Seth I. Berger, Ph.D. - Publications

2010 Pharmacology and System Biology Icahn School of Medicine at Mount Sinai, New York, NY, United States 
Cellular signaling systems

12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Dumitriu D, Berger SI, Hamo C, Hara Y, Bailey M, Hamo A, Grossman YS, Janssen WG, Morrison JH. Vamping: stereology-based automated quantification of fluorescent puncta size and density. Journal of Neuroscience Methods. 209: 97-105. PMID 22683698 DOI: 10.1016/J.Jneumeth.2012.05.031  1
2011 Berger SI, Iyengar R. Role of systems pharmacology in understanding drug adverse events. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 3: 129-35. PMID 20803507 DOI: 10.1002/Wsbm.114  1
2010 Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinformatics (Oxford, England). 26: 2438-44. PMID 20709693 DOI: 10.1093/Bioinformatics/Btq466  1
2010 Berger SI, Ma'ayan A, Iyengar R. Systems pharmacology of arrhythmias. Science Signaling. 3: ra30. PMID 20407125 DOI: 10.1126/Scisignal.2000723  1
2010 Berger SI, Iyengar R, Van Hook AM. Science Signaling podcast: 20 April 2010 Science Signaling. 3: pc8. DOI: 10.1126/Scisignal.3118Pc8  1
2009 Berger SI, Iyengar R. Network analyses in systems pharmacology. Bioinformatics (Oxford, England). 25: 2466-72. PMID 19648136 DOI: 10.1093/Bioinformatics/Btp465  1
2009 Wist AD, Berger SI, Iyengar R. Systems pharmacology and genome medicine: a future perspective. Genome Medicine. 1: 11. PMID 19348698 DOI: 10.1186/Gm11  1
2009 Ma'ayan A, Jenkins SL, Webb RL, Berger SI, Purushothaman SP, Abul-Husn NS, Posner JM, Flores T, Iyengar R. SNAVI: Desktop application for analysis and visualization of large-scale signaling networks. Bmc Systems Biology. 3: 10. PMID 19154595 DOI: 10.1186/1752-0509-3-10  1
2008 Chakravarty S, Godbole S, Zhang B, Berger S, Sanchez R. Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure Bmc Structural Biology. 8. PMID 18631402 DOI: 10.1186/1472-6807-8-31  1
2007 Berger SI, Posner JM, Ma'ayan A. Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases. Bmc Bioinformatics. 8: 372. PMID 17916244 DOI: 10.1186/1471-2105-8-372  1
2007 Berger SI, Iyengar R, Ma'ayan A. AVIS: AJAX viewer of interactive signaling networks. Bioinformatics (Oxford, England). 23: 2803-5. PMID 17855420 DOI: 10.1093/Bioinformatics/Btm444  1
2007 Posner JI, Berger S, Ma'ayan AM. Genes2Networks: Connecting Lists of Proteins by Using Background Literature-based Mammalian Networks Nature Precedings. 2: 1-1. DOI: 10.1038/Npre.2007.35.2  0.56
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