ahmad A, Kaznessis YN. Determining the orientation of protegrin-1 in DLPC bilayers using an implicit solvent-membrane model. Plos One. 4: e4799. PMID 19277199 DOI: 10.1371/Journal.Pone.0004799 |
0.309 |
|
| 2009 |
Bolintineanu DS, Sayyed-Ahmad A, Davis HT, Kaznessis YN. Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore. Plos Computational Biology. 5: e1000277. PMID 19180178 DOI: 10.1371/Journal.Pcbi.1000277 |
0.317 |
|
| 2008 |
Sayyed-Ahmad A, Miao Y, Ortoleva P. Poisson-Boltzmann theory of bionanosystems Communications in Computational Physics. 3: 1100-1116. |
0.552 |
|
| 2007 |
Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory Bmc Bioinformatics. 8. PMID 17244365 DOI: 10.1186/1471-2105-8-20 |
0.551 |
|
| 2007 |
Lee J, Sayyed-Ahmad A, Sheen DH. Basin model inversion using information theory and seismic data Geophysics. 72: R99-R108. DOI: 10.1190/1.2757738 |
0.411 |
|
| 2004 |
Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Efficient solution technique for solving the Poisson-Boltzmann equation Journal of Computational Chemistry. 25: 1068-1074. PMID 15067682 DOI: 10.1002/Jcc.20039 |
0.545 |
|
| 2003 |
Ortoleva P, Berry E, Brun Y, Fan J, Fontus M, Hubbard K, Jaqaman K, Jarymowycz L, Navid A, Sayyed-Ahmad A, Shreif Z, Stanley F, Tuncay K, Weitzke E, Wu LC. The Karyote physico-chemical genomic, proteomic, metabolic cell modeling system. Omics : a Journal of Integrative Biology. 7: 269-83. PMID 14583116 DOI: 10.1089/153623103322452396 |
0.338 |
|
| 2003 |
Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Toward automated cell model development through information theory Journal of Physical Chemistry A. 107: 10554-10565. DOI: 10.1021/Jp0302921 |
0.691 |
|
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