Jonathan M. Skarie, Ph.D. - Related publications

2008 Medical College of Wisconsin, Milwaukee, WI, United States 
retinal development
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Zhao Y, Huang Z, Huang J, Zhang C, Meng F. Phylogenetic analysis and expression differences of eye-related genes in cavefish genus Sinocyclocheilus. Integrative Zoology. PMID 32652757 DOI: 10.1111/1749-4877.12466   
2020 Ma X, Su B, Tian Y, Backenstose NJC, Ye Z, Moss A, Duong TY, Wang X, Dunham RA. Deep Transcriptomic Analysis Reveals the Dynamic Developmental Progression during Early Development of Channel Catfish (). International Journal of Molecular Sciences. 21. PMID 32748829 DOI: 10.3390/ijms21155535   
2020 Vaid S, Huttner WB. Transcriptional Regulators and Human-Specific/Primate-Specific Genes in Neocortical Neurogenesis. International Journal of Molecular Sciences. 21. PMID 32610533 DOI: 10.3390/ijms21134614   
2020 Li X, Lei Y, Yu Y, Zhang Y, Zhang W, Shen H, Tao C, Wu F, Huang S, Shao H. Discovery and characterization of a novel splice variant of the p53 tumor suppressor gene in a human T cell leukemia cellline. International Journal of Clinical and Experimental Pathology. 13: 1121-1135. PMID 32509087   
2020 Gažová I, Lefevre L, Bush SJ, Clohisey S, Arner E, de Hoon M, Severin J, van Duin L, Andersson R, Lengeling A, Hume DA, Summers KM. The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1. Frontiers in Cell and Developmental Biology. 8: 498. PMID 32719792 DOI: 10.3389/fcell.2020.00498   
2020 Sam J, Mercer EJ, Torregroza I, Banks KM, Evans T. Specificity, redundancy and dosage thresholds among genes during zebrafish cardiogenesis. Biology Open. 9. PMID 32580940 DOI: 10.1242/bio.053611   
2020 Debarba JA, Sehabiague MPC, Monteiro KM, Gerber AL, Vasconcelos ATR, Ferreira HB, Zaha A. Transcriptomic Analysis of the Early Strobilar Development of . Pathogens (Basel, Switzerland). 9. PMID 32545493 DOI: 10.3390/pathogens9060465   
2020 Orman-Ligeza B, Borrill P, Chia T, Chirico M, Doležel J, Drea S, Karafiátová M, Schatlowski N, Solomon CU, Steuernagel B, Wulff BBH, Uauy C, Trafford K. encodes a prolamin-box-binding transcription factor that controls embryo growth in barley and wheat. Journal of Cereal Science. 93: 102965. PMID 32508376 DOI: 10.1016/j.jcs.2020.102965   
2020 Ray TA, Cochran K, Kozlowski C, Wang J, Alexander G, Cady MA, Spencer WJ, Ruzycki PA, Clark BS, Laeremans A, He MX, Wang X, Park E, Hao Y, Iannaccone A, et al. Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease. Nature Communications. 11: 3328. PMID 32620864 DOI: 10.1038/s41467-020-17009-7   
2020 Sangeeta K, Yenugu S. siRNA-mediated knockdown of sperm-associated antigen 11a (Spag11a) mRNA in epididymal primary epithelial cells affects proliferation: a transcriptome analyses. Cell and Tissue Research. 379: 601-612. PMID 31691005 DOI: 10.1007/s00441-019-03107-6   
2020 Radens CM, Blake D, Jewell P, Barash Y, Lynch KW. Meta-Analysis of Transcriptomic Variation in T cell Populations Reveals both Variable and Consistent Signatures of Gene Expression and Splicing. Rna (New York, N.Y.). PMID 32554554 DOI: 10.1261/rna.075929.120   
2020 Puttabyatappa M, Guo X, Dou J, Dumesic D, Bakulski KM, Padmanabhan V. Developmental Programming: Sheep Granulosa and Theca Cell-Specific Transcriptional Regulation by Prenatal Testosterone. Endocrinology. PMID 32516392 DOI: 10.1210/endocr/bqaa094   
2020 Wu H, Gontarek BC, Yi G, Beall BD, Neelakandan AK, Adhikari B, Chen R, McCarty DR, Severin A, Becraft PW. The thick aleurone1 gene encodes a NOT1 subunit of the CCR4-NOT complex and regulates cell patterning in endosperm. Plant Physiology. PMID 32737073 DOI: 10.1104/pp.20.00703   
2020 Wood KA, Rowlands CF, Thomas HB, Woods S, O'Flaherty J, Douzgou S, Kimber SJ, Newman WG, O'Keefe RT. Modelling the developmental spliceosomal craniofacial disorder Burn-McKeown syndrome using induced pluripotent stem cells. Plos One. 15: e0233582. PMID 32735620 DOI: 10.1371/journal.pone.0233582   
2020 Zhang C, Zhong JF, Zhang X. Revealing the molecular mechanism of central nervous system leukemia with single-cell technology. Critical Reviews in Oncology/Hematology. 153: 103046. PMID 32650214 DOI: 10.1016/j.critrevonc.2020.103046   
2020 Tang X, Ding X, Hou YL. Comparative analysis of transcriptomes revealed the molecular mechanism of development of at different stages of fruiting bodies. Food Science and Biotechnology. 29: 939-951. PMID 32582456 DOI: 10.1007/s10068-020-00732-8   
2020 Yilmaz A, Braverman-Gross C, Bialer-Tsypin A, Peretz M, Benvenisty N. Mapping Gene Circuits Essential for Germ Layer Differentiation via Loss-of-Function Screens in Haploid Human Embryonic Stem Cells. Cell Stem Cell. PMID 32735778 DOI: 10.1016/j.stem.2020.06.023   
2020 Grubert F, Srivas R, Spacek DV, Kasowski M, Ruiz-Velasco M, Sinnott-Armstrong N, Greenside P, Narasimha A, Liu Q, Geller B, Sanghi A, Kulik M, Sa S, Rabinovitch M, Kundaje A, et al. Landscape of cohesin-mediated chromatin loops in the human genome. Nature. 583: 737-743. PMID 32728247 DOI: 10.1038/s41586-020-2151-x   
2020 Li CY, Cai JH, Tsai JJP, Wang CCN. Identification of Hub Genes Associated With Development of Head and Neck Squamous Cell Carcinoma by Integrated Bioinformatics Analysis. Frontiers in Oncology. 10: 681. PMID 32528874 DOI: 10.3389/fonc.2020.00681   
2020 Otten ABC, Kamps R, Lindsey P, Gerards M, Pendeville-Samain H, Muller M, van Tienen FHJ, Smeets HJM. Knockdown Results in Reduction of mtDNA Copy Number, OXPHOS Deficiency and Abnormalities in Zebrafish Embryos. Frontiers in Cell and Developmental Biology. 8: 381. PMID 32596237 DOI: 10.3389/fcell.2020.00381   
2020 Neupane S, Aryal YP, Kim TY, Yeon CY, An CH, Kim JY, Yamamoto H, Lee Y, Sohn WJ, Kim JY. Signaling Modulations of miR-206-3p in Tooth Morphogenesis. International Journal of Molecular Sciences. 21. PMID 32722078 DOI: 10.3390/ijms21155251   
2020 Goolam M, Xypolita ME, Costello I, Lydon JP, DeMayo FJ, Bikoff EK, Robertson EJ, Mould AW. The transcriptional repressor Blimp1/PRDM1 regulates the maternal decidual response in mice. Nature Communications. 11: 2782. PMID 32493987 DOI: 10.1038/s41467-020-16603-z   
2020 Oudelaar AM, Beagrie RA, Gosden M, de Ornellas S, Georgiades E, Kerry J, Hidalgo D, Carrelha J, Shivalingam A, El-Sagheer AH, Telenius JM, Brown T, Buckle VJ, Socolovsky M, Higgs DR, et al. Dynamics of the 4D genome during in vivo lineage specification and differentiation. Nature Communications. 11: 2722. PMID 32483172 DOI: 10.1038/s41467-020-16598-7   
2020 Shi Y, Li M, Yu Y, Zhou Y, Zhang W, Hua H, Wang S. Stress response in periodontal ligament stem cells may contribute to bisphosphonate‑associated osteonecrosis of the jaw: A gene expression array analysis. Molecular Medicine Reports. 22: 2043-2051. PMID 32705175 DOI: 10.3892/mmr.2020.11276   
2020 Trostnikov MV, Veselkina ER, Krementsova AV, Boldyrev SV, Roshina NV, Pasyukova EG. Modulated Expression of the Protein Kinase GSK3 in Motor and Dopaminergic Neurons Increases Female Lifespan in . Frontiers in Genetics. 11: 668. PMID 32695143 DOI: 10.3389/fgene.2020.00668   
2020 Datta P, Ruffcorn A, Seo S. Limited time window for retinal gene therapy in a preclinical model of ciliopathy. Human Molecular Genetics. PMID 32568387 DOI: 10.1093/hmg/ddaa124   
2020 Ferre-Fernández JJ, Sorokina EA, Thompson S, Collery RF, Nordquist E, Lincoln J, Semina EV. Disruption of foxc1 genes in zebrafish results in dosage-dependent phenotypes overlapping Axenfeld-Rieger syndrome. Human Molecular Genetics. PMID 32720677 DOI: 10.1093/hmg/ddaa163   
2020 Afouda BA, Nakamura Y, Shaw S, Charney RM, Paraiso KD, Blitz IL, Cho KWY, Hoppler S. Foxh1/Nodal Defines Context-Specific Direct Maternal Wnt/β-Catenin Target Gene Regulation in Early Development. Iscience. 23: 101314. PMID 32650116 DOI: 10.1016/j.isci.2020.101314   
2020 Wang F, Li P, Li FS. Integrated Analysis of a Gene Correlation Network Identifies Critical Regulation of Fibrosis by lncRNAs and TFs in Idiopathic Pulmonary Fibrosis. Biomed Research International. 2020: 6537462. PMID 32596346 DOI: 10.1155/2020/6537462   
2020 Martinez CA, Cambra JM, Gil MA, Parrilla I, Alvarez-Rodriguez M, Rodriguez-Martinez H, Cuello C, Martinez EA. Seminal Plasma Induces Overexpression of Genes Associated with Embryo Development and Implantation in Day-6 Porcine Blastocysts. International Journal of Molecular Sciences. 21. PMID 32455957 DOI: 10.3390/ijms21103662   
2020 Wang X, Ye L, Lyu M, Ursache R, Löytynoja A, Mähönen AP. An inducible genome editing system for plants. Nature Plants. PMID 32601420 DOI: 10.1038/s41477-020-0695-2   
2020 Aquino-Nunez W, Mielko ZE, Dunn T, Santorella EM, Hosea C, Leitner L, McCalla D, Simms C, Verola WM, Vijaykumar S, Hudson ML. /NeuroD1 Functions with the Homeobox Gene /Vax2 and Hox Gene /Labial to Specify Aspects of RME and DD Neuron Fate in . G3 (Bethesda, Md.). PMID 32601060 DOI: 10.1534/g3.120.401515   
2020 Tan M, van Tol HTA, Mokry M, Stout TAE, Roelen BAJ. Microinjection induces changes in the transcriptome of bovine oocytes. Scientific Reports. 10: 11211. PMID 32641751 DOI: 10.1038/s41598-020-67603-4   
2020 Can H, Chanumolu SK, Gonzalez-Muñoz E, Prukudom S, Otu HH, Cibelli JB. Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes. Bmc Genomics. 21: 471. PMID 32640983 DOI: 10.1186/s12864-020-06860-z   
2020 Yazici H, Wu HC, Tigli H, Yilmaz EZ, Kebudi R, Santella RM. High levels of global genome methylation in patients with retinoblastoma. Oncology Letters. 20: 715-723. PMID 32565997 DOI: 10.3892/ol.2020.11613   
2020 Zhu J, Sun M, Wang Y, Bi H, Xue C. Gene expression profile analysis on different stages of hypertrophic scarring in a rabbit ear model. Experimental and Therapeutic Medicine. 20: 1505-1513. PMID 32742383 DOI: 10.3892/etm.2020.8879   
2020 Hosur V, Low BE, Li D, Stafford GA, Kohar V, Shultz LD, Wiles MV. Genes adapt to outsmart gene-targeting strategies in mutant mouse strains by skipping exons to reinitiate transcription and translation. Genome Biology. 21: 168. PMID 32646486 DOI: 10.1186/s13059-020-02086-0   
2020 Nagar P, Kumar A, Jain M, Kumari S, Mustafiz A. Genome-wide analysis and transcript profiling of PSKR gene family members in Oryza sativa. Plos One. 15: e0236349. PMID 32701993 DOI: 10.1371/journal.pone.0236349   
2020 Zhao H, Jiang A, Yu M, Bao H. Identification of biomarkers correlated with diagnosis and prognosis of endometrial cancer using bioinformatics analysis. Journal of Cellular Biochemistry. PMID 32692884 DOI: 10.1002/jcb.29819   
2020 Wang XW, Lv JL, Shi YR, Guo LY. Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in . Frontiers in Genetics. 11: 508. PMID 32508886 DOI: 10.3389/fgene.2020.00508   
2020 Wang XW, Lv JL, Shi YR, Guo LY. Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in . Frontiers in Genetics. 11: 508. PMID 32508886 DOI: 10.3389/fgene.2020.00508   
2020 Xu P, Ze LJ, Kang WN, Wu JJ, Jin L, Anjum AA, Li GQ. Functional divergence of white genes in Henosepilachna vigintioctopunctata revealed by RNA interference. Insect Molecular Biology. PMID 32654258 DOI: 10.1111/imb.12656   
2020 Li X, Ren Z, Xiong C, Geng J, Li Y, Liu C, Ren C, Liu H. Minichromosome maintenance 6 complex component identified by bioinformatics analysis and experimental validation in esophageal squamous cell carcinoma. Oncology Reports. PMID 32583000 DOI: 10.3892/or.2020.7658   
2020 Zhang H, Huo J, Jiang W, Shan Q. Integrated microarray analysis to identify potential biomarkers and therapeutic targets in dilated cardiomyopathy. Molecular Medicine Reports. 22: 915-925. PMID 32626989 DOI: 10.3892/mmr.2020.11145   
2020 Sato T, Kataoka K, Ito Y, Yokoyama S, Inui M, Mori M, Takahashi S, Akita K, Takada S, Ueno-Kudoh H, Asahara H. pathway modulates the code via regulation during axial patterning in vertebrates. Elife. 9. PMID 32479258 DOI: 10.7554/eLife.53608   
2020 Kim SM, Cho SY, Kim MW, Roh SR, Shin HS, Suh YH, Geum D, Lee MA. Genome-Wide Analysis Identifies NURR1-Controlled Network of New Synapse Formation and Cell Cycle Arrest in Human Neural Stem Cells. Molecules and Cells. PMID 32522891 DOI: 10.14348/molcells.2020.0071   
2020 You L, Liu A, Sang X, Gao X, Li T, Zhang S, Li K, Wang W, Huang G, Wang T, Xu A. Integrated Analyses of lncRNA and mRNA Profiles Reveal Characteristic and Functional Changes of Leukocytes in Qi-Deficiency Constitution and Pi-Qi-Deficiency Syndrome of Chronic Superficial Gastritis. Evidence-Based Complementary and Alternative Medicine : Ecam. 2020: 8518053. PMID 32724329 DOI: 10.1155/2020/8518053   
2020 Vandermeulen MD, Cullen PJ. New Aspects of Invasive Growth Regulation Identified by Functional Profiling of MAPK Pathway Targets in . Genetics. PMID 32665277 DOI: 10.1534/genetics.120.303369   
2020 Chen D, Li Z, Liu Y, Sampaio N, Yang D, Aksentijevich I, Boehm M, Chen G. Human induced pluripotent stem cells generated from a patient with a homozygous L272P mutation in the OTULIN gene (NIHTVBi014-A). Stem Cell Research. 47: 101921. PMID 32721894 DOI: 10.1016/j.scr.2020.101921   
2020 Yang X, Zhou C, Long G, Yang H, Chen C, Jin D. Characterization and functional analysis of chitinase family genes involved in nymph-adult transition of Sogatella furcifera. Insect Science. PMID 32536018 DOI: 10.1111/1744-7917.12839