Charless C. Fowlkes, Ph.D. - Publications

Affiliations: 
2005 University of California, Berkeley, Berkeley, CA 
 2007- University of California, Irvine, Irvine, CA 
Area:
vision
Website:
http://www.ics.uci.edu/~fowlkes

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Cinquin A, Chiang M, Paz A, Hallman S, Yuan O, Vysniauskaite I, Fowlkes CC, Cinquin O. Intermittent Stem Cell Cycling Balances Self-Renewal and Senescence of the C. elegans Germ Line. Plos Genetics. 12: e1005985. PMID 27077385 DOI: 10.1371/journal.pgen.1005985  1
2016 Tcheng DK, Nayak AK, Fowlkes CC, Punyasena SW. Visual Recognition Software for Binary Classification and Its Application to Spruce Pollen Identification. Plos One. 11: e0148879. PMID 26867017 DOI: 10.1371/journal.pone.0148879  1
2015 Chiang M, Hallman S, Cinquin A, de Mochel NR, Paz A, Kawauchi S, Calof AL, Cho KW, Fowlkes CC, Cinquin O. Analysis of in vivo single cell behavior by high throughput, human-in-the-loop segmentation of three-dimensional images. Bmc Bioinformatics. 16: 397. PMID 26607933 DOI: 10.1186/s12859-015-0814-7  1
2015 McCusker CD, Athippozhy A, Diaz-Castillo C, Fowlkes C, Gardiner DM, Voss SR. Positional plasticity in regenerating Amybstoma mexicanum limbs is associated with cell proliferation and pathways of cellular differentiation. Bmc Developmental Biology. 15: 45. PMID 26597593 DOI: 10.1186/s12861-015-0095-4  1
2015 Treweek JB, Chan KY, Flytzanis NC, Yang B, Deverman BE, Greenbaum A, Lignell A, Xiao C, Cai L, Ladinsky MS, Bjorkman PJ, Fowlkes CC, Gradinaru V. Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping. Nature Protocols. 10: 1860-96. PMID 26492141 DOI: 10.1038/nprot.2015.122  1
2015 Staller MV, Fowlkes CC, Bragdon MD, Wunderlich Z, Estrada J, DePace AH. A gene expression atlas of a bicoid-depleted Drosophila embryo reveals early canalization of cell fate. Development (Cambridge, England). 142: 587-96. PMID 25605785 DOI: 10.1242/dev.117796  1
2015 Hallman S, Fowlkes CC. Oriented edge forests for boundary detection Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 7: 1732-1740. DOI: 10.1109/CVPR.2015.7298782  1
2015 Zhu X, Vondrick C, Fowlkes CC, Ramanan D. Do We Need More Training Data? International Journal of Computer Vision. DOI: 10.1007/s11263-015-0812-2  1
2015 Yarkony J, Fowlkes CC. Planar ultrametrics for image segmentation Advances in Neural Information Processing Systems. 2015: 64-72.  1
2015 Yarkony J, Zhang C, Fowlkes CC. Hierarchical planar correlation clustering for cell segmentation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8932: 492-504.  1
2014 Chen A, Lee E, Tu R, Santiago K, Grosberg A, Fowlkes C, Khine M. Integrated platform for functional monitoring of biomimetic heart sheets derived from human pluripotent stem cells. Biomaterials. 35: 675-83. PMID 24144905 DOI: 10.1016/j.biomaterials.2013.10.007  1
2014 Keator DB, Fallon JH, Lakatos A, Fowlkes CC, Potkin SG, Ihler A. Feed-forward hierarchical model of the ventral visual stream applied to functional brain image classification. Human Brain Mapping. 35: 38-52. PMID 22847891 DOI: 10.1002/hbm.22149  1
2014 Ghiasi G, Yang Y, Ramanan D, Fowlkes CC. Parsing occluded people Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2401-2408. DOI: 10.1109/CVPR.2014.308  1
2014 Ghiasi G, Fowlkes CC. Occlusion coherence: Localizing occluded faces with a hierarchical deformable part model Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1899-1906. DOI: 10.1109/CVPR.2014.306  1
2013 Mander L, Li M, Mio W, Fowlkes CC, Punyasena SW. Classification of grass pollen through the quantitative analysis of surface ornamentation and texture. Proceedings. Biological Sciences / the Royal Society. 280: 20131905. PMID 24048158 DOI: 10.1098/rspb.2013.1905  1
2013 Bae H, Fowlkes CC, Chou PH. Accurate motion deblurring using camera motion tracking and scene depth Proceedings of Ieee Workshop On Applications of Computer Vision. 148-153. DOI: 10.1109/WACV.2013.6475012  1
2013 Diaz R, Hallman S, Fowlkes CC. Detecting dynamic objects with multi-view background subtraction Proceedings of the Ieee International Conference On Computer Vision. 273-280. DOI: 10.1109/ICCV.2013.41  1
2013 Andres B, Yarkony J, Manjunath BS, Kirchhoff S, Turetken E, Fowlkes CC, Pfister H. Segmenting planar superpixel adjacency graphs w.r.t. non-planar superpixel affinity graphs Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8081: 266-279. DOI: 10.1007/978-3-642-40395-8_20  1
2013 Bae H, Fowlkes CC, Chou PH. Patch mosaic for fast motion deblurring Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7726: 322-335. DOI: 10.1007/978-3-642-37431-9_25  1
2012 Kim HJ, Park JW, Byun JH, Poon WW, Cotman CW, Fowlkes CC, Jeon NL. Quantitative analysis of axonal transport by using compartmentalized and surface micropatterned culture of neurons. Acs Chemical Neuroscience. 3: 433-8. PMID 24358503 DOI: 10.1021/cn3000026  1
2012 Yang Y, Hallman S, Ramanan D, Fowlkes CC. Layered object models for image segmentation. Ieee Transactions On Pattern Analysis and Machine Intelligence. 34: 1731-43. PMID 22813957 DOI: 10.1109/TPAMI.2011.208  1
2012 Zhu X, Vondrick C, Ramanan D, Fowlkes CC. Do we need more training data or better models for object detection? Bmvc 2012 - Electronic Proceedings of the British Machine Vision Conference 2012. DOI: 10.5244/C.26.80  1
2012 Yarkony J, Ihler A, Fowlkes CC. Fast planar correlation clustering for image segmentation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7577: 568-581. DOI: 10.1007/978-3-642-33783-3_41  1
2012 Bebis G, Boyle R, Parvin B, Koracin D, Fowlkes C, Wang S, Choi MH, Mantler S, Schulze J, Acevedo D, Mueller K, Papka M. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7431: V-VI. DOI: 10.1007/978-3-642-33179-4  1
2011 Hengenius JB, Gribskov M, Rundell AE, Fowlkes CC, Umulis DM. Analysis of gap gene regulation in a 3D organism-scale model of the Drosophila melanogaster embryo. Plos One. 6: e26797. PMID 22110594 DOI: 10.1371/journal.pone.0026797  1
2011 Chen A, Lieu DK, Freschauf L, Lew V, Sharma H, Wang J, Nguyen D, Karakikes I, Hajjar RJ, Gopinathan A, Botvinick E, Fowlkes CC, Li RA, Khine M. Shrink-film configurable multiscale wrinkles for functional alignment of human embryonic stem cells and their cardiac derivatives. Advanced Materials (Deerfield Beach, Fla.). 23: 5785-91. PMID 22065428 DOI: 10.1002/adma.201103463  1
2011 Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH. A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila. Plos Genetics. 7: e1002346. PMID 22046143 DOI: 10.1371/journal.pgen.1002346  1
2011 Luna JI, Ciriza J, Garcia-Ojeda ME, Kong M, Herren A, Lieu DK, Li RA, Fowlkes CC, Khine M, McCloskey KE. Multiscale biomimetic topography for the alignment of neonatal and embryonic stem cell-derived heart cells. Tissue Engineering. Part C, Methods. 17: 579-88. PMID 21235325 DOI: 10.1089/ten.TEC.2010.0410  1
2011 Arbeláez P, Maire M, Fowlkes C, Malik J. Contour detection and hierarchical image segmentation. Ieee Transactions On Pattern Analysis and Machine Intelligence. 33: 898-916. PMID 20733228 DOI: 10.1109/TPAMI.2010.161  1
2011 Chen Y, Gelfand A, Fowlkes CC, Welling M. Integrating local classifiers through nonlinear dynamics on label graphs with an application to image segmentation Proceedings of the Ieee International Conference On Computer Vision. 2635-2642. DOI: 10.1109/ICCV.2011.6126553  1
2011 Bo Y, Fowlkes CC. Shape-based pedestrian parsing Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2265-2272. DOI: 10.1109/CVPR.2011.5995609  1
2011 Pirsiavash H, Ramanan D, Fowlkes CC. Globally-optimal greedy algorithms for tracking a variable number of objects Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1201-1208. DOI: 10.1109/CVPR.2011.5995604  1
2011 Desai C, Ramanan D, Fowlkes CC. Discriminative models for multi-class object layout International Journal of Computer Vision. 95: 1-12. DOI: 10.1007/s11263-011-0439-x  1
2011 Yarkony J, Ihler AT, Fowlkes CC. Planar cycle covering graphs Proceedings of the 27th Conference On Uncertainty in Artificial Intelligence, Uai 2011. 761-769.  1
2011 Yarkony J, Morshed R, Ihler AT, Fowlkes CC. Tightening MRF relaxations with planar subproblems Proceedings of the 27th Conference On Uncertainty in Artificial Intelligence, Uai 2011. 770-777.  1
2010 Rübel O, Ahern S, Bethel EW, Biggin MD, Childs H, Cormier-Michel E, Depace A, Eisen MB, Fowlkes CC, Geddes CG, Hagen H, Hamann B, Huang MY, Keränen SV, Knowles DW, et al. Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data. Procedia Computer Science. 1: 1757-1764. PMID 23762211 DOI: 10.1016/j.procs.2010.04.197  1
2010 Aswani A, Keränen SVE, Brown J, Fowlkes CC, Knowles DW, Biggin MD, Bickel P, Tomlin CJ. Nonparametric identification of regulatory interactions from spatial and temporal gene expression data Bmc Bioinformatics. 11. PMID 20684787 DOI: 10.1186/1471-2105-11-413  1
2010 Burge J, Fowlkes CC, Banks MS. Natural-scene statistics predict how the figure-ground cue of convexity affects human depth perception. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 7269-80. PMID 20505093 DOI: 10.1523/JNEUROSCI.5551-09.2010  1
2010 Rübel O, Weber GH, Huang MY, Bethel EW, Biggin MD, Fowlkes CC, Luengo Hendriks CL, Keränen SV, Eisen MB, Knowles DW, Malik J, Hagen H, Hamann B. Integrating data clustering and visualization for the analysis of 3D gene expression data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 64-79. PMID 20150669 DOI: 10.1109/TCBB.2008.49  1
2010 Desai C, Ramanan D, Fowlkes C. Discriminative models for static human-object interactions 2010 Ieee Computer Society Conference On Computer Vision and Pattern Recognition - Workshops, Cvprw 2010. 9-16. DOI: 10.1109/CVPRW.2010.5543176  1
2010 Yarkony J, Fowlkes C, Ihler A. Covering trees and lower-bounds on quadratic assignment Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 887-894. DOI: 10.1109/CVPR.2010.5540122  1
2010 Yang Y, Hallman S, Ramanan D, Fowlkes C. Layered object detection for multi-class segmentation Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 3113-3120. DOI: 10.1109/CVPR.2010.5540070  1
2010 Park D, Ramanan D, Fowlkes C. Multiresolution models for object detection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6314: 241-254. DOI: 10.1007/978-3-642-15561-1_18  1
2009 Weber GH, Rübel O, Huang MY, DePace AH, Fowlkes CC, Keränen SV, Luengo Hendriks CL, Hagen H, Knowles DW, Malik J, Biggin MD, Hamann B. Visual exploration of three-dimensional gene expression using physical views and linked abstract views. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 296-309. PMID 19407353 DOI: 10.1109/TCBB.2007.70249  1
2009 Arbelaez P, Maire M, Fowlkes C, Malik J. From Contours to Regions: An Empirical Evaluation 2009 Ieee Computer Society Conference On Computer Vision and Pattern Recognition Workshops, Cvpr Workshops 2009. 2294-2301. DOI: 10.1109/CVPR.2009.5206707  1
2009 Pirsiavash H, Ramanan D, Fowlkes C. Bilinear classifiers for visual recognition Advances in Neural Information Processing Systems 22 - Proceedings of the 2009 Conference. 1482-1490.  1
2008 Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, et al. A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm. Cell. 133: 364-74. PMID 18423206 DOI: 10.1016/j.cell.2008.01.053  1
2008 Maire M, Arbeláez P, Fowlkes C, Malik J. Using contours to detect and localize junctions in natural images 26th Ieee Conference On Computer Vision and Pattern Recognition, Cvpr. DOI: 10.1109/CVPR.2008.4587420  1
2008 Ren X, Fowlkes CC, Malik J. Learning probabilistic models for contour completion in natural images International Journal of Computer Vision. 77: 47-63. DOI: 10.1007/s11263-007-0092-6  1
2008 Rübel O, Weber GH, Huang MY, Bethel EW, Keränen SVE, Fowlkes CC, Hendriks CLL, DePace AH, Simirenko L, Eisen MB, Biggin MD, Hagen H, Malik J, Knowles DW, Hamann B. PointCloudXplore 2: Visual exploration of 3D gene expression Lecture Notes in Informatics (Lni), Proceedings - Series of the Gesellschaft Fur Informatik (Gi). 125-137.  1
2007 Fowlkes CC, Martin DR, Malik J. Local figure-ground cues are valid for natural images. Journal of Vision. 7: 2. PMID 17685809 DOI: 10.1167/7.8.2  1
2006 Keränen SV, Fowlkes CC, Luengo Hendriks CL, Sudar D, Knowles DW, Malik J, Biggin MD. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics. Genome Biology. 7: R124. PMID 17184547 DOI: 10.1186/gb-2006-7-12-r124  1
2006 Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline. Genome Biology. 7: R123. PMID 17184546 DOI: 10.1186/gb-2006-7-12-r123  1
2006 Ren X, Fowlkes CC, Malik J. Figure/ground assignment in natural images Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3952: 614-627. DOI: 10.1007/11744047_47  1
2005 Ren X, Fowlkes CC, Malik J. Scale-invariant contour completion using conditional random fields Proceedings of the Ieee International Conference On Computer Vision. 1214-1221. DOI: 10.1109/ICCV.2005.213  1
2005 Fowlkes CC, Luengo Hendriks CL, Keränen SVE, Biggin MD, Knowles DW, Sudar D, Malik J. Registering Drosophila embryos at cellular resolution to build a quantitative 3D atlas of Gene expression patterns and morphology 2005 Ieee Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 354-357. DOI: 10.1109/CSBW.2005.118  1
2005 Ren X, Fowlkes CC, Malik J. Cue integration for figure/ground labeling Advances in Neural Information Processing Systems. 1121-1128.  1
2004 Martin DR, Fowlkes CC, Malik J. Learning to detect natural image boundaries using local brightness, color, and texture cues. Ieee Transactions On Pattern Analysis and Machine Intelligence. 26: 530-49. PMID 15460277 DOI: 10.1109/TPAMI.2004.1273918  1
2004 Fowlkes C, Belongie S, Chung F, Malik J. Spectral grouping using the Nyström method. Ieee Transactions On Pattern Analysis and Machine Intelligence. 26: 214-25. PMID 15376896 DOI: 10.1109/TPAMI.2004.1262185  1
2003 Fowlkes CC, Martin DR, Malik J. Ecological statistics of grouping by similarity Journal of Vision. 3: 43a. DOI: 10.1167/3.9.43  1
2003 Martin DR, Fowlkes CC, Malik J. Learning to optimally detect image boundaries using brightness, color and texture Journal of Vision. 3: 113a. DOI: 10.1167/3.9.113  1
2003 Fowlkes C, Martin D, Malik J. Learning affinity functions for image segmentation: Combining patch-based and gradient-based approaches Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: II/54-II/61.  1
2003 Martin DR, Fowlkes CC, Malik J. Learning to detect natural image boundaries using brightness and texture Advances in Neural Information Processing Systems 1
2002 Belongie S, Fowlkes C, Chung F, Malik J. Spectral partitioning with indefinite kernels using the nyström extension Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2352: 531-542.  1
2001 Fowlkes C, Belongie S, Malik J. Efficient spatiotemporal grouping using the Nyström method Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: I231-I238.  1
2001 Martin D, Fowlkes C, Tal D, Malik J. A database of human segmented natural images and its application to evaluating segmentation algorithms and measuring ecological statistics Proceedings of the Ieee International Conference On Computer Vision. 2: 416-423.  1
1999 Roden J, Burl M, Fowlkes C. Diamond eye image mining system Proceedings of the International Conference On Scientific and Statistical Database Management, Ssdbm. 283.  1
1999 Burl MC, Fowlkes C, Roden J, Stechert A, Mukhtar S. Diamond Eye: A distributed architecture for image data mining Proceedings of Spie - the International Society For Optical Engineering. 3695: 197-206.  1
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