Year |
Citation |
Score |
2020 |
Britton GJ, Contijoch EJ, Spindler MP, Aggarwala V, Dogan B, Bongers G, San Mateo L, Baltus A, Das A, Gevers D, Borody TJ, Kaakoush NO, Kamm MA, Mitchell H, Paramsothy S, ... ... Faith JJ, et al. Defined microbiota transplant restores Th17/RORγt regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817490 DOI: 10.1073/Pnas.1922189117 |
0.332 |
|
2020 |
Leonardi I, Paramsothy S, Doron I, Semon A, Kaakoush NO, Clemente JC, Faith JJ, Borody TJ, Mitchell HM, Colombel JF, Kamm MA, Iliev ID. Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis. Cell Host & Microbe. PMID 32298656 DOI: 10.1016/J.Chom.2020.03.006 |
0.326 |
|
2020 |
Yang C, Mogno I, Contijoch EJ, Borgerding JN, Aggarwala V, Li Z, Siu S, Grasset EK, Helmus DS, Dubinsky MC, Mehandru S, Cerutti A, Faith JJ. Fecal IgA Levels Are Determined by Strain-Level Differences in Bacteroides ovatus and Are Modifiable by Gut Microbiota Manipulation. Cell Host & Microbe. PMID 32075742 DOI: 10.1016/J.Chom.2020.01.016 |
0.301 |
|
2019 |
Pizarro TT, Stappenbeck TS, Rieder F, Rosen MJ, Colombel JF, Donowitz M, Towne J, Mazmanian SK, Faith JJ, Hodin RA, Garrett WS, Fichera A, Poritz LS, Cortes CJ, Shtraizent N, et al. Challenges in IBD Research: Preclinical Human IBD Mechanisms. Inflammatory Bowel Diseases. 25: S5-S12. PMID 31095706 DOI: 10.1093/Ibd/Izz075 |
0.302 |
|
2019 |
Contijoch EJ, Britton GJ, Yang C, Mogno I, Li Z, Ng R, Llewellyn SR, Hira S, Johnson C, Rabinowitz KM, Barkan R, Dotan I, Hirten RP, Fu SC, Luo Y, ... ... Faith JJ, et al. Gut microbiota density influences host physiology and is shaped by host and microbial factors. Elife. 8. PMID 30666957 DOI: 10.7554/Elife.40553 |
0.332 |
|
2019 |
Britton GJ, Contijoch EJ, Mogno I, Vennaro OH, Llewellyn SR, Ng R, Li Z, Mortha A, Merad M, Das A, Gevers D, McGovern DPB, Singh N, Braun J, Jacobs JP, ... ... Faith JJ, et al. Microbiotas from Humans with Inflammatory Bowel Disease Alter the Balance of Gut Th17 and RORγt Regulatory T Cells and Exacerbate Colitis in Mice. Immunity. 50: 212-224.e4. PMID 30650377 DOI: 10.1016/J.Immuni.2018.12.015 |
0.323 |
|
2018 |
Ho L, Zhao D, Ono K, Ruan K, Mogno I, Tsuji M, Carry E, Brathwaite J, Sims S, Frolinger T, Westfall S, Mazzola P, Wu Q, Hao K, Lloyd TE, ... ... Faith J, et al. Heterogeneity in gut microbiota drive polyphenol metabolism that influences α-synuclein misfolding and toxicity. The Journal of Nutritional Biochemistry. 64: 170-181. PMID 30530257 DOI: 10.1016/J.Jnutbio.2018.10.019 |
0.32 |
|
2018 |
Carry E, Zhao D, Mogno I, Faith J, Ho L, Villani T, Patel H, Pasinetti GM, Simon JE, Wu Q. Targeted analysis of microbial-generated phenolic acid metabolites derived from grape flavanols by gas chromatography-triple quadrupole mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis. 159: 374-383. PMID 30032004 DOI: 10.1016/J.Jpba.2018.06.034 |
0.314 |
|
2018 |
Pasinetti GM, Singh R, Westfall S, Herman F, Faith J, Ho L. The Role of the Gut Microbiota in the Metabolism of Polyphenols as Characterized by Gnotobiotic Mice. Journal of Alzheimer's Disease : Jad. PMID 29660942 DOI: 10.3233/Jad-171151 |
0.326 |
|
2018 |
Britton GJ, Contijoch EJ, Mogno I, Vennaro OH, Llewellyn SR, Ng R, Li Z, Mortha A, merad m, Das A, Gevers D, McGovern D, Singh N, Braun J, Jacobs JP, ... ... Faith J, et al. Mo1947 - Inflammatory Bowel Disease-Associated Gut Microbiotas Impact Homeostatic and Pathogenic Intestinal Immune Responses in Gnotobiotic Mice Gastroenterology. 154: S-860-S-861. DOI: 10.1016/S0016-5085(18)32911-1 |
0.318 |
|
2017 |
Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. Nature Biotechnology. PMID 29227468 DOI: 10.1038/Nbt.4037 |
0.312 |
|
2017 |
Llewellyn SR, Britton GJ, Contijoch EJ, Vennaro OH, Mortha A, Colombel JF, Grinspan A, Clemente JC, Merad M, Faith JJ. Interactions between diet and the intestinal microbiota alter intestinal permeability and colitis severity in mice. Gastroenterology. PMID 29174952 DOI: 10.1053/J.Gastro.2017.11.030 |
0.313 |
|
2017 |
Peters LA, Perrigoue J, Mortha A, Iuga A, Song WM, Neiman EM, Llewellyn SR, Di Narzo A, Kidd BA, Telesco SE, Zhao Y, Stojmirovic A, Sendecki J, Shameer K, Miotto R, ... ... Faith JJ, et al. A functional genomics predictive network model identifies regulators of inflammatory bowel disease. Nature Genetics. PMID 28892060 DOI: 10.1038/Ng.3947 |
0.373 |
|
2017 |
Pasinetti GM, Ho L, Cheng H, Wang J, Simon JE, Wu QL, Zhao D, Carry E, Ferruzzi MG, Faith J, Valcarcel B, Hao K. A comprehensive database and analysis framework to incorporate multiscale data types and enable integrated analysis of bioactive polyphenols. Molecular Pharmaceutics. PMID 28665131 DOI: 10.1021/Acs.Molpharmaceut.7B00412 |
0.363 |
|
2016 |
Chudnovskiy A, Mortha A, Kana V, Kennard A, Ramirez JD, Rahman A, Remark R, Mogno I, Ng R, Gnjatic S, Amir ED, Solovyov A, Greenbaum B, Clemente J, Faith J, et al. Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome. Cell. 167: 444-456.e14. PMID 27716507 DOI: 10.1016/J.Cell.2016.08.076 |
0.307 |
|
2015 |
Britton GJ, Faith JJ. Metabolic labeling puts the microbiome under the microscope. Nature Medicine. 21: 977-8. PMID 26340118 DOI: 10.1038/Nm.3941 |
0.336 |
|
2015 |
Faith JJ. Bridging the knowledge gap: from microbiome composition to function. Molecular Systems Biology. 11: 793. PMID 26148349 DOI: 10.15252/Msb.20156045 |
0.345 |
|
2015 |
Faith JJ, Colombel JF, Gordon JI. Identifying strains that contribute to complex diseases through the study of microbial inheritance. Proceedings of the National Academy of Sciences of the United States of America. 112: 633-40. PMID 25576328 DOI: 10.1073/Pnas.1418781112 |
0.3 |
|
2015 |
Faith JJ. A key to gut health in a few microns of mucus Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aad4449 |
0.331 |
|
2015 |
Faith J. The persistent life of IgA Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aac9740 |
0.345 |
|
2014 |
Ahern PP, Faith JJ, Gordon JI. Mining the human gut microbiota for effector strains that shape the immune system. Immunity. 40: 815-23. PMID 24950201 DOI: 10.1016/J.Immuni.2014.05.012 |
0.335 |
|
2014 |
Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI. Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice. Science Translational Medicine. 6: 220ra11. PMID 24452263 DOI: 10.1126/Scitranslmed.3008051 |
0.364 |
|
2013 |
Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI. The long-term stability of the human gut microbiota. Science (New York, N.Y.). 341: 1237439. PMID 23828941 DOI: 10.1126/Science.1237439 |
0.304 |
|
2012 |
Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/Gr.138198.112 |
0.354 |
|
2011 |
McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Science Translational Medicine. 3: 106ra106. PMID 22030749 DOI: 10.1126/Scitranslmed.3002701 |
0.36 |
|
2011 |
Faith JJ, McNulty NP, Rey FE, Gordon JI. Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science (New York, N.Y.). 333: 101-4. PMID 21596954 DOI: 10.1126/Science.1206025 |
0.325 |
|
2011 |
Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice Proceedings of the National Academy of Sciences of the United States of America. 108: 6252-6257. PMID 21436049 DOI: 10.1073/Pnas.1102938108 |
0.332 |
|
2010 |
Rey FE, Faith JJ, Bain J, Muehlbauer MJ, Stevens RD, Newgard CB, Gordon JI. Dissecting the in vivo metabolic potential of two human gut acetogens. The Journal of Biological Chemistry. 285: 22082-90. PMID 20444704 DOI: 10.1074/Jbc.M110.117713 |
0.333 |
|
2010 |
Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proceedings of the National Academy of Sciences of the United States of America. 107: 7503-8. PMID 20363958 DOI: 10.1073/Pnas.1002355107 |
0.308 |
|
2009 |
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Science Translational Medicine. 1: 6ra14. PMID 20368178 DOI: 10.1126/Scitranslmed.3000322 |
0.339 |
|
2008 |
Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, Gardner TS. Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Research. 36: D866-70. PMID 17932051 DOI: 10.1093/Nar/Gkm815 |
0.581 |
|
2007 |
Faith JJ, Olson AJ, Gardner TS, Sachidanandam R. Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context. Bmc Bioinformatics. 8: 344. PMID 17877794 DOI: 10.1186/1471-2105-8-344 |
0.603 |
|
2007 |
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. Plos Biology. 5: e8. PMID 17214507 DOI: 10.1371/Journal.Pbio.0050008 |
0.698 |
|
2006 |
Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, Pollock DD. EGenBio: a data management system for evolutionary genomics and biodiversity. Bmc Bioinformatics. 7: S7. PMID 17118150 DOI: 10.1186/1471-2105-7-S2-S7 |
0.31 |
|
2005 |
Gardner TS, Faith JJ. Reverse-engineering transcription control networks. Physics of Life Reviews. 2: 65-88. PMID 20416858 DOI: 10.1016/J.Plrev.2005.01.001 |
0.572 |
|
Low-probability matches (unlikely to be authored by this person) |
2018 |
Fan T, Goeser-Sampson L, Faith J, Hansen JJ. 750 - Carbohydrate Metabolic Pathways in Resident Intestinal Bacteria are Upregulated During Chronic Colitis and Exacerbate Intestinal Inflammation Gastroenterology. 154: S-157-S-158. DOI: 10.1016/S0016-5085(18)30940-5 |
0.297 |
|
2010 |
Faith JJ, Rey FE, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, Gordon JI. Creating and characterizing communities of human gut microbes in gnotobiotic mice Isme Journal. 4: 1094-1098. PMID 20664551 DOI: 10.1038/Ismej.2010.110 |
0.288 |
|
2016 |
Peters L, Perrigoue J, Mortha A, Stojmirovic A, Neiman EM, Iuga A, Song W, Kidd BA, Losic B, Llewellyn S, Miotto R, Shameer K, Zhao Y, Di Narzo A, Shah H, ... ... Faith J, et al. Su1858 Integrative Networks Identify Novel Regulators of Susceptibility and Pathogenesis of Inflammatory Bowel Disease Gastroenterology. 150: S571-S572. DOI: 10.1016/S0016-5085(16)31957-6 |
0.286 |
|
2018 |
Contijoch EJ, Britton GJ, Yang C, Mogno I, Li Z, Ng R, Llewellyn SR, Hira S, Johnson C, Rabinowitz KM, Barkan R, Dotan I, Hirten RP, Fu S, Luo Y, ... ... Faith JJ, et al. Author response: Gut microbiota density influences host physiology and is shaped by host and microbial factors Elife. DOI: 10.7554/Elife.40553.033 |
0.283 |
|
2020 |
Grasset EK, Chorny A, Casas-Recasens S, Gutzeit C, Bongers G, Thomsen I, Chen L, He Z, Matthews DB, Oropallo MA, Veeramreddy P, Uzzan M, Mortha A, Carrillo J, Reis BS, ... ... Faith J, et al. Gut T cell-independent IgA responses to commensal bacteria require engagement of the TACI receptor on B cells. Science Immunology. 5. PMID 32737068 DOI: 10.1126/Sciimmunol.Aat7117 |
0.279 |
|
2013 |
Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science (New York, N.Y.). 341: 1241214. PMID 24009397 DOI: 10.1126/Science.1241214 |
0.277 |
|
2015 |
Zhang D, Chen G, Manwani D, Mortha A, Xu C, Faith JJ, Burk RD, Kunisaki Y, Jang JE, Scheiermann C, Merad M, Frenette PS. Neutrophil ageing is regulated by the microbiome. Nature. PMID 26374999 DOI: 10.1038/Nature15367 |
0.277 |
|
2019 |
Saffouri GB, Shields-Cutler RR, Chen J, Yang Y, Lekatz HR, Hale VL, Cho JM, Battaglioli EJ, Bhattarai Y, Thompson KJ, Kalari KK, Behera G, Berry JC, Peters SA, Patel R, ... ... Faith JJ, et al. Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders. Nature Communications. 10: 2012. PMID 31043597 DOI: 10.1038/S41467-019-09964-7 |
0.277 |
|
2019 |
Liu B, Oka A, Jang J, Holt L, Britton GJ, Faith J, Sartor RB. 377 – Protective and Potentially Aggressive Bacterial Species Occur Simultaneously in Healthy Hosts Gastroenterology. 156. DOI: 10.1016/S0016-5085(19)36982-3 |
0.277 |
|
2019 |
Frolinger T, Sims S, Smith C, Wang J, Cheng H, Faith J, Ho L, Hao K, Pasinetti GM. The gut microbiota composition affects dietary polyphenols-mediated cognitive resilience in mice by modulating the bioavailability of phenolic acids. Scientific Reports. 9: 3546. PMID 30837576 DOI: 10.1038/S41598-019-39994-6 |
0.276 |
|
2013 |
Hansen JJ, Fan T, Faith JJ, Sartor RB. 261 Chronic Immune-Mediated Colitis Is Associated With a Significantly Altered Luminal Microbial Metatranscriptome Gastroenterology. 144: S-58. DOI: 10.1016/S0016-5085(13)60207-3 |
0.276 |
|
2019 |
Hirten RP, Grinspan A, Fu SC, Luo Y, Suarez-Farinas M, Rowland J, Contijoch EJ, Mogno I, Yang N, Luong T, Labrias PR, Peter I, Cho JH, Sands BE, Colombel JF, ... Faith JJ, et al. Microbial Engraftment and Efficacy of Fecal Microbiota Transplant for Clostridium Difficile in Patients With and Without Inflammatory Bowel Disease. Inflammatory Bowel Diseases. PMID 30852592 DOI: 10.1093/Ibd/Izy398 |
0.275 |
|
2018 |
Paramsothy S, Nielsen S, Kamm MA, Deshpande NP, Faith JJ, Clemente JC, Paramsothy R, Walsh AJ, van den Bogaerde J, Samuel D, Leong RWL, Connor S, Ng W, Lin E, Borody TJ, et al. Specific Bacteria and Metabolites Associated with Response to Fecal Microbiota Transplantation in Patients with Ulcerative Colitis. Gastroenterology. PMID 30529583 DOI: 10.1053/J.Gastro.2018.12.001 |
0.274 |
|
2018 |
Seki A, Torres J, Tarassishin L, Hu J, Eisele C, Nair N, Britton GJ, Mao Q, Clemente JC, Faith J, Colombel JF, Peter I, Mehandru S. Tu1822 - The Gut Microbiota of Pregnant Women with Crohn's Disease and their Babies is Associated with Abnormalities in the Adaptive Immune System - Results from the Meconium Study Gastroenterology. 154: S-1029. DOI: 10.1016/S0016-5085(18)33448-6 |
0.273 |
|
2018 |
Torres J, Seki A, Tarassishin L, Hu J, Eisele C, Nair N, Britton GJ, Mao Q, Mogno I, Clemente JC, Faith J, Colombel J-, Mehandru S, Peter I. DOP087 The gut microbiota of pregnant women with Crohn’s disease and their babies is associated with abnormalities in the adaptive immune system: results from the MECONIUM study Journal of Crohn's and Colitis. 12: S087-S088. DOI: 10.1093/Ecco-Jcc/Jjx180.124 |
0.271 |
|
2009 |
Giannakis M, Bäckhed HK, Chen SL, Faith JJ, Wu M, Guruge JL, Engstrand L, Gordon JI. Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis. The Journal of Biological Chemistry. 284: 30383-94. PMID 19723631 DOI: 10.1074/Jbc.M109.052738 |
0.269 |
|
2018 |
Chen L, He Z, Iuga AC, Martins Filho SN, Faith JJ, Clemente JC, Deshpande M, Jayaprakash A, Colombel JF, Lafaille JJ, Sachidanandam R, Furtado GC, Lira SA. Diet Modifies Colonic Microbiota and CD4 T Cell Repertoire to Induce Flares of Colitis in Mice With Myeloid-cell Expression of Interleukin 23. Gastroenterology. PMID 29909020 DOI: 10.1053/J.Gastro.2018.06.034 |
0.267 |
|
2018 |
Zhao D, Yuan B, Carry E, Pasinetti GM, Ho L, Faith J, Mogno I, Simon J, Wu Q. Development and validation of an ultra-high performance liquid chromatography/triple quadrupole mass spectrometry method for analyzing microbial-derived grape polyphenol metabolites. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1099: 34-45. PMID 30241072 DOI: 10.1016/J.Jchromb.2018.09.014 |
0.267 |
|
2018 |
Paramsothy S, Kamm MA, Nielsen S, Deshpande N, Faith J, Clemente JC, Paramsothy R, Walsh A, Bogaerde Jvd, Samuel D, Leong RW, Connor SJ, Ng WSW, Lin E, Wilkins M, et al. 130 - In Fecal Microbiota Transplantation (FMT) for Ulcerative Colitis, Fusobacterium is Associated with Lack of Remission, while Metabolic Shifts to Starch Degradation and Short Chain Fatty Acid Production are Associated with Remission – Results from the Randomized Controlled Focus Study Gastroenterology. 154. DOI: 10.1016/S0016-5085(18)30588-2 |
0.267 |
|
2017 |
Rabinowitz KM, Cohen-Kedar S, Chait K, Contijoch EJ, Pasmanik-Chor M, Faith J, Shen-Orr S, Dotan I. Dual Oxidase (DUOX) 2 is Increased in Intestinal Inflammation and Mediates Changes in Mucus Composition in Patients with Inflammatory Bowel Diseases (IBD) Gastroenterology. 152: S964. DOI: 10.1016/S0016-5085(17)33271-7 |
0.267 |
|
2015 |
Ruane D, Chorny A, Lee H, Faith J, Pandey G, Shan M, Simchoni N, Rahman A, Garg A, Weinstein EG, Oropallo M, Gaylord M, Ungaro R, Cunningham-Rundles C, Alexandropoulos K, et al. Microbiota regulate the ability of lung dendritic cells to induce IgA class-switch recombination and generate protective gastrointestinal immune responses. The Journal of Experimental Medicine. PMID 26712806 DOI: 10.1084/Jem.20150567 |
0.266 |
|
2013 |
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods. 10: 57-9. PMID 23202435 DOI: 10.1038/Nmeth.2276 |
0.264 |
|
2018 |
Paramsothy S, Kamm M, Nielsen S, Deshpande N, Faith J, Clemente J, Paramsothy R, Walsh A, van den Bogaerde J, Samuel D, Leong R, Connor S, Ng W, Lin E, Wilkins M, et al. OP019 In faecal microbiota transplantation (FMT) for ulcerative colitis, fusobacterium is associated with lack of remission, while metabolic shifts to starch degradation and short-chain fatty acid production are associated with remission (FOCUS study) Journal of Crohn's and Colitis. 12: S013-S014. DOI: 10.1093/Ecco-Jcc/Jjx180.018 |
0.262 |
|
2019 |
Torres J, Hu J, Seki A, Eisele C, Nair N, Huang R, Tarassishin L, Jharap B, Cote-Daigneault J, Mao Q, Mogno I, Britton GJ, Uzzan M, Chen CL, Kornbluth A, ... ... Faith JJ, et al. Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice. Gut. PMID 31036757 DOI: 10.1136/Gutjnl-2018-317855 |
0.261 |
|
2005 |
Raina SZ, Faith JJ, Disotell TR, Seligmann H, Stewart CB, Pollock DD. Evolution of base-substitution gradients in primate mitochondrial genomes. Genome Research. 15: 665-73. PMID 15867428 DOI: 10.1101/Gr.3128605 |
0.259 |
|
2015 |
Zhang D, Chen G, Manwani D, Mortha A, Xu C, Faith JJ, Burk RD, Kunisaki Y, Jang J, Scheiermann C, Merad M, Frenette PS. Targeting Neutrophil Aging and the Microbiota for the Treatment of Sickle Cell Disease Blood. 126: 279-279. DOI: 10.1182/Blood.V126.23.279.279 |
0.259 |
|
2015 |
Wang D, Ho L, Faith J, Ono K, Janle EM, Lachcik PJ, Cooper BR, Jannasch AH, D'Arcy BR, Williams BA, Ferruzzi MG, Levine S, Zhao W, Dubner L, Pasinetti GM. Role of intestinal microbiota in the generation of polyphenol-derived phenolic acid mediated attenuation of Alzheimer's disease β-amyloid oligomerization. Molecular Nutrition & Food Research. 59: 1025-40. PMID 25689033 DOI: 10.1002/Mnfr.201400544 |
0.258 |
|
2003 |
Phillips MS, Lawrence R, Sachidanandam R, Morris AP, Balding DJ, Donaldson MA, Studebaker JF, Ankener WM, Alfisi SV, Kuo FS, Camisa AL, Pazorov V, Scott KE, Carey BJ, Faith J, et al. Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nature Genetics. 33: 382-7. PMID 12590262 DOI: 10.1038/Ng1100 |
0.257 |
|
2018 |
Shah SC, Faith J, Colombel JF. Microbial-host interactions in inflammatory bowel disease, functional bowel disease, obesity and obesity-related metabolic disease. Gastroenterology. PMID 30176219 DOI: 10.1053/J.Gastro.2018.06.081 |
0.254 |
|
2016 |
Ho L, Faith J, Ono K, Pasinetti GM. O2-02-04: Protective Roles of Intestinal Microbiota in Alzheimer’s Disease Through Mechanisms Involving Short Chain Fatty Acids and Phenolic Acids Alzheimer's & Dementia. 12: P224-P225. DOI: 10.1016/J.Jalz.2016.06.402 |
0.249 |
|
2019 |
Chen L, Strohmeier V, He Z, Deshpande M, Catalan-Dibene J, Durum SK, Moran TM, Kraus T, Xiong H, Faith JJ, Sodhi CP, Hackam DJ, Lira SA, Furtado GC. Interleukin 22 disrupts pancreatic function in newborn mice expressing IL-23. Nature Communications. 10: 4517. PMID 31586069 DOI: 10.1038/S41467-019-12540-8 |
0.243 |
|
2016 |
Ungaro RC, Mehandru S, Pandey G, Clemente J, Faith J, Lee H, Sandhuria P, Marion J, Cho JH, Sands B. A Pilot Study on the Effects of Smoking Cessation on Intestinal Gene Expression and the Microbiome American Journal of Gastroenterology. 111: S326-S327. DOI: 10.14309/00000434-201610001-00725 |
0.241 |
|
2021 |
Britton GJ, Faith JJ. Causative Microbes in Host-Microbiome Interactions. Annual Review of Microbiology. PMID 34348027 DOI: 10.1146/annurev-micro-041321-042402 |
0.235 |
|
2015 |
Ho L, Faith J, Pasinetti GM. P4-155: Intestinal microbiota-derived phenol acids are capable of accumulating in the brain and interfere with β-amyloid oligomerization Alzheimer's & Dementia. 11: P838-P838. DOI: 10.1016/J.Jalz.2015.06.1862 |
0.228 |
|
2023 |
Plitt T, Faith JJ. Seminars in immunology special issue: Nutrition, microbiota and immunity The unexplored microbes in health and disease. Seminars in Immunology. 66: 101735. PMID 36857892 DOI: 10.1016/j.smim.2023.101735 |
0.225 |
|
2007 |
Faith J. Targeted projection pursuit for interactive exploration of high- dimensional data sets Proceedings of the International Conference On Information Visualisation. 286-292. DOI: 10.1109/IV.2007.107 |
0.215 |
|
2021 |
Fan TJ, Goeser L, Lu K, Faith JJ, Hansen JJ. Enterococcus faecalis Glucosamine Metabolism Exacerbates Experimental Colitis. Cellular and Molecular Gastroenterology and Hepatology. PMID 34246809 DOI: 10.1016/j.jcmgh.2021.06.017 |
0.204 |
|
2006 |
Faith J, Mintram R, Angelova M. Targeted projection pursuit for visualizing gene expression data classifications Bioinformatics. 22: 2667-2673. PMID 16954139 DOI: 10.1093/bioinformatics/btl463 |
0.2 |
|
2022 |
Sanchez-Russo L, Rajasekaran A, Bin S, Faith J, Cravedi P. The Gut and Kidney Crosstalk in Immunoglobulin A Nephropathy. Kidney360. 3: 1630-1639. PMID 36245664 DOI: 10.34067/KID.0002382022 |
0.193 |
|
2022 |
Spindler MP, Siu SS, Mogno I, Li Z, Yang C, Mehandru S, Britton GJ, Faith JJ. Human gut microbiota stimulate defined innate immune responses that vary from phylum to strain. Cell Host & Microbe. PMID 36099923 DOI: 10.1016/j.chom.2022.08.009 |
0.191 |
|
2008 |
Angelova M, Myers C, Faith J. Classification of genes based on gene expression analysis Physics of Atomic Nuclei. 71: 780-787. DOI: 10.1134/S1063778808050025 |
0.19 |
|
2022 |
Bianchimano P, Britton GJ, Wallach DS, Smith EM, Cox LM, Liu S, Iwanowski K, Weiner HL, Faith JJ, Clemente JC, Tankou SK. Mining the microbiota to identify gut commensals modulating neuroinflammation in a mouse model of multiple sclerosis. Microbiome. 10: 174. PMID 36253847 DOI: 10.1186/s40168-022-01364-2 |
0.188 |
|
2023 |
Spindler MP, Mogno I, Suri P, Britton GJ, Faith JJ. Species-specific CD4 T cells enable prediction of mucosal immune phenotypes from microbiota composition. Proceedings of the National Academy of Sciences of the United States of America. 120: e2215914120. PMID 36917674 DOI: 10.1073/pnas.2215914120 |
0.187 |
|
2023 |
Thompson KN, Bonham KS, Ilott NE, Britton GJ, Colmenero P, Bullers SJ, McIver LJ, Ma S, Nguyen LH, Filer A, Brough I, Pearson C, Moussa C, Kumar V, Lam LH, ... ... Faith JJ, et al. Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes. Science Translational Medicine. 15: eabn4722. PMID 37494472 DOI: 10.1126/scitranslmed.abn4722 |
0.182 |
|
2022 |
Dsouza M, Menon R, Crossette E, Bhattarai SK, Schneider J, Kim YG, Reddy S, Caballero S, Felix C, Cornacchione L, Hendrickson J, Watson AR, Minot SS, Greenfield N, Schopf L, ... ... Faith J, et al. Colonization of the live biotherapeutic product VE303 and modulation of the microbiota and metabolites in healthy volunteers. Cell Host & Microbe. 30: 583-598.e8. PMID 35421353 DOI: 10.1016/j.chom.2022.03.016 |
0.174 |
|
2022 |
Centa M, Weinstein EG, Clemente JC, Faith JJ, Fiel MI, Lyallpuri R, Herbin O, Alexandropoulos K. Impaired central tolerance induces changes in the gut microbiota that exacerbate autoimmune hepatitis. Journal of Autoimmunity. 128: 102808. PMID 35276587 DOI: 10.1016/j.jaut.2022.102808 |
0.17 |
|
2013 |
Vickers P, Faith J, Rossiter N. Understanding visualization: A formal approach using category theory and semiotics Ieee Transactions On Visualization and Computer Graphics. 19: 1048-1061. DOI: 10.1109/TVCG.2012.294 |
0.168 |
|
2021 |
He Z, Chen L, Catalan-Dibene J, Bongers G, Faith JJ, Suebsuwong C, DeVita RJ, Shen Z, Fox JG, Lafaille JJ, Furtado GC, Lira SA. Food colorants metabolized by commensal bacteria promote colitis in mice with dysregulated expression of interleukin-23. Cell Metabolism. PMID 33989521 DOI: 10.1016/j.cmet.2021.04.015 |
0.158 |
|
2023 |
Canales-Herrerias P, Uzzan M, Seki A, Czepielewski RS, Verstockt B, Livanos A, Raso F, Dunn A, Dai D, Wang A, Al-Taie Z, Martin J, Ko HM, Tokuyama M, Tankelevich M, ... ... Faith J, et al. Gut-associated lymphoid tissue attrition associates with response to anti-α4β7 therapy in ulcerative colitis. Biorxiv : the Preprint Server For Biology. PMID 36711839 DOI: 10.1101/2023.01.19.524731 |
0.155 |
|
2020 |
Livanos AE, Jha D, Cossarini F, Gonzalez-Reiche AS, Tokuyama M, Aydillo T, Parigi TL, Ramos I, Dunleavy K, Lee B, Dixon R, Chen ST, Martinez-Delgado G, Nagula S, Ko HM, ... ... Faith JJ, et al. Gastrointestinal involvement attenuates COVID-19 severity and mortality. Medrxiv : the Preprint Server For Health Sciences. PMID 32935117 DOI: 10.1101/2020.09.07.20187666 |
0.153 |
|
2022 |
Yang C, Chen-Liaw A, Spindler MP, Tortorella D, Moran TM, Cerutti A, Faith JJ. Immunoglobulin A antibody composition is sculpted to bind the self gut microbiome. Science Immunology. 7: eabg3208. PMID 35857580 DOI: 10.1126/sciimmunol.abg3208 |
0.153 |
|
2023 |
Agrawal M, Allin KH, Mehandru S, Faith J, Jess T, Colombel JF. The appendix and ulcerative colitis - an unsolved connection. Nature Reviews. Gastroenterology & Hepatology. PMID 37081213 DOI: 10.1038/s41575-023-00774-3 |
0.151 |
|
2021 |
Aggarwala V, Mogno I, Li Z, Yang C, Britton GJ, Chen-Liaw A, Mitcham J, Bongers G, Gevers D, Clemente JC, Colombel JF, Grinspan A, Faith J. Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes. Nature Microbiology. 6: 1309-1318. PMID 34580445 DOI: 10.1038/s41564-021-00966-0 |
0.149 |
|
2020 |
Britton GJ, Chen-Liaw A, Cossarini F, Livanos AE, Spindler MP, Plitt T, Eggers J, Mogno I, Gonzalez-Reiche A, Siu S, Tankelevich M, Grinspan L, Dixon RE, Jha D, Martinez-Delgado G, ... ... Faith JJ, et al. SARS-CoV-2-specific IgA and limited inflammatory cytokines are present in the stool of select patients with acute COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 32909002 DOI: 10.1101/2020.09.03.20183947 |
0.145 |
|
2011 |
Haddow C, Perry J, Durrant M, Faith J. Predicting functional residues of protein sequence alignments as a feature selection task. International Journal of Data Mining and Bioinformatics. 5: 691-705. PMID 22295751 DOI: 10.1504/IJDMB.2011.045417 |
0.137 |
|
2021 |
Britton GJ, Chen-Liaw A, Cossarini F, Livanos AE, Spindler MP, Plitt T, Eggers J, Mogno I, Gonzalez-Reiche AS, Siu S, Tankelevich M, Grinspan LT, Dixon RE, Jha D, van de Guchte A, ... ... Faith JJ, et al. Limited intestinal inflammation despite diarrhea, fecal viral RNA and SARS-CoV-2-specific IgA in patients with acute COVID-19. Scientific Reports. 11: 13308. PMID 34172783 DOI: 10.1038/s41598-021-92740-9 |
0.13 |
|
2023 |
Faye AS, Allin KH, Iversen AT, Agrawal M, Faith J, Colombel JF, Jess T. Antibiotic use as a risk factor for inflammatory bowel disease across the ages: a population-based cohort study. Gut. PMID 36623926 DOI: 10.1136/gutjnl-2022-327845 |
0.116 |
|
2021 |
Carter JK, Bhattacharya D, Borgerding JN, Fiel MI, Faith JJ, Friedman SL. Modeling dysbiosis of human NASH in mice: Loss of gut microbiome diversity and overgrowth of Erysipelotrichales. Plos One. 16: e0244763. PMID 33395434 DOI: 10.1371/journal.pone.0244763 |
0.115 |
|
2008 |
Engert JC, Lemire M, Faith J, Brisson D, Fujiwara TM, Roslin NM, Brewer CG, Montpetit A, Darmond-Zwaig C, Renaud Y, Doré C, Bailey SD, Verner A, Tremblay G, St-Pierre J, et al. Identification of a chromosome 8p locus for early-onset coronary heart disease in a French Canadian population. European Journal of Human Genetics : Ejhg. 16: 105-14. PMID 17805225 DOI: 10.1038/Sj.Ejhg.5201920 |
0.114 |
|
2023 |
Canales-Herrerias P, Garcia-Carmona Y, Shang J, Meringer H, Yee DS, Radigan L, Buta S, Martinez-Delgado G, Tankelevich M, Helmus DS, Dubinksy M, Everts-van der Wind A, Dervieux T, Bogunovic D, Colombel JF, ... ... Faith J, et al. Selective IgA2 deficiency in a patient with small intestinal Crohn's disease. The Journal of Clinical Investigation. PMID 37129981 DOI: 10.1172/JCI167742 |
0.114 |
|
2003 |
Faith JJ, Pollock DD. Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. Genetics. 165: 735-45. PMID 14573484 |
0.112 |
|
2022 |
Aggarwala V, Mogno I, Li Z, Yang C, Britton GJ, Chen-Liaw A, Mitcham J, Bongers G, Gevers D, Clemente JC, Colombel JF, Grinspan A, Faith J. Author Correction: Precise quantification of bacterial strains after fecal microbiota transplantation delineates long-term engraftment and explains outcomes. Nature Microbiology. PMID 35388189 DOI: 10.1038/s41564-022-01118-8 |
0.102 |
|
2001 |
Rioux JD, Daly MJ, Silverberg MS, Lindblad K, Steinhart H, Cohen Z, Delmonte T, Kocher K, Miller K, Guschwan S, Kulbokas EJ, O'Leary S, Winchester E, Dewar K, Green T, ... ... Faith J, et al. Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease. Nature Genetics. 29: 223-8. PMID 11586304 DOI: 10.1038/Ng1001-223 |
0.1 |
|
2015 |
Faith J, Thorburn S, Tippens KM. Examining the association between patient- centered communication and provider avoidance, CAM use, and CAM-use disclosure Alternative Therapies in Health and Medicine. 21: 30-35. PMID 25830278 |
0.097 |
|
2010 |
Dastani Z, Pajukanta P, Marcil M, Rudzicz N, Ruel I, Bailey SD, Lee JC, Lemire M, Faith J, Platko J, Rioux J, Hudson TJ, Gaudet D, Engert JC, Genest J. Fine mapping and association studies of a high-density lipoprotein cholesterol linkage region on chromosome 16 in French-Canadian subjects. European Journal of Human Genetics : Ejhg. 18: 342-7. PMID 19844255 DOI: 10.1038/Ejhg.2009.157 |
0.094 |
|
2010 |
Faith J, Rajbhandari S. The use of linear projections in the visual analysis of signals in an indoor optical wireless link 2010 7th International Symposium On Communication Systems, Networks and Digital Signal Processing, Csndsp 2010. 576-581. |
0.089 |
|
2021 |
Livanos AE, Jha D, Cossarini F, Gonzalez-Reiche AS, Tokuyama M, Aydillo T, Parigi TL, Ladinsky MS, Ramos I, Dunleavy K, Lee B, Dixon R, Chen ST, Martinez-Delgado G, Nagula S, ... ... Faith JJ, et al. Intestinal host response to SARS-CoV-2 infection and COVID-19 outcomes in patients with gastrointestinal symptoms. Gastroenterology. PMID 33676971 DOI: 10.1053/j.gastro.2021.02.056 |
0.088 |
|
2013 |
Rajbhandari S, Faith J, Ghassemlooy Z, Angelova M. Comparative study of classifiers to mitigate intersymbol interference in diffuse indoor optical wireless communication links Optik. 124: 4192-4196. DOI: 10.1016/j.ijleo.2012.12.040 |
0.088 |
|
2021 |
Gold SL, Faith J, Ungaro R. Food for Thought: Consumption of a High-Fat Diet in Combination With Antibiotics Results in Early Inflammatory Changes in the Gastrointestinal Tract. Gastroenterology. 162: 341-343. PMID 34536455 DOI: 10.1053/j.gastro.2021.09.026 |
0.087 |
|
2013 |
Gibson H, Faith J, Vickers P. A survey of two-dimensional graph layout techniques for information visualisation Information Visualization. 12: 324-357. DOI: 10.1177/1473871612455749 |
0.085 |
|
2010 |
Faith J, Panzarella C, Spencer RC, Williams C, Brewer J, Covone M. Use of performance-based contracting to improve effective use of resources for publicly funded residential services. The Journal of Behavioral Health Services & Research. 37: 400-8. PMID 18654859 DOI: 10.1007/s11414-008-9135-1 |
0.085 |
|
2013 |
Thorburn S, Faith J, Keon KL, Tippens KM. Discrimination in health care and CAM use in a representative sample of U.S. adults Journal of Alternative and Complementary Medicine. 19: 577-581. PMID 23308362 DOI: 10.1089/Acm.2012.0586 |
0.082 |
|
2016 |
Faith J, Thorburn S, Sinky TH. Exploring healthcare experiences among online interactive weight loss forum users Computers in Human Behavior. 57: 326-333. DOI: 10.1016/J.Chb.2015.12.048 |
0.08 |
|
2011 |
Gibson H, Faith J. Node-attribute graph layout for small-world networks Proceedings of the International Conference On Information Visualisation. 482-487. DOI: 10.1109/IV.2011.64 |
0.078 |
|
2013 |
Faith J, Thorburn S, Tippens KM. Examining CAM use disclosure using the Behavioral Model of Health Services Use Complementary Therapies in Medicine. 21: 501-508. PMID 24050587 DOI: 10.1016/J.Ctim.2013.08.002 |
0.076 |
|
2023 |
Haskey N, Gold SL, Faith JJ, Raman M. To Fiber or Not to Fiber: The Swinging Pendulum of Fiber Supplementation in Patients with Inflammatory Bowel Disease. Nutrients. 15. PMID 36904081 DOI: 10.3390/nu15051080 |
0.072 |
|
2002 |
Raby BA, Klimecki WT, Laprise C, Renaud Y, Faith J, Lemire M, Greenwood C, Weiland KM, Lange C, Palmer LJ, Lazarus R, Vercelli D, Kwiatkowski DJ, Silverman EK, Martinez FD, et al. Polymorphisms in toll-like receptor 4 are not associated with asthma or atopy-related phenotypes. American Journal of Respiratory and Critical Care Medicine. 166: 1449-56. PMID 12406828 DOI: 10.1164/Rccm.200207-634Oc |
0.07 |
|
2023 |
Louie T, Golan Y, Khanna S, Bobilev D, Erpelding N, Fratazzi C, Carini M, Menon R, Ruisi M, Norman JM, Faith JJ, Olle B, Li M, Silber JL, Pardi DS. VE303, a Defined Bacterial Consortium, for Prevention of Recurrent Clostridioides difficile Infection: A Randomized Clinical Trial. Jama. PMID 37060545 DOI: 10.1001/jama.2023.4314 |
0.07 |
|
2016 |
Faith J, Thorburn S, Smit E. Body mass index and the use of the Internet for health information Health Education Journal. 75: 94-104. DOI: 10.1177/0017896914568435 |
0.067 |
|
2015 |
Faith JJ. Bridging the knowledge gap: from microbiome composition to function. Molecular Systems Biology. 11: 793. PMID 25762152 |
0.066 |
|
2003 |
Bird J, Faith J, Webster A. Tabula Rasa: A case study in evolutionary curation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2611: 479-489. |
0.065 |
|
2002 |
Engert JC, Vohl MC, Williams SM, Lepage P, Loredo-Osti JC, Faith J, Doré C, Renaud Y, Burtt NP, Villeneuve A, Hirschhorn JN, Altshuler D, Groop LC, Després JP, Gaudet D, et al. 5' flanking variants of resistin are associated with obesity. Diabetes. 51: 1629-34. PMID 11978666 DOI: 10.2337/Diabetes.51.5.1629 |
0.064 |
|
2021 |
LaMarche NM, Faith JJ. Maternal infection programmes offspring immunity. Nature Reviews. Immunology. PMID 33707761 DOI: 10.1038/s41577-021-00532-z |
0.064 |
|
2015 |
Blazquez AB, Faith JJ, Sampson HA, Berin C. Microbial Regulation of IgE Production in Early Life Journal of Allergy and Clinical Immunology. 135: AB67. DOI: 10.1016/j.jaci.2014.12.1152 |
0.061 |
|
2007 |
Duncan HJ, Pittman S, Govil A, Sorn L, Bissler G, Schultz T, Faith J, Kant S, Roy-Chaudhury P. Alternative medicine use in dialysis patients: potential for good and bad! Nephron. Clinical Practice. 105: c108-13. PMID 17179733 DOI: 10.1159/000097986 |
0.057 |
|
2006 |
Bailey SD, Loredo-Osti JC, Lepage P, Faith J, Fontaine J, Desbiens KM, Hudson TJ, Bouchard C, Gaudet D, Pérusse L, Vohl MC, Engert JC. Common polymorphisms in the promoter of the visfatin gene (PBEF1) influence plasma insulin levels in a French-Canadian population Diabetes. 55: 2896-2902. PMID 17003359 DOI: 10.2337/Db06-0189 |
0.053 |
|
2012 |
Evans A, Okeke B, Ali S, Achara-Abrahams I, OHara T, Stevenson T, Warner N, Bolton C, Lim S, Faith J, King J, Davidson L, Poplawski P, Rothbard A, Salzer M. Converting partial hospitals to community integrated recovery centers. Community Mental Health Journal. 48: 557-63. PMID 22015957 DOI: 10.1007/S10597-011-9449-Y |
0.053 |
|
1977 |
Faith J. Using hand-held infrared imaging devices, either airborne or surface Proceedings of Spie - the International Society For Optical Engineering. 108: 150-151. DOI: 10.1117/12.955497 |
0.046 |
|
1997 |
Faith J, Kuo SP, Huang J. Frequency downshifting and trapping of an electromagnetic wave by a rapidly created spatially periodic plasma Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 55: 1843-1851. |
0.031 |
|
2021 |
Spindler MP, Faith JJ, Wang J, Kenny PJ. Gut clues to weight gain after quitting smoking. Nature. 600: 611-612. PMID 34880480 DOI: 10.1038/d41586-021-03548-6 |
0.025 |
|
1997 |
Kuo SP, Faith J. Interaction of an electromagnetic wave with a rapidly created spatially periodic plasma Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 56: 2143-2150. |
0.021 |
|
1997 |
Faith J, Kuo S, Huang J. Electron precipitation caused by chaotic motion in the magnetosphere due to large-amplitude whistler waves Journal of Geophysical Research a: Space Physics. 102: 2233-2241. |
0.02 |
|
2006 |
Jackson K, Bartruff B, Mosher P, Faith J. Planning an itinerary for a successful site visit Good Clinical Practice Journal. 13: 26-27. |
0.01 |
|
1997 |
Faith J. Precipitation of magnetospheric electrons caused by relativistic effect-enhanced chaotic motion in the whistler wave fields Journal of Geophysical Research a: Space Physics. 102: 9631-9638. |
0.01 |
|
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