| Year |
Citation |
Score |
| 2020 |
Fang FC, Naccache SN, Greninger AL. The Laboratory Diagnosis of COVID-19-- Frequently-Asked Questions. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32511679 DOI: 10.1093/Cid/Ciaa742 |
0.379 |
|
| 2020 |
Lieberman JA, Pepper G, Naccache SN, Huang ML, Jerome KR, Greninger AL. Comparison of Commercially Available and Laboratory Developed Assays for Detection of SARS-CoV-2 in Clinical Laboratories. Journal of Clinical Microbiology. PMID 32350048 DOI: 10.1128/Jcm.00821-20 |
0.354 |
|
| 2020 |
Buchan BW, Windham S, Balada-Llasat JM, Leber A, Harrington A, Relich R, Murphy C, Dien Bard J, Naccache S, Ronen S, Hopp A, Mahmutoglu D, Faron ML, Ledeboer NA, Carroll A, et al. Practical comparison of the BioFire® FilmArray® Pneumonia Panel to routine diagnostic methods and potential impact on antimicrobial stewardship in adult hospitalized patients with lower respiratory tract infections. Journal of Clinical Microbiology. PMID 32350045 DOI: 10.1128/Jcm.00135-20 |
0.37 |
|
| 2020 |
Murphy CN, Fowler R, Balada-Llasat JM, Carroll A, Stone H, Akerele O, Buchan B, Windham S, Hopp A, Ronen S, Relich RF, Buckner R, Warren DA, Humphries R, Campeau S, ... ... Naccache S, et al. Multicenter Evaluation of the BioFire® FilmArray® Pneumonia/Pneumonia Panel for the Detection and Quantification of Agents of Lower Respiratory Tract Infection. Journal of Clinical Microbiology. PMID 32350043 DOI: 10.1128/Jcm.00128-20 |
0.368 |
|
| 2019 |
Precit MR, Yee R, Pandey U, Fahit M, Pool C, Naccache SN, Bard JD. Cerebrospinal Fluid Findings are Poor Predictors of Appropriate FilmArray Meningitis/Encephalitis Panel Utilization in Pediatric Patients. Journal of Clinical Microbiology. PMID 31852767 DOI: 10.1128/Jcm.01592-19 |
0.311 |
|
| 2019 |
Li T, Mbala-Kingebeni P, Naccache SN, Thézé J, Bouquet J, Federman S, Somasekar S, Yu G, Sanchez-San Martin C, Achari A, Schneider BS, Rimoin AW, Rambaut A, Nsio J, Mulembakani P, et al. Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo. Journal of Clinical Microbiology. PMID 31315955 DOI: 10.1128/Jcm.00827-19 |
0.451 |
|
| 2019 |
Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, ... ... Naccache SN, et al. Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis. The New England Journal of Medicine. 380: 2327-2340. PMID 31189036 DOI: 10.1056/Nejmoa1803396 |
0.394 |
|
| 2019 |
Miller S, Naccache SN, Samayoa E, Messacar K, Arevalo S, Federman S, Stryke D, Pham E, Fung B, Bolosky WJ, Ingebrigtsen D, Lorizio W, Paff SM, Leake JA, Pesano R, et al. Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid. Genome Research. PMID 30992304 DOI: 10.1101/Gr.238170.118 |
0.421 |
|
| 2018 |
Naccache SN, Lustestica M, Fahit M, Mestas J, Dien Bard J. One year in the life of a rapid syndromic panel for meningitis/encephalitis: a pediatric tertiary care facility's experience. Journal of Clinical Microbiology. PMID 29540454 DOI: 10.1128/Jcm.01940-17 |
0.358 |
|
| 2018 |
Wilson M, Sample H, Zorn K, Naccache SN, Miller S, Chiu CY. 2563. Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Meningitis and Encephalitis Open Forum Infectious Diseases. 5. DOI: 10.1093/Ofid/Ofy209.171 |
0.362 |
|
| 2017 |
Somasekar S, Lee D, Rule J, Naccache SN, Stone M, Busch MP, Sanders C, Lee WM, Chiu CY. Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 29020199 DOI: 10.1093/Cid/Cix596 |
0.336 |
|
| 2017 |
Chiu CY, Coffey LL, Murkey J, Symmes K, Sample HA, Wilson MR, Naccache SN, Arevalo S, Somasekar S, Federman S, Stryke D, Vespa P, Schiller G, Messenger S, Humphries R, et al. Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016. Emerging Infectious Diseases. 23: 1964-1968. PMID 28930022 DOI: 10.3201/Eid2310.161986 |
0.424 |
|
| 2017 |
Mongkolrattanothai K, Naccache SN, Bender JM, Samayoa E, Pham E, Yu G, Dien Bard J, Miller S, Aldrovandi G, Chiu CY. Neurobrucellosis: Unexpected Answer From Metagenomic Next-Generation Sequencing. Journal of the Pediatric Infectious Diseases Society. PMID 28062553 DOI: 10.1093/Jpids/Piw066 |
0.373 |
|
| 2016 |
Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY. Distinct Zika Virus Lineage in Salvador, Bahia, Brazil. Emerging Infectious Diseases. 22. PMID 27448188 DOI: 10.3201/Eid2210.160663 |
0.381 |
|
| 2016 |
Sardi S, Somasekar S, Naccache SN, Bandeira AC, Tauro LB, Campos GS, Chiu CY. Co-Infections from Zika and Chikungunya Virus in Bahia, Brazil Identified by Metagenomic Next-Generation Sequencing. Journal of Clinical Microbiology. PMID 27413190 DOI: 10.1128/Jcm.00877-16 |
0.404 |
|
| 2016 |
Stramer SL, Yu G, Herron R, Espinoza N, Foster GA, Naccache SN, Brodsky JP, Ong E, Linnen JM, Dyer N, Styer LM, Parker MM, Chiu CY. Two human immunodeficiency virus Type 2 cases in US blood donors including serologic, molecular, and genomic characterization of an epidemiologically unusual case. Transfusion. PMID 27079968 DOI: 10.1111/Trf.13600 |
0.307 |
|
| 2015 |
Naccache SN, Greninger A, Samayoa E, Miller S, Chiu CY. Clinical Utility of Unbiased Metagenomic Next-Generation Sequencing in Diagnosis of Acute Infectious Diseases: A Prospective Case Series. Open Forum Infectious Diseases. 2: 103. PMID 27437408 DOI: 10.1093/Ofid/Ofv131.23 |
0.446 |
|
| 2015 |
Berg MG, Lee D, Coller K, Frankel M, Aronsohn A, Cheng K, Forberg K, Marcinkus M, Naccache SN, Dawson G, Brennan C, Jensen DM, Hackett J, Chiu CY. Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection. Plos Pathogens. 11: e1005325. PMID 26658760 DOI: 10.1016/S0168-8278(16)00677-2 |
0.339 |
|
| 2015 |
Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Klenschmidt-DeMasters BK, Dominguez SR, Chiu CY. Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Medicine. 7: 113. PMID 26620704 DOI: 10.1186/S13073-015-0235-2 |
0.37 |
|
| 2015 |
Luk KC, Berg MG, Naccache SN, Kabre B, Federman S, Mbanya D, Kaptué L, Chiu CY, Brennan CA, Hackett J. Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity. Plos One. 10: e0141723. PMID 26599538 DOI: 10.1371/Journal.Pone.0141723 |
0.349 |
|
| 2015 |
Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Medicine. 7: 99. PMID 26416663 DOI: 10.1186/S13073-015-0220-9 |
0.417 |
|
| 2015 |
Chiu CY, Bres V, Yu G, Krysztof D, Naccache SN, Lee D, Pfeil J, Linnen JM, Stramer SL. Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014. Emerging Infectious Diseases. 21: 1409-13. PMID 26196378 DOI: 10.3201/Eid2108.150458 |
0.42 |
|
| 2015 |
Saglam O, Samayoa E, Somasekar S, Naccache S, Iwasaki A, Chiu CY. No viral association found in a set of differentiated vulvar intraepithelial neoplasia cases by human papillomavirus and pan-viral microarray testing. Plos One. 10: e0125292. PMID 25894343 DOI: 10.1371/Journal.Pone.0125292 |
0.377 |
|
| 2015 |
Deng X, Naccache SN, Ng T, Federman S, Li L, Chiu CY, Delwart EL. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Research. 43: e46. PMID 25586223 DOI: 10.1093/Nar/Gkv002 |
0.351 |
|
| 2015 |
Naccache SN, Peggs KS, Mattes FM, Phadke R, Garson JA, Grant P, Samayoa E, Federman S, Miller S, Lunn MP, Gant V, Chiu CY. Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 60: 919-23. PMID 25572898 DOI: 10.1093/Cid/Ciu912 |
0.372 |
|
| 2015 |
Nomura Y, Greninger A, Messacar K, Dunnebacke T, Naccache SN, Bouquet J, Mirsky D, Press C, Kleinschmidt-Demasters BK, Parker S, Dominguez S, Chiu CY. Balamuthia Mandrillaris Encephalitis Detected by Next Generation Sequencing of Cerebrospinal Fluid Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv133.137 |
0.34 |
|
| 2014 |
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Research. 24: 1180-92. PMID 24899342 DOI: 10.1101/Gr.171934.113 |
0.399 |
|
| 2014 |
Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. The New England Journal of Medicine. 370: 2408-17. PMID 24896819 DOI: 10.1056/Nejmoa1401268 |
0.401 |
|
| 2014 |
Naccache SN, Hackett J, Delwart EL, Chiu CY. Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis. Proceedings of the National Academy of Sciences of the United States of America. 111: E976. PMID 24572576 DOI: 10.1073/Pnas.1317064111 |
0.384 |
|
| 2013 |
Naccache SN, Greninger AL, Lee D, Coffey LL, Phan T, Rein-Weston A, Aronsohn A, Hackett J, Delwart EL, Chiu CY. The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. Journal of Virology. 87: 11966-77. PMID 24027301 DOI: 10.1128/Jvi.02323-13 |
0.389 |
|
| 2013 |
Swei A, Russell BJ, Naccache SN, Kabre B, Veeraraghavan N, Pilgard MA, Johnson BJ, Chiu CY. The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick. Plos One. 8: e62083. PMID 23637969 DOI: 10.1371/Journal.Pone.0062083 |
0.433 |
|
| Show low-probability matches. |