Zachary B. Katz, Ph.D. - Related publications

2013 Biomedical Sciences Yeshiva University, New York, NY, United States 
Cell Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Kim NY, Lee S, Yu J, Kim N, Won SS, Park H, Heo WD. Optogenetic control of mRNA localization and translation in live cells. Nature Cell Biology. PMID 32066905 DOI: 10.1038/s41556-020-0468-1   
2020 Chaudhuri A, Das S, Das B. Localization elements and zip codes in the intracellular transport and localization of messenger RNAs in Saccharomyces cerevisiae. Wiley Interdisciplinary Reviews. Rna. e1591. PMID 32101377 DOI: 10.1002/wrna.1591   
2020 Wu H, Zhou J, Zhu T, Cohen I, Dictenberg J. A Kinesin adapter directly mediates dendritic mRNA localization during neural development in mice. The Journal of Biological Chemistry. PMID 32111743 DOI: 10.1074/jbc.RA118.005616   
2020 Haneke K, Schott J, Lindner D, Hollensen AK, Damgaard CK, Mongis C, Knop M, Palm W, Ruggieri A, Stoecklin G. CDK1 couples proliferation with protein synthesis. The Journal of Cell Biology. 219. PMID 32040547 DOI: 10.1083/jcb.201906147   
2020 Shao M, Lu T, Zhang C, Zhang YZ, Kong SH, Shi DL. Rbm24 controls poly(A) tail length and translation efficiency of mRNAs in the lens via cytoplasmic polyadenylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32170011 DOI: 10.1073/pnas.1917922117   
2020 Herrero AB, Quwaider D, Corchete LA, Mateos MV, García-Sanz R, Gutiérrez NC. FAM46C controls antibody production by the polyadenylation of immunoglobulin mRNAs and inhibits cell migration in multiple myeloma. Journal of Cellular and Molecular Medicine. PMID 32141701 DOI: 10.1111/jcmm.15078   
2020 Sikorski PJ, Warminski M, Kubacka D, Ratajczak T, Nowis D, Kowalska J, Jemielity J. The identity and methylation status of the first transcribed nucleotide in eukaryotic mRNA 5' cap modulates protein expression in living cells. Nucleic Acids Research. PMID 31984425 DOI: 10.1093/nar/gkaa032   
2020 Ghaemi Z, Peterson JR, Gruebele M, Luthey-Schulten Z. An in-silico human cell model reveals the influence of spatial organization on RNA splicing. Plos Computational Biology. 16: e1007717. PMID 32210422 DOI: 10.1371/journal.pcbi.1007717   
2020 Lambert JM, Ashi MO, Srour N, Delpy L, Saulière J. Mechanisms and Regulation of Nonsense-Mediated mRNA Decay and Nonsense-Associated Altered Splicing in Lymphocytes. International Journal of Molecular Sciences. 21. PMID 32079193 DOI: 10.3390/ijms21041335   
2020 Wang J, Ganaie SS, Cheng F, Xu P, Ning K, Wang X, Kleiboeker S, Cheng S, Qiu J. RNA Binding Motif Protein RBM45 Regulates Expression of the 11-Kilodalton Protein of Parvovirus B19 through Binding to Novel Intron Splicing Enhancers. Mbio. 11. PMID 32156816 DOI: 10.1128/mBio.00192-20   
2020 Salovska B, Zhu H, Gandhi T, Frank M, Li W, Rosenberger G, Wu C, Germain PL, Zhou H, Hodny Z, Reiter L, Liu Y. Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation. Molecular Systems Biology. 16: e9170. PMID 32175694 DOI: 10.15252/msb.20199170   
2020 Singh D, Murashko ON, Lin-Chao S. Post-transcriptional regulation of by protein-RNA interaction mediated by ribosomal protein L4 in . Journal of Bacteriology. PMID 32123036 DOI: 10.1128/JB.00799-19   
2020 Boo SH, Kim YK. The emerging role of RNA modifications in the regulation of mRNA stability. Experimental & Molecular Medicine. PMID 32210357 DOI: 10.1038/s12276-020-0407-z   
2020 Takahashi A, Suzuki T, Soeda S, Takaoka S, Kobori S, Yamaguchi T, Mohamed HMA, Yanagiya A, Abe T, Shigeta M, Furuta Y, Kuba K, Yamamoto T. The CCR4-NOT complex maintains liver homeostasis through mRNA deadenylation. Life Science Alliance. 3. PMID 32238456 DOI: 10.26508/lsa.201900494   
2020 Maquat LE. Short interspersed nuclear element (SINE)-mediated post-transcriptional effects on human and mouse gene expression: SINE-UP for active duty. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190344. PMID 32075563 DOI: 10.1098/rstb.2019.0344   
2020 Parr CJC, Wada S, Kotake K, Kameda S, Matsuura S, Sakashita S, Park S, Sugiyama H, Kuang Y, Saito H. N 1-Methylpseudouridine substitution enhances the performance of synthetic mRNA switches in cells. Nucleic Acids Research. PMID 32090264 DOI: 10.1093/nar/gkaa070   
2020 Wang B, Shi L, Men J, Li Q, Hou X, Wang C, Zhao F. Controlled synchronization of prolactin/STAT5 and AKT1/mTOR in bovine mammary epithelial cells. In Vitro Cellular & Developmental Biology. Animal. PMID 32078727 DOI: 10.1007/s11626-020-00432-x   
2020 Cho SY, Lee S, Yeom J, Kim HJ, Lee JH, Shin JW, Kwon MA, Lee KB, Jeong EM, Ahn HS, Shin DM, Kim K, Kim IG. Transglutaminase 2 mediates hypoxia-induced selective mRNA translation via polyamination of 4EBPs. Life Science Alliance. 3. PMID 32075852 DOI: 10.26508/lsa.201900565   
2020 Sakamoto A, Sahara J, Kawai G, Yamamoto K, Ishihama A, Uemura T, Igarashi K, Kashiwagi K, Terui Y. Cytotoxic Mechanism of Excess Polyamines Functions through Translational Repression of Specific Proteins Encoded by Polyamine Modulon. International Journal of Molecular Sciences. 21. PMID 32244348 DOI: 10.3390/ijms21072406   
2020 Imperatore JA, McAninch DS, Valdez-Sinon AN, Bassell GJ, Mihailescu MR. FUS Recognizes G Quadruplex Structures Within Neuronal mRNAs. Frontiers in Molecular Biosciences. 7: 6. PMID 32118033 DOI: 10.3389/fmolb.2020.00006   
2020 Biever A, Glock C, Tushev G, Ciirdaeva E, Dalmay T, Langer JD, Schuman EM. Monosomes actively translate synaptic mRNAs in neuronal processes. Science (New York, N.Y.). 367. PMID 32001627 DOI: 10.1126/science.aay4991   
2020 Rodrigues DC, Mufteev M, Weatheritt RJ, Djuric U, Ha KCH, Ross PJ, Wei W, Piekna A, Sartori MA, Byres L, Mok RSF, Zaslavsky K, Pasceri P, Diamandis P, Morris Q, et al. Shifts in Ribosome Engagement Impact Key Gene Sets in Neurodevelopment and Ubiquitination in Rett Syndrome. Cell Reports. 30: 4179-4196.e11. PMID 32209477 DOI: 10.1016/j.celrep.2020.02.107   
2020 Hsiao WY, Wang YT, Wang SW. Fission yeast Puf2, a Pumilio and FBF family of RNA-binding protein, links stress granules to processing bodies. Molecular and Cellular Biology. PMID 32071154 DOI: 10.1128/MCB.00589-19   
2020 Aseev LV, Koledinskaya LS, Boni IV. Autogenous regulation in vivo of the rpmE gene encoding ribosomal protein L31 (bL31), a key component of the protein-protein intersubunit bridge B1b. Rna (New York, N.Y.). PMID 32209634 DOI: 10.1261/rna.074237.119   
2020 Gosavi U, Srivastava A, Badjatia N, Günzl A. Rapid block of pre-mRNA splicing by chemical inhibition of analog-sensitive CRK9 in Trypanosoma brucei. Molecular Microbiology. PMID 32068297 DOI: 10.1111/mmi.14489   
2020 Wen WX, Mead AJ, Thongjuea S. Technological advances and computational approaches for alternative splicing analysis in single cells. Computational and Structural Biotechnology Journal. 18: 332-343. PMID 32099593 DOI: 10.1016/j.csbj.2020.01.009   
2020 Link AJ, Niu X, Weaver CM, Jennings JL, Duncan DT, McAfee KJ, Sammons M, Gerbasi VR, Farley AR, Fleischer TC, Browne CM, Samir P, Galassie A, Boone B. Targeted identification of protein interactions in eukaryotic mRNA translation. Proteomics. e1900177. PMID 32027465 DOI: 10.1002/pmic.201900177   
2020 Weng Y, Li C, Yang T, Hu B, Zhang M, Guo S, Xiao H, Liang XJ, Huang Y. The challenge and prospect of mRNA therapeutics landscape. Biotechnology Advances. 107534. PMID 32088327 DOI: 10.1016/j.biotechadv.2020.107534   
2020 Esparza M, Mor A, Niederstrasser H, White K, White A, Zhang K, Gao S, Wang J, Liang J, Sho S, Sakthivel R, Sathe AA, Xing C, Muñoz-Moreno R, Shay JW, et al. Chemical intervention of influenza virus mRNA nuclear export. Plos Pathogens. 16: e1008407. PMID 32240278 DOI: 10.1371/journal.ppat.1008407   
2020 Ding X, Meng S, Zhou J, Yang J, Li H, Zhou W. Translational Inhibition of α-Neurexin 2. Scientific Reports. 10: 3403. PMID 32099033 DOI: 10.1038/s41598-020-60289-8   
2020 Forrest ME, Pinkard O, Martin S, Sweet TJ, Hanson G, Coller J. Codon and amino acid content are associated with mRNA stability in mammalian cells. Plos One. 15: e0228730. PMID 32053646 DOI: 10.1371/journal.pone.0228730   
2020 Metz PJ, Ching KA, Xie T, Delgado Cuenca P, Niessen S, Tatlock JH, Jensen-Pergakes K, Murray BW. Symmetric Arginine Dimethylation Is Selectively Required for mRNA Splicing and the Initiation of Type I and Type III Interferon Signaling. Cell Reports. 30: 1935-1950.e8. PMID 32049022 DOI: 10.1016/j.celrep.2020.01.054   
2020 Islam S, Sabharwal T, Wu S, Bullock TJ, Mehdy MC. Early dynamics of photosynthetic Lhcf2 and Lhcf15 transcription and mRNA stabilities in response to herbivory-related decadienal in Phaeodactylum tricornutum. Scientific Reports. 10: 2029. PMID 32029835 DOI: 10.1038/s41598-020-58885-9   
2020 Chen W, Lamb TM, Gomer RH. TGF-β1 increases sialidase 3 expression in human lung epithelial cells by decreasing its degradation and upregulating its translation. Experimental Lung Research. 1-6. PMID 32102576 DOI: 10.1080/01902148.2020.1733135   
2020 Jia J, Wang W, Kuang D, Lu C, Li N, Tong P, Han Y, Sun X, Dai J. mRNA Profiling Reveals Response Regulators of Decreased Fungal Keratitis Symptoms in a Tree Shrew Model. Gene. 144450. PMID 32057930 DOI: 10.1016/j.gene.2020.144450   
2020 Masek T, Del Llano E, Gahurova L, Kubelka M, Susor A, Roucova K, Lin CJ, Bruce AW, Pospisek M. Identifying the Translatome of Mouse NEBD-Stage Oocytes via SSP-Profiling; A Novel Polysome Fractionation Method. International Journal of Molecular Sciences. 21. PMID 32070012 DOI: 10.3390/ijms21041254   
2020 Arya S, Lin Q, Zhou N, Gao X, Huang JD. Strong Immune Responses Induced by Direct Local Injections of Modified mRNA-Lipid Nanocomplexes. Molecular Therapy. Nucleic Acids. 19: 1098-1109. PMID 32059336 DOI: 10.1016/j.omtn.2019.12.044   
2020 Arya S, Lin Q, Zhou N, Gao X, Huang JD. Strong Immune Responses Induced by Direct Local Injections of Modified mRNA-Lipid Nanocomplexes. Molecular Therapy. Nucleic Acids. 19: 1098-1109. PMID 32059336 DOI: 10.1016/j.omtn.2019.12.044   
2020 Kim DS, Challa S, Jones A, Kraus WL. PARPs and ADP-ribosylation in RNA biology: from RNA expression and processing to protein translation and proteostasis. Genes & Development. PMID 32029452 DOI: 10.1101/gad.334433.119   
2020 Laver JD, Ly J, Winn AK, Karaiskakis A, Lin S, Nie K, Benic G, Jaberi-Lashkari N, Cao WX, Khademi A, Westwood JT, Sidhu SS, Morris Q, Angers S, Smibert CA, et al. The RNA-Binding Protein Rasputin/G3BP Enhances the Stability and Translation of Its Target mRNAs. Cell Reports. 30: 3353-3367.e7. PMID 32160542 DOI: 10.1016/j.celrep.2020.02.066   
2020 Berman AJ, Thoreen CC, Dedeic Z, Chettle J, Roux PP, Sarah BP. Controversies around the function of LARP1. Rna Biology. 1-11. PMID 32233986 DOI: 10.1080/15476286.2020.1733787   
2020 Jiang Y, Cai NN, Zhao XX, Zhu WQ, Zhang J, Yang R, Tang B, Li ZY, Zhang XM. Decreased abundance of GDNF mRNA transcript in the immature Sertoli cells of cattle in response to protein kinase inhibitor staurosporine. Animal Reproduction Science. 214: 106303. PMID 32087919 DOI: 10.1016/j.anireprosci.2020.106303   
2020 Boer RE, Torrey ZR, Schneekloth JS. Chemical Modulation of Pre-mRNA Splicing in Mammalian Systems. Acs Chemical Biology. PMID 32191432 DOI: 10.1021/acschembio.0c00001   
2020 Samuels TJ, Arava Y, Järvelin AI, Robertson F, Lee JY, Yang L, Yang CP, Lee T, Ish-Horowicz D, Davis I. Neuronal upregulation of Prospero protein is driven by alternative mRNA polyadenylation and Syncrip-mediated mRNA stabilisation. Biology Open. PMID 32205310 DOI: 10.1242/bio.049684   
2020 Rizzotto D, Zaccara S, Rossi A, Galbraith MD, Andrysik Z, Pandey A, Sullivan KD, Quattrone A, Espinosa JM, Dassi E, Inga A. Nutlin-Induced Apoptosis Is Specified by a Translation Program Regulated by PCBP2 and DHX30. Cell Reports. 30: 4355-4369.e6. PMID 32234473 DOI: 10.1016/j.celrep.2020.03.011   
2020 Woo HH, Chambers SK. The alternative spliced 3'-UTR mediated differential secretion of macrophage colony stimulating factor in breast cancer cells. Biochemical and Biophysical Research Communications. PMID 32178869 DOI: 10.1016/j.bbrc.2020.03.007   
2020 Titlow J, Robertson F, Järvelin A, Ish-Horowicz D, Smith C, Gratton E, Davis I. Syncrip/hnRNP Q is required for activity-induced Msp300/Nesprin-1 expression and new synapse formation. The Journal of Cell Biology. 219. PMID 32040548 DOI: 10.1083/jcb.201903135   
2020 Chan HC, Lau YT, Ding Q, Li CK, Wong CM, Shaw PC, Waye MMY, Tsang SY. PinX1t, a Novel PinX1 Transcript Variant, Positively Regulates Cardiogenesis of Embryonic Stem Cells. Journal of the American Heart Association. 9: e010240. PMID 32157956 DOI: 10.1161/JAHA.118.010240   
2020 Abe T, Nagai R, Imataka H, Takeuchi-Tomita N. Reconstitution of yeast translation elongation and termination in vitro utilizing CrPV IRES-containing mRNA. Journal of Biochemistry. PMID 32053165 DOI: 10.1093/jb/mvaa021   
2020 Tuck AC, Rankova A, Arpat AB, Liechti LA, Hess D, Iesmantavicius V, Castelo-Szekely V, Gatfield D, Bühler M. Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation. Molecular Cell. PMID 32048998 DOI: 10.1016/j.molcel.2020.01.007