Nicola Neretti, Ph.D. - Publications

Affiliations: 
2001 Brown University, Providence, RI 
Area:
Learning & Memory

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 De Cecco M, Ito T, Petrashen AP, Elias AE, Skvir NJ, Criscione SW, Caligiana A, Brocculi G, Adney EM, Boeke JD, Le O, Beauséjour C, Ambati J, Ambati K, Simon M, ... ... Neretti N, et al. Author Correction: L1 drives IFN in senescent cells and promotes age-associated inflammation. Nature. PMID 31296937 DOI: 10.1038/s41586-019-1350-9  0.44
2019 Simon M, Van Meter M, Ablaeva J, Ke Z, Gonzalez RS, Taguchi T, De Cecco M, Leonova KI, Kogan V, Helfand SL, Neretti N, Roichman A, Cohen HY, Meer MV, Gladyshev VN, et al. LINE1 Derepression in Aged Wild-Type and SIRT6-Deficient Mice Drives Inflammation. Cell Metabolism. PMID 30853213 DOI: 10.1016/j.cmet.2019.02.014  0.44
2019 De Cecco M, Ito T, Petrashen AP, Elias AE, Skvir NJ, Criscione SW, Caligiana A, Brocculi G, Adney EM, Boeke JD, Le O, Beauséjour C, Ambati J, Ambati K, Simon M, ... ... Neretti N, et al. L1 drives IFN in senescent cells and promotes age-associated inflammation. Nature. 566: 73-78. PMID 30728521 DOI: 10.1038/s41586-018-0784-9  0.44
2016 Wood JG, Jones BC, Jiang N, Chang C, Hosier S, Wickremesinghe P, Garcia M, Hartnett DA, Burhenn L, Neretti N, Helfand SL. Chromatin-modifying genetic interventions suppress age-associated transposable element activation and extend life span in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. PMID 27621458 DOI: 10.1073/pnas.1604621113  0.84
2016 Nelson DM, Jaber-Hijazi F, Cole JJ, Robertson NA, Pawlikowski JS, Norris KT, Criscione SW, Pchelintsev NA, Piscitello D, Stong N, Rai TS, McBryan T, Otte GL, Nixon C, Clark W, ... ... Neretti N, et al. Mapping H4K20me3 onto the chromatin landscape of senescent cells indicates a function in control of cell senescence and tumor suppression through preservation of genetic and epigenetic stability. Genome Biology. 17: 158. PMID 27457071 DOI: 10.1186/s13059-016-1017-x  0.84
2016 Criscione SW, Theodosakis N, Micevic G, Cornish TC, Burns KH, Neretti N, Rodić N. Genome-wide characterization of human L1 antisense promoter-driven transcripts. Bmc Genomics. 17: 463. PMID 27301971 DOI: 10.1186/s12864-016-2800-5  0.84
2016 Criscione SW, De Cecco M, Siranosian B, Zhang Y, Kreiling JA, Sedivy JM, Neretti N. Reorganization of chromosome architecture in replicative cellular senescence. Science Advances. 2: e1500882. PMID 26989773 DOI: 10.1126/sciadv.1500882  0.84
2015 Boylan JM, Sanders JA, Neretti N, Gruppuso PA. Profiling of the fetal and adult rat liver transcriptome and translatome reveals discordant regulation by the mechanistic target of rapamycin (mTOR). American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 309: R22-35. PMID 25924882 DOI: 10.1152/ajpregu.00114.2015  0.84
2015 Antosh MP, Wijesinghe DD, Shrestha S, Lanou R, Huang YH, Hasselbacher T, Fox D, Neretti N, Sun S, Katenka N, Cooper LN, Andreev OA, Reshetnyak YK. Enhancement of radiation effect on cancer cells by gold-pHLIP. Proceedings of the National Academy of Sciences of the United States of America. 112: 5372-6. PMID 25870296 DOI: 10.1073/pnas.1501628112  0.84
2015 Hofmann JW, Zhao X, De Cecco M, Peterson AL, Pagliaroli L, Manivannan J, Hubbard GB, Ikeno Y, Zhang Y, Feng B, Li X, Serre T, Qi W, Van Remmen H, Miller RA, ... ... Neretti N, et al. Reduced expression of MYC increases longevity and enhances healthspan. Cell. 160: 477-88. PMID 25619689 DOI: 10.1016/j.cell.2014.12.016  0.84
2014 Antosh M, Fox D, Hasselbacher T, Lanou R, Neretti N, Cooper LN. Drosophila melanogaster show a threshold effect in response to radiation. Dose-Response : a Publication of International Hormesis Society. 12: 551-81. PMID 25552957 DOI: 10.2203/dose-response.13-047.Antosh  0.84
2014 Criscione SW, Zhang Y, Thompson W, Sedivy JM, Neretti N. Transcriptional landscape of repetitive elements in normal and cancer human cells. Bmc Genomics. 15: 583. PMID 25012247 DOI: 10.1186/1471-2164-15-583  0.84
2014 Whitaker R, Gil MP, Ding F, Tatar M, Helfand SL, Neretti N. Dietary switch reveals fast coordinated gene expression changes in Drosophila melanogaster. Aging. 6: 355-68. PMID 24864304  0.84
2014 Ding F, Gil MP, Franklin M, Ferreira J, Tatar M, Helfand SL, Neretti N. Transcriptional response to dietary restriction in Drosophila melanogaster. Journal of Insect Physiology. 69: 101-6. PMID 24819200 DOI: 10.1016/j.jinsphys.2014.05.002  0.84
2014 Lamming DW, Demirkan G, Boylan JM, Mihaylova MM, Peng T, Ferreira J, Neretti N, Salomon A, Sabatini DM, Gruppuso PA. Hepatic signaling by the mechanistic target of rapamycin complex 2 (mTORC2). Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 300-15. PMID 24072782 DOI: 10.1096/fj.13-237743  0.84
2013 De Cecco M, Criscione SW, Peterson AL, Neretti N, Sedivy JM, Kreiling JA. Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues. Aging. 5: 867-83. PMID 24323947  0.84
2013 Jiang N, Du G, Tobias E, Wood JG, Whitaker R, Neretti N, Helfand SL. Dietary and genetic effects on age-related loss of gene silencing reveal epigenetic plasticity of chromatin repression during aging. Aging. 5: 813-24. PMID 24243774  0.84
2013 Sedivy JM, Kreiling JA, Neretti N, De Cecco M, Criscione SW, Hofmann JW, Zhao X, Ito T, Peterson AL. Death by transposition - the enemy within? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 1035-43. PMID 24129940 DOI: 10.1002/bies.201300097  0.84
2013 Antosh M, Fox D, Cooper LN, Neretti N. CORaL: comparison of ranked lists for analysis of gene expression data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 433-43. PMID 23675929 DOI: 10.1089/cmb.2013.0017  0.84
2013 De Cecco M, Criscione SW, Peckham EJ, Hillenmeyer S, Hamm EA, Manivannan J, Peterson AL, Kreiling JA, Neretti N, Sedivy JM. Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements. Aging Cell. 12: 247-56. PMID 23360310 DOI: 10.1111/acel.12047  0.84
2012 Chamseddin KH, Khan SQ, Nguyen ML, Antosh M, Morris SN, Kolli S, Neretti N, Helfand SL, Bauer JH. takeout-dependent longevity is associated with altered Juvenile Hormone signaling. Mechanisms of Ageing and Development. 133: 637-46. PMID 22940452 DOI: 10.1016/j.mad.2012.08.004  0.84
2012 Reich A, Neretti N, Freiman RN, Wessel GM. Transcriptome variance in single oocytes within, and between, genotypes Molecular Reproduction and Development. 79: 502-503. PMID 22729953 DOI: 10.1002/mrd.22061  0.84
2011 Antosh M, Fox D, Helfand SL, Cooper LN, Neretti N. New comparative genomics approach reveals a conserved health span signature across species. Aging. 3: 576-83. PMID 21775776  0.84
2011 Yap CS, Peterson AL, Castellani G, Sedivy JM, Neretti N. Kinetic profiling of the c-Myc transcriptome and bioinformatic analysis of repressed gene promoters. Cell Cycle (Georgetown, Tex.). 10: 2184-96. PMID 21623162 DOI: 10.4161/cc.10.13.16249  0.84
2011 Antosh M, Whitaker R, Kroll A, Hosier S, Chang C, Bauer J, Cooper L, Neretti N, Helfand SL. Comparative transcriptional pathway bioinformatic analysis of dietary restriction, Sir2, p53 and resveratrol life span extension in Drosophila. Cell Cycle (Georgetown, Tex.). 10: 904-11. PMID 21325893 DOI: 10.4161/cc.10.6.14912  0.84
2010 Wood JG, Hillenmeyer S, Lawrence C, Chang C, Hosier S, Lightfoot W, Mukherjee E, Jiang N, Schorl C, Brodsky AS, Neretti N, Helfand SL. Chromatin remodeling in the aging genome of Drosophila. Aging Cell. 9: 971-8. PMID 20961390 DOI: 10.1111/j.1474-9726.2010.00624.x  0.84
2010 Bauer J, Antosh M, Chang C, Schorl C, Kolli S, Neretti N, Helfand SL. Comparative transcriptional profiling identifies takeout as a gene that regulates life span. Aging. 2: 298-310. PMID 20519778 DOI: v2/n5/full/100146.html  0.84
2010 Jimenez RH, Lee JS, Francesconi M, Castellani G, Neretti N, Sanders JA, Sedivy J, Gruppuso PA. Regulation of gene expression in hepatic cells by the mammalian Target of Rapamycin (mTOR). Plos One. 5: e9084. PMID 20140209 DOI: 10.1371/journal.pone.0009084  0.84
2009 Wang PY, Neretti N, Whitaker R, Hosier S, Chang C, Lu D, Rogina B, Helfand SL. Long-lived Indy and calorie restriction interact to extend life span. Proceedings of the National Academy of Sciences of the United States of America. 106: 9262-7. PMID 19470468 DOI: 10.1073/pnas.0904115106  0.84
2009 Neretti N, Wang PY, Brodsky AS, Nyguyen HH, White KP, Rogina B, Helfand SL. Long-lived Indy induces reduced mitochondrial reactive oxygen species production and oxidative damage. Proceedings of the National Academy of Sciences of the United States of America. 106: 2277-82. PMID 19164521 DOI: 10.1073/pnas.0812484106  0.84
2009 Helfand SL, Neretti N, Wang PY, Rogina B. Reply to Partridge et al.: Longevity of Drosophila Indy mutant is influenced by caloric intake and genetic background Proceedings of the National Academy of Sciences of the United States of America. 106: E54. DOI: 10.1073/pnas.0902947106  0.84
2008 Liu YC, Li F, Handler J, Huang CR, Xiang Y, Neretti N, Sedivy JM, Zeller KI, Dang CV. Global regulation of nucleotide biosynthetic genes by c-Myc. Plos One. 3: e2722. PMID 18628958 DOI: 10.1371/journal.pone.0002722  0.84
2008 Francesconi M, Remondini D, Neretti N, Sedivy JM, Cooper LN, Verondini E, Milanesi L, Castellani G. Reconstructing networks of pathways via significance analysis of their intersections. Bmc Bioinformatics. 9: S9. PMID 18460182 DOI: 10.1186/1471-2105-9-S4-S9  0.84
2008 Morrish F, Neretti N, Sedivy JM, Hockenbery DM. The oncogene c-Myc coordinates regulation of metabolic networks to enable rapid cell cycle entry. Cell Cycle (Georgetown, Tex.). 7: 1054-66. PMID 18414044  0.84
2008 Kim K, Neretti N, Intrator N. MAP fusion method for superresolution of images with locally varying pixel quality International Journal of Imaging Systems and Technology. 18: 242-250. DOI: 10.1002/ima.20137  0.84
2007 McKee AE, Neretti N, Carvalho LE, Meyer CA, Fox EA, Brodsky AS, Silver PA. Exon expression profiling reveals stimulus-mediated exon use in neural cells. Genome Biology. 8: R159. PMID 17683528 DOI: 10.1186/gb-2007-8-8-r159  0.84
2007 Neretti N, Remondini D, Tatar M, Sedivy JM, Pierini M, Mazzatti D, Powell J, Franceschi C, Castellani GC. Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. Bmc Bioinformatics. 8: S16. PMID 17430560 DOI: 10.1186/1471-2105-8-S1-S16  0.84
2007 Remondini D, Neretti N, Franceschi C, Tieri P, Sedivy JM, Milanesi L, Castellani GC. Networks from gene expression time series: Characterization of correlation patterns International Journal of Bifurcation and Chaos. 17: 2477-2483. DOI: 10.1142/S0218127407018543  0.84
2007 Lohmueller J, Neretti N, Hickey B, Kaka A, Gao A, Lemon J, Lattanzi V, Goldstein P, Tam LK, Schmidt M, Brodsky AS, Haberstroh K, Morgan J, Palmore T, Wessel G, et al. Progress toward construction and modelling of a tri-stable toggle switch in E. coli Iet Synthetic Biology. 1: 25-28. DOI: 10.1049/iet-stb:20070001  0.84
2006 Yu L, Neretti N, Intrator N. Multiple ping sonar accuracy improvement using robust motion estimation and ping fusion. The Journal of the Acoustical Society of America. 119: 2106-13. PMID 16642825 DOI: 10.1121/1.2169913  0.84
2006 Kim K, Neretti N, Intrator N. Video enhancement for underwater exploration using forward looking sonar Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4179: 554-563.  0.84
2005 Remondini D, O'Connell B, Intrator N, Sedivy JM, Neretti N, Castellani GC, Cooper LN. Targeting c-Myc-activated genes with a correlation method: detection of global changes in large gene expression network dynamics. Proceedings of the National Academy of Sciences of the United States of America. 102: 6902-6. PMID 15867157 DOI: 10.1073/pnas.0502081102  0.84
2005 Kim K, Neretti N, Intrator N. Non-iterative construction of super-resolution image from an acoustic camera video sequence Proceedings of the 2005 Ieee International Conference On Computational Intelligence For Homeland Security and Personal Safety, Cihsps 2005. 2005: 105-111. DOI: 10.1109/CIHSPS.2005.1500622  0.84
2005 Neretti N, Intrator N, Cooper LN. Improved noise tolerance for sonar applications in critical environments Proceedings of the 2005 Ieee International Conference On Computational Intelligence For Homeland Security and Personal Safety, Cihsps 2005. 2005: 94-97. DOI: 10.1109/CIHSPS.2005.1500619  0.84
2005 Kim K, Neretti N, Intrator N. Mosaicing of acoustic camera images Iee Proceedings: Radar, Sonar and Navigation. 152: 263-270. DOI: 10.1049/ip-rsn:20045015  0.84
2005 Yu L, Neretti N, Intrator N. Robust motion estimation improves underwater sonar accuracy Proceedings of the 2005 Ieee International Conference On Computational Intelligence For Homeland Security and Personal Safety, Cihsps 2005. 2005: 144-150.  0.84
2004 Simmons JA, Neretti N, Intrator N, Altes RA, Ferragamo MJ, Sanderson MI. Delay accuracy in bat sonar is related to the reciprocal of normalized echo bandwidth, or Q. Proceedings of the National Academy of Sciences of the United States of America. 101: 3638-43. PMID 14990794 DOI: 10.1073/pnas.0308279101  0.84
2004 Neretti N, Intrator N, Cooper LN. Adaptive pulse optimization for improved sonar range accuracy Ieee Signal Processing Letters. 11: 409-412. DOI: 10.1109/LSP.2004.824057  0.84
2004 Kim K, Neretti N, Intrator N. Acoustic camera image mosaicing and super-resolution Ocean '04 - Mts/Ieee Techno-Ocean '04: Bridges Across the Oceans - Conference Proceedings. 2: 653-658.  0.84
2004 Kim K, Intrator N, Neretti N. Image registration and mosaicing of acoustic camera images Proceedings of the Fourth Iasted International Conference On Visualization, Imaging, and Image Processing. 713-718.  0.84
2004 Intrator N, Neretti N, Huynh Q. Sonar object discrimination via spectral density analysis Ocean '04 - Mts/Ieee Techno-Ocean '04: Bridges Across the Oceans - Conference Proceedings. 2: 740-742.  0.84
2004 Kim K, Intrator N, Neretti N. Image registration and mosaicing of noisy acoustic camera images 11th Ieee International Conference On Electronics, Circuits and Systems, Icecs 2004. 527-530.  0.84
2004 Neretti N, Intrator N, Cooper LN. Pulse-train based time-delay estimation improves resiliency to noise Machine Learning For Signal Processing Xiv - Proceedings of the 2004 Ieee Signal Processing Society Workshop. 213-222.  0.84
2003 Sanderson MI, Neretti N, Intrator N, Simmons JA. Evaluation of an auditory model for echo delay accuracy in wideband biosonar. The Journal of the Acoustical Society of America. 114: 1648-59. PMID 14514218 DOI: 10.1121/1.1598195  0.84
2003 Neretti N, Sanderson MI, Intrator N, Simmons JA. Time-frequency model for echo-delay resolution in wideband biosonar. The Journal of the Acoustical Society of America. 113: 2137-45. PMID 12703724 DOI: 10.1121/1.1554693  0.84
2003 Simmons JA, Sanderson MI, Neretti N, Intrator N. Delay axis of impulse-response images in biosonar Oceans Conference Record (Ieee). 1: 310.  0.84
2003 Neretti N, Intrator N, Sanderson MI, Simmons JA, Cooper LN. Biosonar model for improved range accuracy in a noisy environment Oceans Conference Record (Ieee). 2: 604-610.  0.84
2003 Sanderson MI, Neretti N, Intrator N, Simmons J. A filterbank model for echo delay estimation in biosonar Oceans Conference Record (Ieee). 2: 619.  0.84
2002 Neretti N, Intrator N. An adaptive approach to wavelet filters design Neural Networks For Signal Processing - Proceedings of the Ieee Workshop. 2002: 317-326. DOI: 10.1109/NNSP.2002.1030043  0.84
1998 Huynh QQ, Neretti N, Intrator N, Dobeck GJ. Image enhancement for pattern recognition Proceedings of Spie - the International Society For Optical Engineering. 3392: 306-314. DOI: 10.1117/12.324202  0.84
Show low-probability matches.