Jeremiah J. Faith, Ph.D. - Publications

2008 Boston University, Boston, MA, United States 
Neural circuit formation, vocal learning in songbirds

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Britton GJ, Contijoch EJ, Spindler MP, Aggarwala V, Dogan B, Bongers G, San Mateo L, Baltus A, Das A, Gevers D, Borody TJ, Kaakoush NO, Kamm MA, Mitchell H, Paramsothy S, ... ... Faith JJ, et al. Defined microbiota transplant restores Th17/RORγt regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817490 DOI: 10.1073/Pnas.1922189117  0.33
2020 Leonardi I, Paramsothy S, Doron I, Semon A, Kaakoush NO, Clemente JC, Faith JJ, Borody TJ, Mitchell HM, Colombel JF, Kamm MA, Iliev ID. Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis. Cell Host & Microbe. PMID 32298656 DOI: 10.1016/J.Chom.2020.03.006  0.324
2019 Pizarro TT, Stappenbeck TS, Rieder F, Rosen MJ, Colombel JF, Donowitz M, Towne J, Mazmanian SK, Faith JJ, Hodin RA, Garrett WS, Fichera A, Poritz LS, Cortes CJ, Shtraizent N, et al. Challenges in IBD Research: Preclinical Human IBD Mechanisms. Inflammatory Bowel Diseases. 25: S5-S12. PMID 31095706 DOI: 10.1093/Ibd/Izz075  0.302
2019 Contijoch EJ, Britton GJ, Yang C, Mogno I, Li Z, Ng R, Llewellyn SR, Hira S, Johnson C, Rabinowitz KM, Barkan R, Dotan I, Hirten RP, Fu SC, Luo Y, ... ... Faith JJ, et al. Gut microbiota density influences host physiology and is shaped by host and microbial factors. Elife. 8. PMID 30666957 DOI: 10.7554/Elife.40553  0.33
2019 Britton GJ, Contijoch EJ, Mogno I, Vennaro OH, Llewellyn SR, Ng R, Li Z, Mortha A, Merad M, Das A, Gevers D, McGovern DPB, Singh N, Braun J, Jacobs JP, ... ... Faith JJ, et al. Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt Regulatory T Cells and Exacerbate Colitis in Mice. Immunity. 50: 212-224.e4. PMID 30650377 DOI: 10.1016/J.Immuni.2018.12.015  0.321
2018 Ho L, Zhao D, Ono K, Ruan K, Mogno I, Tsuji M, Carry E, Brathwaite J, Sims S, Frolinger T, Westfall S, Mazzola P, Wu Q, Hao K, Lloyd TE, ... ... Faith J, et al. Heterogeneity in gut microbiota drive polyphenol metabolism that influences α-synuclein misfolding and toxicity. The Journal of Nutritional Biochemistry. 64: 170-181. PMID 30530257 DOI: 10.1016/J.Jnutbio.2018.10.019  0.319
2018 Carry E, Zhao D, Mogno I, Faith J, Ho L, Villani T, Patel H, Pasinetti GM, Simon JE, Wu Q. Targeted analysis of microbial-generated phenolic acid metabolites derived from grape flavanols by gas chromatography-triple quadrupole mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis. 159: 374-383. PMID 30032004 DOI: 10.1016/J.Jpba.2018.06.034  0.314
2018 Pasinetti GM, Singh R, Westfall S, Herman F, Faith J, Ho L. The Role of the Gut Microbiota in the Metabolism of Polyphenols as Characterized by Gnotobiotic Mice. Journal of Alzheimer's Disease : Jad. PMID 29660942 DOI: 10.3233/Jad-171151  0.325
2018 Britton GJ, Contijoch EJ, Mogno I, Vennaro OH, Llewellyn SR, Ng R, Li Z, Mortha A, merad m, Das A, Gevers D, McGovern D, Singh N, Braun J, Jacobs JP, ... ... Faith J, et al. Mo1947 - Inflammatory Bowel Disease-Associated Gut Microbiotas Impact Homeostatic and Pathogenic Intestinal Immune Responses in Gnotobiotic Mice Gastroenterology. 154: S-860-S-861. DOI: 10.1016/S0016-5085(18)32911-1  0.315
2017 Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. Nature Biotechnology. PMID 29227468 DOI: 10.1038/Nbt.4037  0.312
2017 Llewellyn SR, Britton GJ, Contijoch EJ, Vennaro OH, Mortha A, Colombel JF, Grinspan A, Clemente JC, Merad M, Faith JJ. Interactions between diet and the intestinal microbiota alter intestinal permeability and colitis severity in mice. Gastroenterology. PMID 29174952 DOI: 10.1053/J.Gastro.2017.11.030  0.311
2017 Peters LA, Perrigoue J, Mortha A, Iuga A, Song WM, Neiman EM, Llewellyn SR, Di Narzo A, Kidd BA, Telesco SE, Zhao Y, Stojmirovic A, Sendecki J, Shameer K, Miotto R, ... ... Faith JJ, et al. A functional genomics predictive network model identifies regulators of inflammatory bowel disease. Nature Genetics. PMID 28892060 DOI: 10.1038/Ng.3947  0.373
2017 Pasinetti GM, Ho L, Cheng H, Wang J, Simon JE, Wu QL, Zhao D, Carry E, Ferruzzi MG, Faith J, Valcarcel B, Hao K. A comprehensive database and analysis framework to incorporate multiscale data types and enable integrated analysis of bioactive polyphenols. Molecular Pharmaceutics. PMID 28665131 DOI: 10.1021/Acs.Molpharmaceut.7B00412  0.366
2016 Chudnovskiy A, Mortha A, Kana V, Kennard A, Ramirez JD, Rahman A, Remark R, Mogno I, Ng R, Gnjatic S, Amir ED, Solovyov A, Greenbaum B, Clemente J, Faith J, et al. Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome. Cell. 167: 444-456.e14. PMID 27716507 DOI: 10.1016/J.Cell.2016.08.076  0.305
2015 Britton GJ, Faith JJ. Metabolic labeling puts the microbiome under the microscope. Nature Medicine. 21: 977-8. PMID 26340118 DOI: 10.1038/Nm.3941  0.336
2015 Faith JJ. Bridging the knowledge gap: from microbiome composition to function. Molecular Systems Biology. 11: 793. PMID 26148349 DOI: 10.15252/Msb.20156045  0.345
2015 Faith JJ. A key to gut health in a few microns of mucus Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aad4449  0.33
2015 Faith J. The persistent life of IgA Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aac9740  0.344
2014 Ahern PP, Faith JJ, Gordon JI. Mining the human gut microbiota for effector strains that shape the immune system. Immunity. 40: 815-23. PMID 24950201 DOI: 10.1016/J.Immuni.2014.05.012  0.334
2014 Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI. Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice. Science Translational Medicine. 6: 220ra11. PMID 24452263 DOI: 10.1126/Scitranslmed.3008051  0.363
2013 Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI. The long-term stability of the human gut microbiota. Science (New York, N.Y.). 341: 1237439. PMID 23828941 DOI: 10.1126/Science.1237439  0.303
2012 Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/Gr.138198.112  0.353
2011 McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Science Translational Medicine. 3: 106ra106. PMID 22030749 DOI: 10.1126/Scitranslmed.3002701  0.359
2011 Faith JJ, McNulty NP, Rey FE, Gordon JI. Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science (New York, N.Y.). 333: 101-4. PMID 21596954 DOI: 10.1126/Science.1206025  0.324
2011 Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice Proceedings of the National Academy of Sciences of the United States of America. 108: 6252-6257. PMID 21436049 DOI: 10.1073/Pnas.1102938108  0.331
2010 Rey FE, Faith JJ, Bain J, Muehlbauer MJ, Stevens RD, Newgard CB, Gordon JI. Dissecting the in vivo metabolic potential of two human gut acetogens. The Journal of Biological Chemistry. 285: 22082-90. PMID 20444704 DOI: 10.1074/Jbc.M110.117713  0.332
2010 Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proceedings of the National Academy of Sciences of the United States of America. 107: 7503-8. PMID 20363958 DOI: 10.1073/Pnas.1002355107  0.308
2009 Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Science Translational Medicine. 1: 6ra14. PMID 20368178 DOI: 10.1126/Scitranslmed.3000322  0.338
2008 Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, Gardner TS. Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Research. 36: D866-70. PMID 17932051 DOI: 10.1093/Nar/Gkm815  0.576
2007 Faith JJ, Olson AJ, Gardner TS, Sachidanandam R. Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context. Bmc Bioinformatics. 8: 344. PMID 17877794 DOI: 10.1186/1471-2105-8-344  0.605
2007 Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. Plos Biology. 5: e8. PMID 17214507 DOI: 10.1371/Journal.Pbio.0050008  0.701
2006 Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, Pollock DD. EGenBio: a data management system for evolutionary genomics and biodiversity. Bmc Bioinformatics. 7: S7. PMID 17118150 DOI: 10.1186/1471-2105-7-S2-S7  0.311
2005 Gardner TS, Faith JJ. Reverse-engineering transcription control networks. Physics of Life Reviews. 2: 65-88. PMID 20416858 DOI: 10.1016/J.Plrev.2005.01.001  0.574
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