Seth I. Berger, Ph.D. - Related publications

Affiliations: 
2010 Pharmacology and System Biology Icahn School of Medicine at Mount Sinai, New York, NY, United States 
Area:
Cellular signaling systems
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17 most relevant papers in past 60 days:
Year Citation  Score
2021 Yu Z, Lu J, Jin Y, Yang Y. KenDTI: an ensemble model based on network integration and CNN for drug-target interaction prediction. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33877984 DOI: 10.1109/TCBB.2021.3074401   
2021 Wang J, Wang W, Yan C, Luo J, Zhang G. Predicting Drug-Disease Association Based on Ensemble Strategy. Frontiers in Genetics. 12: 666575. PMID 34012464 DOI: 10.3389/fgene.2021.666575   
2021 Wang J, Wu Z, Peng Y, Li W, Liu G, Tang Y. Pathway-Based Drug Repurposing with DPNetinfer: A Method to Predict Drug-Pathway Associations via Network-Based Approaches. Journal of Chemical Information and Modeling. PMID 33900090 DOI: 10.1021/acs.jcim.1c00009   
2021 Lazareva O, Baumbach J, List M, Blumenthal DB. On the limits of active module identification. Briefings in Bioinformatics. PMID 33782690 DOI: 10.1093/bib/bbab066   
2021 Katz S, Song J, Webb KP, Lounsbury NW, Bryant CE, Fraser IDC. SIGNAL: A web-based iterative analysis platform integrating pathway and network approaches optimizes hit selection from genome-scale assays. Cell Systems. 12: 338-352.e5. PMID 33894945 DOI: 10.1016/j.cels.2021.03.001   
2021 Pirch S, Müller F, Iofinova E, Pazmandi J, Hütter CVR, Chiettini M, Sin C, Boztug K, Podkosova I, Kaufmann H, Menche J. The VRNetzer platform enables interactive network analysis in Virtual Reality. Nature Communications. 12: 2432. PMID 33893283 DOI: 10.1038/s41467-021-22570-w   
2021 Liu Z, Chen Q, Lan W, Pan H, Hao X, Pan S. GADTI: Graph Autoencoder Approach for DTI Prediction From Heterogeneous Network. Frontiers in Genetics. 12: 650821. PMID 33912218 DOI: 10.3389/fgene.2021.650821   
2021 Nguyen T, Lee S, Quinn T, Truong B, Li X, Tran T, Venkatesh S, Le TD. PAN: Personalized Annotation-based Networks for the Prediction of Breast Cancer Relapse. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33909569 DOI: 10.1109/TCBB.2021.3076422   
2021 He W, Tang J, Zou Q, Guo F. MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction. Briefings in Bioinformatics. PMID 33939795 DOI: 10.1093/bib/bbab166   
2021 Morselli Gysi D, do Valle Í, Zitnik M, Ameli A, Gan X, Varol O, Ghiassian SD, Patten JJ, Davey RA, Loscalzo J, Barabási AL. Network medicine framework for identifying drug-repurposing opportunities for COVID-19. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33906951 DOI: 10.1073/pnas.2025581118   
2021 Lv Y, Huang S, Zhang T, Gao B. Application of Multilayer Network Models in Bioinformatics. Frontiers in Genetics. 12: 664860. PMID 33868392 DOI: 10.3389/fgene.2021.664860   
2021 Baek K, Bang D, Shim H. GridMix: Strong regularization through local context mapping Pattern Recognition. 109: 107594. DOI: 10.1016/J.Patcog.2020.107594   
2021 Avershina E, Sharma P, Taxt AM, Singh H, Frye SA, Paul K, Kapil A, Naseer U, Kaur P, Ahmad R. AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in and . Computational and Structural Biotechnology Journal. 19: 1896-1906. PMID 33897984 DOI: 10.1016/j.csbj.2021.03.027   
2021 Guo WF, Yu X, Shi QQ, Liang J, Zhang SW, Zeng T. Performance assessment of sample-specific network control methods for bulk and single-cell biological data analysis. Plos Computational Biology. 17: e1008962. PMID 33956788 DOI: 10.1371/journal.pcbi.1008962   
2021 Calura E, Martini P. Summarizing RNA-Seq Data or Differentially Expressed Genes Using Gene Set, Network, or Pathway Analysis. Methods in Molecular Biology (Clifton, N.J.). 2284: 147-179. PMID 33835442 DOI: 10.1007/978-1-0716-1307-8_9   
2021 Fu J, Zhang Y, Liu J, Lian X, Tang J, Zhu F. Pharmacometabonomics: data processing and statistical analysis. Briefings in Bioinformatics. PMID 33866355 DOI: 10.1093/bib/bbab138   
2021 Zhao ZY, Huang WZ, Zhan XK, Pan J, Huang YA, Zhang SW, Yu CQ. An Ensemble Learning-Based Method for Inferring Drug-Target Interactions Combining Protein Sequences and Drug Fingerprints. Biomed Research International. 2021: 9933873. PMID 33987446 DOI: 10.1155/2021/9933873