Michael Z. Lin - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Protein engineering applied to visualizing and controlling signal transduction
Website:
linlab.stanford.edu

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yang Y, Geng Y, Jiang D, Ning L, Kim HJ, Jeon NL, Lau A, Chen L, Lin MZ. Kinase pathway inhibition restores PSD95 induction in neurons lacking fragile X mental retardation protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 31118285 DOI: 10.1073/pnas.1812056116  1
2019 Chung HK, Zou X, Bajar BT, Brand VR, Huo Y, Alcudia JF, Ferrell JE, Lin MZ. A compact synthetic pathway rewires cancer signaling to therapeutic effector release. Science (New York, N.Y.). 364. PMID 31048459 DOI: 10.1126/science.aat6982  1
2019 Oh Y, Park Y, Cho JH, Wu H, Paulk NK, Liu LX, Kim N, Kay MA, Wu JC, Lin MZ. An orange calcium-modulated bioluminescent indicator for non-invasive activity imaging. Nature Chemical Biology. PMID 30936501 DOI: 10.1038/s41589-019-0256-z  1
2018 Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, ... ... Lin MZ, et al. A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality. Cell. 174: 465-480.e22. PMID 30007418 DOI: 10.1016/j.cell.2018.06.035  1
2018 Jacobs CL, Badiee RK, Lin MZ. StaPLs: versatile genetically encoded modules for engineering drug-inducible proteins. Nature Methods. 15: 523-526. PMID 29967496 DOI: 10.1038/s41592-018-0041-z  1
2018 Xu F, Shi DQ, Lau PM, Lin MZ, Bi GQ. Excitation wavelength optimization improves photostability of ASAP-family GEVIs. Molecular Brain. 11: 32. PMID 29866136 DOI: 10.1186/s13041-018-0374-7  0.36
2017 Zhou XX, Zou X, Chung HK, Gao Y, Liu Y, Qi LS, Lin MZ. A single-chain photoswitchable CRISPR-Cas9 architecture for light-inducible gene editing and transcription. Acs Chemical Biology. PMID 28938067 DOI: 10.1021/acschembio.7b00603  1
2017 Duan L, Hope J, Ong Q, Lou HY, Kim N, McCarthy C, Acero V, Lin MZ, Cui B. Understanding CRY2 interactions for optical control of intracellular signaling. Nature Communications. 8: 547. PMID 28916751 DOI: 10.1038/s41467-017-00648-8  1
2017 Chamberland S, Yang HH, Pan MM, Evans SW, Guan S, Chavarha M, Yang Y, Salesse C, Wu H, Wu JC, Clandinin TR, Toth K, Lin MZ, St-Pierre F. Fast two-photon imaging of subcellular voltage dynamics in neuronal tissue with genetically encoded indicators. Elife. 6. PMID 28749338 DOI: 10.7554/eLife.25690  1
2017 Zhou XX, Fan LZ, Li P, Shen K, Lin MZ. Optical control of cell signaling by single-chain photoswitchable kinases. Science (New York, N.Y.). 355: 836-842. PMID 28232577 DOI: 10.1126/science.aah3605  1
2016 Marshall JD, Li JZ, Zhang Y, Gong Y, St-Pierre F, Lin MZ, Schnitzer MJ. Cell-Type-Specific Optical Recording of Membrane Voltage Dynamics in Freely Moving Mice. Cell. 167: 1650-1662.e15. PMID 27912066 DOI: 10.1016/j.cell.2016.11.021  1
2016 Rodriguez EA, Campbell RE, Lin JY, Lin MZ, Miyawaki A, Palmer AE, Shu X, Zhang J, Tsien RY. The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins. Trends in Biochemical Sciences. PMID 27814948 DOI: 10.1016/j.tibs.2016.09.010  1
2016 Bajar BT, Lam AJ, Badiee RK, Oh YH, Chu J, Zhou XX, Kim N, Kim BB, Chung M, Yablonovitch AL, Cruz BF, Kulalert K, Tao JJ, Meyer T, Su XD, ... Lin MZ, et al. Fluorescent indicators for simultaneous reporting of all four cell cycle phases. Nature Methods. PMID 27798610 DOI: 10.1038/nmeth.4045  1
2016 Laviv T, Kim BB, Chu J, Lam AJ, Lin MZ, Yasuda R. Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins. Nature Methods. PMID 27798609 DOI: 10.1038/nmeth.4046  1
2016 Bajar BT, Wang ES, Zhang S, Lin MZ, Chu J. A Guide to Fluorescent Protein FRET Pairs. Sensors (Basel, Switzerland). 16. PMID 27649177 DOI: 10.3390/s16091488  1
2016 Lin MZ, Schnitzer MJ. Genetically encoded indicators of neuronal activity. Nature Neuroscience. 19: 1142-1153. PMID 27571193 DOI: 10.1038/nn.4359  1
2016 Yang HH, St-Pierre F, Sun X, Ding X, Lin MZ, Clandinin TR. Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo. Cell. PMID 27264607 DOI: 10.1016/j.cell.2016.05.031  1
2016 Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin JJ, Laviv T, Welf ES, Dean KM, Zhang F, Kim BB, Tang CT, Hu M, Baird MA, Davidson MW, ... ... Lin MZ, et al. A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo. Nature Biotechnology. PMID 27240196 DOI: 10.1038/nbt.3550  1
2016 Welf ES, Driscoll MK, Dean KM, Schäfer C, Chu J, Davidson MW, Lin MZ, Danuser G, Fiolka R. Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments. Developmental Cell. 36: 462-75. PMID 26906741 DOI: 10.1016/j.devcel.2016.01.022  1
2016 Bajar BT, Wang ES, Lam AJ, Kim BB, Jacobs CL, Howe ES, Davidson MW, Lin MZ, Chu J. Improving brightness and photostability of green and red fluorescent proteins for live cell imaging and FRET reporting. Scientific Reports. 6: 20889. PMID 26879144 DOI: 10.1038/srep20889  1
2015 Yan D, Weisshaar M, Lamb K, Chung HK, Lin M, Plemper RK. Replication-Competent Influenza Virus and Respiratory Syncytial Virus Luciferase Reporter Strains Engineered for Co-Infections Identify Antiviral Compounds in Combination Screens. Biochemistry. PMID 26307636 DOI: 10.1021/acs.biochem.5b00623  1
2015 Zhou XX, Pan M, Lin MZ. Investigating neuronal function with optically controllable proteins. Frontiers in Molecular Neuroscience. 8: 37. PMID 26257603 DOI: 10.3389/fnmol.2015.00037  1
2015 Chung HK, Jacobs CL, Huo Y, Yang J, Krumm SA, Plemper RK, Tsien RY, Lin MZ. Tunable and reversible drug control of protein production via a self-excising degron. Nature Chemical Biology. 11: 713-20. PMID 26214256 DOI: 10.1038/nchembio.1869  1
2015 St-Pierre F, Chavarha M, Lin MZ. Designs and sensing mechanisms of genetically encoded fluorescent voltage indicators. Current Opinion in Chemical Biology. 27: 31-8. PMID 26079047 DOI: 10.1016/j.cbpa.2015.05.003  1
2015 Fan LZ, Lin MZ. Optical control of biological processes by light-switchable proteins. Wiley Interdisciplinary Reviews. Developmental Biology. PMID 25858669 DOI: 10.1002/wdev.188  1
2015 Lin M. Ultrafast fluorescent probes for brain activity imaging Cleo: Qels - Fundamental Science, Cleo_qels 2015. 1551p. DOI: 10.1364/CLEO_AT.2015.JTu2D.4  1
2015 Zhou XX, Lin MZ. Experimental systems for optogenetic control of protein activity with photodissociable fluorescent proteins Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9305. DOI: 10.1117/12.2081242  1
2015 St-Pierre F, Chavarha M, Lin MZ. Designs and sensing mechanisms of genetically encoded fluorescent voltage indicators Current Opinion in Chemical Biology. 27: 31-38. DOI: 10.1016/j.cbpa.2015.05.003  1
2014 St-Pierre F, Marshall JD, Yang Y, Gong Y, Schnitzer MJ, Lin MZ. High-fidelity optical reporting of neuronal electrical activity with an ultrafast fluorescent voltage sensor. Nature Neuroscience. 17: 884-9. PMID 24755780 DOI: 10.1038/nn.3709  1
2014 Chu J, Haynes RD, Corbel SY, Li P, González-González E, Burg JS, Ataie NJ, Lam AJ, Cranfill PJ, Baird MA, Davidson MW, Ng HL, Garcia KC, Contag CH, Shen K, ... ... Lin MZ, et al. Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein. Nature Methods. 11: 572-8. PMID 24633408 DOI: 10.1038/nmeth.2888  1
2013 Seong J, Tajik A, Sun J, Guan JL, Humphries MJ, Craig SE, Shekaran A, García AJ, Lu S, Lin MZ, Wang N, Wang Y. Distinct biophysical mechanisms of focal adhesion kinase mechanoactivation by different extracellular matrix proteins. Proceedings of the National Academy of Sciences of the United States of America. 110: 19372-7. PMID 24222685 DOI: 10.1073/pnas.1307405110  1
2013 Ntziachristos V, Achilefu S, Wang YP, Lin M. Special section on fluorescence molecular imaging honoring Prof. Roger Tsien, a pioneer in biomedical optics. Journal of Biomedical Optics. 18: 101301. PMID 24169645 DOI: 10.1117/1.JBO.18.10.101301  1
2013 Kim B, Lin MZ. Optobiology: optical control of biological processes via protein engineering. Biochemical Society Transactions. 41: 1183-8. PMID 24059506 DOI: 10.1042/BST20130150  1
2013 Zhou XX, Lin MZ. Photoswitchable fluorescent proteins: ten years of colorful chemistry and exciting applications. Current Opinion in Chemical Biology. 17: 682-90. PMID 23876529 DOI: 10.1016/j.cbpa.2013.05.031  1
2012 Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE. New alternately colored FRET sensors for simultaneous monitoring of Zn²⁺ in multiple cellular locations. Plos One. 7: e49371. PMID 23173058 DOI: 10.1371/journal.pone.0049371  1
2012 Zhou XX, Chung HK, Lam AJ, Lin MZ. Optical control of protein activity by fluorescent protein domains. Science (New York, N.Y.). 338: 810-4. PMID 23139335 DOI: 10.1126/science.1226854  1
2012 Butko MT, Yang J, Geng Y, Kim HJ, Jeon NL, Shu X, Mackey MR, Ellisman MH, Tsien RY, Lin MZ. Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy. Nature Neuroscience. 15: 1742-51. PMID 23103964 DOI: 10.1038/nn.3246  1
2012 Lam AJ, St-Pierre F, Gong Y, Marshall JD, Cranfill PJ, Baird MA, McKeown MR, Wiedenmann J, Davidson MW, Schnitzer MJ, Tsien RY, Lin MZ. Improving FRET dynamic range with bright green and red fluorescent proteins. Nature Methods. 9: 1005-12. PMID 22961245 DOI: 10.1038/nmeth.2171  1
2011 Lin MZ. Beyond the rainbow: new fluorescent proteins brighten the infrared scene. Nature Methods. 8: 726-8. PMID 21878918 DOI: 10.1038/nmeth.1678  1
2010 Knöpfel T, Lin MZ, Levskaya A, Tian L, Lin JY, Boyden ES. Toward the second generation of optogenetic tools. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14998-5004. PMID 21068304 DOI: 10.1523/JNEUROSCI.4190-10.2010  1
2010 De Jaco A, Lin MZ, Dubi N, Comoletti D, Miller MT, Camp S, Ellisman M, Butko MT, Tsien RY, Taylor P. Neuroligin trafficking deficiencies arising from mutations in the alpha/beta-hydrolase fold protein family. The Journal of Biological Chemistry. 285: 28674-82. PMID 20615874 DOI: 10.1074/jbc.M110.139519  1
2010 Lin MZ, Tsien RY. TimeSTAMP tagging of newly synthesized proteins. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 26.5. PMID 20155731 DOI: 10.1002/0471140864.ps2605s59  1
2009 Lin MZ, McKeown MR, Ng HL, Aguilera TA, Shaner NC, Campbell RE, Adams SR, Gross LA, Ma W, Alber T, Tsien RY. Autofluorescent proteins with excitation in the optical window for intravital imaging in mammals. Chemistry & Biology. 16: 1169-79. PMID 19942140 DOI: 10.1016/j.chembiol.2009.10.009  1
2009 Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY. Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science (New York, N.Y.). 324: 804-7. PMID 19423828 DOI: 10.1126/science.1168683  1
2009 Lin JY, Lin MZ, Steinbach P, Tsien RY. Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophysical Journal. 96: 1803-14. PMID 19254539 DOI: 10.1016/j.bpj.2008.11.034  1
2009 Shaner NC, Lin MZ, Mckeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY. Evaluating and improving the photostability of fluorescent proteins Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7191. DOI: 10.1117/12.814684  1
2008 Lin MZ, Wang L. Selective labeling of proteins with chemical probes in living cells. Physiology (Bethesda, Md.). 23: 131-41. PMID 18556466 DOI: 10.1152/physiol.00007.2008  1
2008 Lin MZ, Glenn JS, Tsien RY. A drug-controllable tag for visualizing newly synthesized proteins in cells and whole animals. Proceedings of the National Academy of Sciences of the United States of America. 105: 7744-9. PMID 18511556 DOI: 10.1073/pnas.0803060105  1
2008 Shaner NC, Lin MZ, McKeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY. Improving the photostability of bright monomeric orange and red fluorescent proteins. Nature Methods. 5: 545-51. PMID 18454154 DOI: 10.1038/nmeth.1209  1
2005 Cowan CW, Shao YR, Sahin M, Shamah SM, Lin MZ, Greer PL, Gao S, Griffith EC, Brugge JS, Greenberg ME. Vav family GEFs link activated Ephs to endocytosis and axon guidance. Neuron. 46: 205-17. PMID 15848800 DOI: 10.1016/j.neuron.2005.03.019  1
2005 Sahin M, Greer PL, Lin MZ, Poucher H, Eberhart J, Schmidt S, Wright TM, Shamah SM, O'connell S, Cowan CW, Hu L, Goldberg JL, Debant A, Corfas G, Krull CE, et al. Eph-dependent tyrosine phosphorylation of ephexin1 modulates growth cone collapse. Neuron. 46: 191-204. PMID 15848799 DOI: 10.1016/j.neuron.2005.01.030  1
2005 Lin MZ, Teitell MA, Schiller GJ. The evolution of antibodies into versatile tumor-targeting agents. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 11: 129-38. PMID 15671537  1
2002 Datta SR, Ranger AM, Lin MZ, Sturgill JF, Ma YC, Cowan CW, Dikkes P, Korsmeyer SJ, Greenberg ME. Survival factor-mediated BAD phosphorylation raises the mitochondrial threshold for apoptosis. Developmental Cell. 3: 631-43. PMID 12431371 DOI: 10.1016/S1534-5807(02)00326-X  1
2001 Watson FL, Heerssen HM, Bhattacharyya A, Klesse L, Lin MZ, Segal RA. Neurotrophins use the Erk5 pathway to mediate a retrograde survival response. Nature Neuroscience. 4: 981-8. PMID 11544482 DOI: 10.1038/nn720  1
2001 Shamah SM, Lin MZ, Goldberg JL, Estrach S, Sahin M, Hu L, Bazalakova M, Neve RL, Corfas G, Debant A, Greenberg ME. EphA receptors regulate growth cone dynamics through the novel guanine nucleotide exchange factor ephexin. Cell. 105: 233-44. PMID 11336673 DOI: 10.1016/S0092-8674(01)00314-2  1
2001 Sun Y, Nadal-Vicens M, Misono S, Lin MZ, Zubiaga A, Hua X, Fan G, Greenberg ME. Neurogenin promotes neurogenesis and inhibits glial differentiation by independent mechanisms. Cell. 104: 365-76. PMID 11239394 DOI: 10.1016/S0092-8674(01)00224-0  1
2000 Dalva MB, Takasu MA, Lin MZ, Shamah SM, Hu L, Gale NW, Greenberg ME. EphB receptors interact with NMDA receptors and regulate excitatory synapse formation. Cell. 103: 945-56. PMID 11136979  1
2000 Lin MZ, Greenberg ME. Orchestral maneuvers in the axon: trio and the control of axon guidance. Cell. 101: 239-42. PMID 10847678  1
1999 Watson FL, Heerssen HM, Moheban DB, Lin MZ, Sauvageot CM, Bhattacharyya A, Pomeroy SL, Segal RA. Rapid nuclear responses to target-derived neurotrophins require retrograde transport of ligand-receptor complex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 7889-900. PMID 10479691  1
1999 Brunet A, Bonni A, Zigmond MJ, Lin MZ, Juo P, Hu LS, Anderson MJ, Arden KC, Blenis J, Greenberg ME. Akt promotes cell survival by phosphorylating and inhibiting a Forkhead transcription factor. Cell. 96: 857-68. PMID 10102273  1
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