| Year |
Citation |
Score |
| 2023 |
Tajima S, Kim YS, Fukuda M, Jo Y, Wang PY, Paggi JM, Inoue M, Byrne EFX, Kishi KE, Nakamura S, Ramakrishnan C, Takaramoto S, Nagata T, Konno M, Sugiura M, ... ... Dror RO, et al. Structural basis for ion selectivity in potassium-selective channelrhodopsins. Cell. PMID 37652010 DOI: 10.1016/j.cell.2023.08.009 |
0.441 |
|
| 2022 |
Qu Q, Huang W, Aydin D, Paggi JM, Seven AB, Wang H, Chakraborty S, Che T, DiBerto JF, Robertson MJ, Inoue A, Suomivuori CM, Roth BL, Majumdar S, Dror RO, et al. Insights into distinct signaling profiles of the µOR activated by diverse agonists. Nature Chemical Biology. PMID 36411392 DOI: 10.1038/s41589-022-01208-y |
0.687 |
|
| 2022 |
Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, ... ... Dror RO, et al. Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine. Cell. PMID 35114111 DOI: 10.1016/j.cell.2022.01.007 |
0.465 |
|
| 2022 |
Tsutsumi N, Maeda S, Qu Q, Vögele M, Jude KM, Suomivuori CM, Panova O, Waghray D, Kato HE, Velasco A, Dror RO, Skiniotis G, Kobilka BK, Garcia KC. Atypical structural snapshots of human cytomegalovirus GPCR interactions with host G proteins. Science Advances. 8: eabl5442. PMID 35061538 DOI: 10.1126/sciadv.abl5442 |
0.462 |
|
| 2021 |
Han L, Qu Q, Aydin D, Panova O, Robertson MJ, Xu Y, Dror RO, Skiniotis G, Feng L. Structure and mechanism of the SGLT family of glucose transporters. Nature. PMID 34880492 DOI: 10.1038/s41586-021-04211-w |
0.653 |
|
| 2021 |
Wood CAP, Zhang J, Aydin D, Xu Y, Andreone BJ, Langen UH, Dror RO, Gu C, Feng L. Structure and mechanism of blood-brain-barrier lipid transporter MFSD2A. Nature. PMID 34349262 DOI: 10.1038/s41586-021-03782-y |
0.662 |
|
| 2021 |
Kelly B, Hollingsworth SA, Blakemore DC, Owen RM, Storer RI, Swain NA, Aydin D, Torella R, Warmus JS, Dror RO. Delineating the Ligand-Receptor Interactions That Lead to Biased Signaling at the μ-Opioid Receptor. Journal of Chemical Information and Modeling. PMID 34251810 DOI: 10.1021/acs.jcim.1c00585 |
0.69 |
|
| 2020 |
Huang W, Manglik A, Venkatakrishnan AJ, Laeremans T, Feinberg EN, Sanborn AL, Kato HE, Livingston KE, Thorsen TS, Kling RC, Granier S, Gmeiner P, Husbands SM, Traynor JR, Weis WI, ... ... Dror RO, et al. Author Correction: Structural insights into μ-opioid receptor activation. Nature. PMID 32724208 DOI: 10.1038/S41586-020-2542-Z |
0.47 |
|
| 2019 |
Kato HE, Zhang Y, Hu H, Suomivuori CM, Kadji FMN, Aoki J, Krishna Kumar K, Fonseca R, Hilger D, Huang W, Latorraca NR, Inoue A, Dror RO, Kobilka BK, Skiniotis G. Conformational transitions of a neurotensin receptor 1-G complex. Nature. PMID 31243364 DOI: 10.1038/s41586-019-1337-6 |
0.512 |
|
| 2018 |
Krishna Kumar K, Shalev-Benami M, Robertson MJ, Hu H, Banister SD, Hollingsworth SA, Latorraca NR, Kato HE, Hilger D, Maeda S, Weis WI, Farrens DL, Dror RO, Malhotra SV, Kobilka BK, et al. Structure of a Signaling Cannabinoid Receptor 1-G Protein Complex. Cell. PMID 30639101 DOI: 10.1016/J.Cell.2018.11.040 |
0.514 |
|
| 2018 |
Kato HE, Kim YS, Paggi JM, Evans KE, Allen WE, Richardson C, Inoue K, Ito S, Ramakrishnan C, Fenno LE, Yamashita K, Hilger D, Lee SY, Berndt A, Shen K, ... ... Dror RO, et al. Structural mechanisms of selectivity and gating in anion channelrhodopsins. Nature. PMID 30158697 DOI: 10.1038/S41586-018-0504-5 |
0.467 |
|
| 2018 |
Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, Fenno LE, Evans KE, Paggi JM, Dror RO, Kandori H, Kobilka BK, Deisseroth K. Crystal structure of the natural anion-conducting channelrhodopsin GtACR1. Nature. PMID 30158696 DOI: 10.1038/S41586-018-0511-6 |
0.488 |
|
| 2015 |
Huang W, Manglik A, Venkatakrishnan AJ, Laeremans T, Feinberg EN, Sanborn AL, Kato HE, Livingston KE, Thorsen TS, Kling RC, Granier S, Gmeiner P, Husbands SM, Traynor JR, Weis WI, ... ... Dror RO, et al. Structural insights into µ-opioid receptor activation. Nature. 524: 315-21. PMID 26245379 DOI: 10.1038/Nature14886 |
0.538 |
|
| 2011 |
Rosenbaum DM, Zhang C, Lyons JA, Holl R, Aragao D, Arlow DH, Rasmussen SG, Choi HJ, Devree BT, Sunahara RK, Chae PS, Gellman SH, Dror RO, Shaw DE, Weis WI, et al. Structure and function of an irreversible agonist-β(2) adrenoceptor complex. Nature. 469: 236-40. PMID 21228876 DOI: 10.1038/Nature09665 |
0.301 |
|
| 2004 |
Dror RO, Willsky AS, Adelson EH. Statistical characterization of real-world illumination. Journal of Vision. 4: 821-37. PMID 15493972 DOI: 10:1167/4.9.11 |
0.504 |
|
| 2003 |
Fleming RW, Dror RO, Adelson EH. Real-world illumination and the perception of surface reflectance properties. Journal of Vision. 3: 347-68. PMID 12875632 DOI: 10:1167/3.5.3 |
0.624 |
|
| 2003 |
Fleming RW, Torralba A, Dror RO, Adelson EH. How image statistics drive shape-from-texture and shape-from-specularity Journal of Vision. 3: 73a. DOI: 10.1167/3.9.73 |
0.578 |
|
| 2001 |
Fleming RW, Dror RO, Adelson EH. Surface reflectance estimation under unknown natural illumination Journal of Vision. 1: 43a. DOI: 10.1167/1.3.43 |
0.618 |
|
| 2001 |
Dror RO, Adelson EH, Willsky AS. Estimating surface reflectance properties from images under unknown illumination Proceedings of Spie - the International Society For Optical Engineering. 4299: 231-242. DOI: 10.1117/12.429494 |
0.518 |
|
| 2001 |
Dror RO, Leung TK, Adelson EH, Willsky AS. Statistics of real-world illumination Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: II164-II171. |
0.479 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2023 |
Krishna Kumar K, Robertson MJ, Thadhani E, Wang H, Suomivuori CM, Powers AS, Ji L, Nikas SP, Dror RO, Inoue A, Makriyannis A, Skiniotis G, Kobilka B. Structural basis for activation of CB1 by an endocannabinoid analog. Nature Communications. 14: 2672. PMID 37160876 DOI: 10.1038/s41467-023-37864-4 |
0.296 |
|
| 2023 |
Powers AS, Khan A, Paggi JM, Latorraca NR, Souza S, Di Salvo J, Lu J, Soisson SM, Johnston JM, Weinglass AB, Dror RO. A non-canonical mechanism of GPCR activation. Biorxiv : the Preprint Server For Biology. PMID 37645874 DOI: 10.1101/2023.08.14.553154 |
0.284 |
|
| 2017 |
Komolov KE, Du Y, Duc NM, Betz RM, Rodrigues JPGLM, Leib RD, Patra D, Skiniotis G, Adams CM, Dror RO, Chung KY, Kobilka BK, Benovic JL. Structural and Functional Analysis of a β2-Adrenergic Receptor Complex with GRK5. Cell. 169: 407-421.e16. PMID 28431242 DOI: 10.1016/J.Cell.2017.03.047 |
0.283 |
|
| 2017 |
Liu X, Ahn S, Kahsai AW, Meng KC, Latorraca NR, Pani B, Venkatakrishnan AJ, Masoudi A, Weis WI, Dror RO, Chen X, Lefkowitz RJ, Kobilka BK. Mechanism of intracellular allosteric β2AR antagonist revealed by X-ray crystal structure. Nature. PMID 28813418 DOI: 10.1038/Nature23652 |
0.279 |
|
| 2018 |
Latorraca NR, Wang JK, Bauer B, Townshend RJL, Hollingsworth SA, Olivieri JE, Xu HE, Sommer ME, Dror RO. Molecular mechanism of GPCR-mediated arrestin activation. Nature. PMID 29720655 DOI: 10.1038/S41586-018-0077-3 |
0.278 |
|
| 2011 |
Dror RO, Arlow DH, Maragakis P, Mildorf TJ, Pan AC, Xu H, Borhani DW, Shaw DE. Activation mechanism of the β2-adrenergic receptor. Proceedings of the National Academy of Sciences of the United States of America. 108: 18684-9. PMID 22031696 DOI: 10.1073/Pnas.1110499108 |
0.277 |
|
| 2023 |
El Daibani A, Paggi JM, Kim K, Laloudakis YD, Popov P, Bernhard SM, Krumm BE, Olsen RHJ, Diberto J, Carroll FI, Katritch V, Wünsch B, Dror RO, Che T. Molecular mechanism of biased signaling at the kappa opioid receptor. Nature Communications. 14: 1338. PMID 36906681 DOI: 10.1038/s41467-023-37041-7 |
0.275 |
|
| 2012 |
Zhang C, Srinivasan Y, Arlow DH, Fung JJ, Palmer D, Zheng Y, Green HF, Pandey A, Dror RO, Shaw DE, Weis WI, Coughlin SR, Kobilka BK. High-resolution crystal structure of human protease-activated receptor 1. Nature. 492: 387-92. PMID 23222541 DOI: 10.1038/Nature11701 |
0.27 |
|
| 2018 |
Koehl A, Hu H, Maeda S, Zhang Y, Qu Q, Paggi JM, Latorraca NR, Hilger D, Dawson R, Matile H, Schertler GFX, Granier S, Weis WI, Dror RO, Manglik A, et al. Structure of the µ-opioid receptor-G protein complex. Nature. PMID 29899455 DOI: 10.1038/S41586-018-0219-7 |
0.27 |
|
| 2020 |
Suomivuori CM, Latorraca NR, Wingler LM, Eismann S, King MC, Kleinhenz ALW, Skiba MA, Staus DP, Kruse AC, Lefkowitz RJ, Dror RO. Molecular mechanism of biased signaling in a prototypical G protein-coupled receptor. Science (New York, N.Y.). 367: 881-887. PMID 32079767 DOI: 10.1126/Science.Aaz0326 |
0.269 |
|
| 2020 |
Wingler LM, Skiba MA, McMahon C, Staus DP, Kleinhenz ALW, Suomivuori CM, Latorraca NR, Dror RO, Lefkowitz RJ, Kruse AC. Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR. Science (New York, N.Y.). 367: 888-892. PMID 32079768 DOI: 10.1126/Science.Aay9813 |
0.268 |
|
| 2013 |
Nygaard R, Zou Y, Dror RO, Mildorf TJ, Arlow DH, Manglik A, Pan AC, Liu CW, Fung JJ, Bokoch MP, Thian FS, Kobilka TS, Shaw DE, Mueller L, Prosser RS, et al. The dynamic process of β(2)-adrenergic receptor activation. Cell. 152: 532-42. PMID 23374348 DOI: 10.1016/J.Cell.2013.01.008 |
0.268 |
|
| 2024 |
Hoppe N, Harrison S, Hwang SH, Chen Z, Karelina M, Deshpande I, Suomivuori CM, Palicharla VR, Berry SP, Tschaikner P, Regele D, Covey DF, Stefan E, Marks DS, Reiter JF, ... Dror RO, et al. GPR161 structure uncovers the redundant role of sterol-regulated ciliary cAMP signaling in the Hedgehog pathway. Nature Structural & Molecular Biology. PMID 38326651 DOI: 10.1038/s41594-024-01223-8 |
0.268 |
|
| 2020 |
Jones EM, Lubock NB, Venkatakrishnan AJ, Wang J, Tseng AM, Paggi JM, Latorraca NR, Cancilla D, Satyadi M, Davis JE, Babu MM, Dror RO, Kosuri S. Structural and functional characterization of G protein-coupled receptors with deep mutational scanning. Elife. 9. PMID 33084570 DOI: 10.7554/eLife.54895 |
0.268 |
|
| 2013 |
Dror RO, Green HF, Valant C, Borhani DW, Valcourt JR, Pan AC, Arlow DH, Canals M, Lane JR, Rahmani R, Baell JB, Sexton PM, Christopoulos A, Shaw DE. Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs. Nature. 503: 295-9. PMID 24121438 DOI: 10.1038/Nature12595 |
0.265 |
|
| 2018 |
Van Eps N, Altenbach C, Caro LN, Latorraca NR, Hollingsworth SA, Dror RO, Ernst OP, Hubbell WL. G- and G-coupled GPCRs show different modes of G-protein binding. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463720 DOI: 10.1073/Pnas.1721896115 |
0.265 |
|
| 2012 |
Kruse AC, Hu J, Pan AC, Arlow DH, Rosenbaum DM, Rosemond E, Green HF, Liu T, Chae PS, Dror RO, Shaw DE, Weis WI, Wess J, Kobilka BK. Structure and dynamics of the M3 muscarinic acetylcholine receptor. Nature. 482: 552-6. PMID 22358844 DOI: 10.1038/Nature10867 |
0.264 |
|
| 2014 |
Dror RO, Green HF, Valant C, Borhani DW, Valcourt JR, Pan AC, Arlow DH, Canals M, Lane JR, Rahmani R, Baell JB, Sexton PM, Christopoulos A, Shaw DE. Structural Basis for Modulation of a GPCR by Allosteric Drugs Biophysical Journal. 106: 100a. DOI: 10.1016/J.Bpj.2013.11.626 |
0.262 |
|
| 2018 |
Schmidt HR, Betz RM, Dror RO, Kruse AC. Structural basis for σ receptor ligand recognition. Nature Structural & Molecular Biology. 25: 981-987. PMID 30291362 DOI: 10.1038/s41594-018-0137-2 |
0.259 |
|
| 2023 |
Hoppe N, Harrison S, Hwang SH, Chen Z, Karelina M, Deshpande I, Suomivuori CM, Palicharla VR, Berry SP, Tschaikner P, Regele D, Covey DF, Stefan E, Marks DS, Reiter J, ... Dror RO, et al. GPR161 structure uncovers the redundant role of sterol-regulated ciliary cAMP signaling in the Hedgehog pathway. Biorxiv : the Preprint Server For Biology. PMID 37292845 DOI: 10.1101/2023.05.23.540554 |
0.259 |
|
| 2017 |
Wacker D, Wang S, McCorvy JD, Betz RM, Venkatakrishnan AJ, Levit A, Lansu K, Schools ZL, Che T, Nichols DE, Shoichet BK, Dror RO, Roth BL. Crystal Structure of an LSD-Bound Human Serotonin Receptor. Cell. 168: 377-389.e12. PMID 28129538 DOI: 10.1016/J.Cell.2016.12.033 |
0.257 |
|
| 2016 |
Guo D, Pan AC, Dror RO, Mocking T, Liu R, Heitman L, Shaw DE, IJzerman AP. Molecular basis of ligand dissociation from the adenosine A2A receptor. Molecular Pharmacology. PMID 26873858 DOI: 10.1124/Mol.115.102657 |
0.255 |
|
| 2016 |
Latorraca NR, Venkatakrishnan AJ, Dror RO. GPCR Dynamics: Structures in Motion. Chemical Reviews. PMID 27622975 DOI: 10.1021/acs.chemrev.6b00177 |
0.252 |
|
| 2019 |
Wingler LM, Elgeti M, Hilger D, Latorraca NR, Lerch MT, Staus DP, Dror RO, Kobilka BK, Hubbell WL, Lefkowitz RJ. Angiotensin Analogs with Divergent Bias Stabilize Distinct Receptor Conformations. Cell. PMID 30639099 DOI: 10.1016/J.Cell.2018.12.005 |
0.252 |
|
| 2019 |
Hollingsworth SA, Kelly B, Valant C, Michaelis JA, Mastromihalis O, Thompson G, Venkatakrishnan AJ, Hertig S, Scammells PJ, Sexton PM, Felder CC, Christopoulos A, Dror RO. Cryptic pocket formation underlies allosteric modulator selectivity at muscarinic GPCRs. Nature Communications. 10: 3289. PMID 31337749 DOI: 10.1038/s41467-019-11062-7 |
0.25 |
|
| 2018 |
Masureel M, Zou Y, Picard LP, van der Westhuizen E, Mahoney JP, Rodrigues JPGLM, Mildorf TJ, Dror RO, Shaw DE, Bouvier M, Pardon E, Steyaert J, Sunahara RK, Weis WI, Zhang C, et al. Structural insights into binding specificity, efficacy and bias of a βAR partial agonist. Nature Chemical Biology. 14: 1059-1066. PMID 30327561 DOI: 10.1038/S41589-018-0145-X |
0.249 |
|
| 2014 |
Ranganathan A, Dror RO, Carlsson J. Insights into the role of Asp79(2.50) in β2 adrenergic receptor activation from molecular dynamics simulations. Biochemistry. 53: 7283-96. PMID 25347607 DOI: 10.1021/Bi5008723 |
0.248 |
|
| 2019 |
Deshpande I, Liang J, Hedeen D, Roberts KJ, Zhang Y, Ha B, Latorraca NR, Faust B, Dror RO, Beachy PA, Myers BR, Manglik A. Smoothened stimulation by membrane sterols drives Hedgehog pathway activity. Nature. PMID 31263273 DOI: 10.2210/Pdb6O3C/Pdb |
0.247 |
|
| 2018 |
Bokoch MP, Jo H, Valcourt JR, Srinivasan Y, Pan AC, Capponi S, Grabe M, Dror RO, Shaw DE, DeGrado WF, Coughlin SR. Entry from the lipid bilayer: a possible pathway for inhibition of a peptide G protein-coupled receptor by a lipophilic small molecule. Biochemistry. PMID 30102523 DOI: 10.1021/Acs.Biochem.8B00577 |
0.247 |
|
| 2011 |
Dror RO, Pan AC, Arlow DH, Borhani DW, Maragakis P, Shan Y, Xu H, Shaw DE. Pathway and mechanism of drug binding to G-protein-coupled receptors. Proceedings of the National Academy of Sciences of the United States of America. 108: 13118-23. PMID 21778406 DOI: 10.1016/J.Bpj.2011.11.2241 |
0.247 |
|
| 2023 |
Powers AS, Pham V, Burger WAC, Thompson G, Laloudakis Y, Sexton PM, Paul SM, Christopoulos A, Thal DM, Felder CC, Valant C, Dror RO. Structural basis of efficacy-driven ligand selectivity at GPCRs. Nature Chemical Biology. PMID 36782010 DOI: 10.1038/s41589-022-01247-5 |
0.246 |
|
| 2015 |
Burg JS, Ingram JR, Venkatakrishnan AJ, Jude KM, Dukkipati A, Feinberg EN, Angelini A, Waghray D, Dror RO, Ploegh HL, Garcia KC. Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor. Science (New York, N.Y.). 347: 1113-7. PMID 25745166 DOI: 10.1126/Science.Aaa5026 |
0.245 |
|
| 2023 |
Xu X, Shonberg J, Kaindl J, Clark MJ, Stößel A, Maul L, Mayer D, Hübner H, Hirata K, Venkatakrishnan AJ, Dror RO, Kobilka BK, Sunahara RK, Liu X, Gmeiner P. Constrained catecholamines gain βAR selectivity through allosteric effects on pocket dynamics. Nature Communications. 14: 2138. PMID 37059717 DOI: 10.1038/s41467-023-37808-y |
0.236 |
|
| 2018 |
Venkatakrishnan A, Dror R. Spatially Constrained Water Molecules are Conserved in GPCR Activation Biophysical Journal. 114: 236a. DOI: 10.1016/J.BPJ.2017.11.1312 |
0.233 |
|
| 2017 |
McCorvy JD, Butler KV, Kelly B, Rechsteiner K, Karpiak J, Betz RM, Kormos BL, Shoichet BK, Dror RO, Jin J, Roth BL. Structure-inspired design of β-arrestin-biased ligands for aminergic GPCRs. Nature Chemical Biology. PMID 29227473 DOI: 10.1038/Nchembio.2527 |
0.23 |
|
| 2020 |
Latorraca NR, Masureel M, Hollingsworth SA, Heydenreich FM, Suomivuori CM, Brinton C, Townshend RJL, Bouvier M, Kobilka BK, Dror RO. How GPCR Phosphorylation Patterns Orchestrate Arrestin-Mediated Signaling. Cell. PMID 33296703 DOI: 10.1016/j.cell.2020.11.014 |
0.23 |
|
| 2015 |
Dror RO, Mildorf TJ, Hilger D, Manglik A, Borhani DW, Arlow DH, Philippsen A, Villanueva N, Yang Z, Lerch MT, Hubbell WL, Kobilka BK, Sunahara RK, Shaw DE. SIGNAL TRANSDUCTION. Structural basis for nucleotide exchange in heterotrimeric G proteins. Science (New York, N.Y.). 348: 1361-5. PMID 26089515 DOI: 10.1126/Science.Aaa5264 |
0.226 |
|
| 2021 |
Harris JA, Faust B, Gondin AB, Dämgen MA, Suomivuori CM, Veldhuis NA, Cheng Y, Dror RO, Thal DM, Manglik A. Selective G protein signaling driven by substance P-neurokinin receptor dynamics. Nature Chemical Biology. PMID 34711980 DOI: 10.1038/s41589-021-00890-8 |
0.222 |
|
| 2017 |
Wang S, Wacker D, Levit A, Che T, Betz RM, McCorvy JD, Venkatakrishnan AJ, Huang XP, Dror RO, Shoichet BK, Roth BL. D4 dopamine receptor high-resolution structures enable the discovery of selective agonists. Science (New York, N.Y.). 358: 381-386. PMID 29051383 DOI: 10.1126/Science.Aan5468 |
0.221 |
|
| 2017 |
Zhou XE, He Y, de Waal PW, Gao X, Kang Y, Van Eps N, Yin Y, Pal K, Goswami D, White TA, Barty A, Latorraca NR, Chapman HN, Hubbell WL, Dror RO, et al. Identification of Phosphorylation Codes for Arrestin Recruitment by G Protein-Coupled Receptors. Cell. 170: 457-469.e13. PMID 28753425 DOI: 10.1016/J.Cell.2017.07.002 |
0.22 |
|
| 2019 |
Venkatakrishnan AJ, Ma AK, Fonseca R, Latorraca NR, Kelly B, Betz RM, Asawa C, Kobilka BK, Dror RO. Diverse GPCRs exhibit conserved water networks for stabilization and activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30728297 DOI: 10.1073/Pnas.1809251116 |
0.22 |
|
| 2013 |
Kim TH, Chung KY, Manglik A, Hansen AL, Dror RO, Mildorf TJ, Shaw DE, Kobilka BK, Prosser RS. The role of ligands on the equilibria between functional states of a G protein-coupled receptor. Journal of the American Chemical Society. 135: 9465-74. PMID 23721409 DOI: 10.1021/Ja404305K |
0.208 |
|
| 2020 |
Komolov KE, Sulon SM, Bhardwaj A, van Keulen SC, Duc NM, Laurinavichyute DK, Lou HJ, Turk BE, Chung KY, Dror RO, Benovic JL. Structure of a GRK5-Calmodulin Complex Reveals Molecular Mechanism of GRK Activation and Substrate Targeting. Molecular Cell. PMID 33321095 DOI: 10.1016/j.molcel.2020.11.026 |
0.207 |
|
| 2019 |
Chew TA, Orlando BJ, Zhang J, Latorraca NR, Wang A, Hollingsworth SA, Chen DH, Dror RO, Liao M, Feng L. Structure and mechanism of the cation-chloride cotransporter NKCC1. Nature. PMID 31367042 DOI: 10.2210/Pdb6Npk/Pdb |
0.204 |
|
| 2017 |
Latorraca NR, Fastman NM, Venkatakrishnan AJ, Frommer WB, Dror RO, Feng L. Mechanism of Substrate Translocation in an Alternating Access Transporter. Cell. 169: 96-107.e12. PMID 28340354 DOI: 10.1016/J.Cell.2017.03.010 |
0.204 |
|
| 2013 |
Arkhipov A, Shan Y, Kim ET, Dror RO, Shaw DE. Her2 activation mechanism reflects evolutionary preservation of asymmetric ectodomain dimers in the human EGFR family. Elife. 2: e00708. PMID 23878723 DOI: 10.7554/Elife.00708 |
0.199 |
|
| 2011 |
Shan Y, Kim ET, Eastwood MP, Dror RO, Seeliger MA, Shaw DE. How does a drug molecule find its target binding site? Journal of the American Chemical Society. 133: 9181-3. PMID 21545110 DOI: 10.1021/Ja202726Y |
0.198 |
|
| 2023 |
Karelina M, Noh JJ, Dror RO. How accurately can one predict drug binding modes using AlphaFold models? Elife. 12. PMID 38131311 DOI: 10.7554/eLife.89386 |
0.195 |
|
| 2023 |
Burger WAC, Pham V, Vuckovic Z, Powers AS, Mobbs JI, Laloudakis Y, Glukhova A, Wootten D, Tobin AB, Sexton PM, Paul SM, Felder CC, Danev R, Dror RO, Christopoulos A, et al. Xanomeline displays concomitant orthosteric and allosteric binding modes at the M mAChR. Nature Communications. 14: 5440. PMID 37673901 DOI: 10.1038/s41467-023-41199-5 |
0.195 |
|
| 1996 |
Dror R, Ganguli S, Strichartz RS. A Search for Best Constants in the Hardy-Littlewood Maximal Theorem Journal of Fourier Analysis and Applications. 2: x6-486. DOI: 10.1007/S00041-001-4039-Y |
0.194 |
|
| 2013 |
Pan AC, Borhani DW, Dror RO, Shaw DE. Molecular determinants of drug-receptor binding kinetics. Drug Discovery Today. 18: 667-73. PMID 23454741 DOI: 10.1016/J.Drudis.2013.02.007 |
0.193 |
|
| 2019 |
Betz R, Dror RO. How effectively can adaptive sampling methods capture spontaneous ligand binding? Journal of Chemical Theory and Computation. PMID 30645108 DOI: 10.1021/acs.jctc.8b00913 |
0.193 |
|
| 2016 |
Hertig S, Latorraca NR, Dror RO. Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations. Plos Computational Biology. 12: e1004746. PMID 27285999 DOI: 10.1371/journal.pcbi.1004746 |
0.191 |
|
| 2009 |
Dror RO, Arlow DH, Borhani DW, Jensen MØ, Piana S, Shaw DE. Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations. Proceedings of the National Academy of Sciences of the United States of America. 106: 4689-94. PMID 19258456 DOI: 10.1016/J.Bpj.2008.12.1964 |
0.189 |
|
| 2022 |
Cao C, Barros-Álvarez X, Zhang S, Kim K, Dämgen MA, Panova O, Suomivuori CM, Fay JF, Zhong X, Krumm BE, Gumpper RH, Seven AB, Robertson MJ, Krogan NJ, Hüttenhain R, ... ... Dror RO, et al. Signaling snapshots of a serotonin receptor activated by the prototypical psychedelic LSD. Neuron. PMID 36087581 DOI: 10.1016/j.neuron.2022.08.006 |
0.182 |
|
| 2016 |
Zimmerman B, Kelly B, McMillan BJ, Seegar TC, Dror RO, Kruse AC, Blacklow SC. Crystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket. Cell. 167: 1041-1051.e11. PMID 27881302 DOI: 10.1016/J.Cell.2016.09.056 |
0.178 |
|
| 2011 |
Lindorff-Larsen K, Piana S, Dror RO, Shaw DE. How fast-folding proteins fold. Science (New York, N.Y.). 334: 517-20. PMID 22034434 DOI: 10.1126/science.1208351 |
0.177 |
|
| 2022 |
Zhang K, Horikoshi N, Li S, Powers AS, Hameedi MA, Pintilie GD, Chae HD, Khan YA, Suomivuori CM, Dror RO, Sakamoto KM, Chiu W, Wakatsuki S. Cryo-EM, Protein Engineering, and Simulation Enable the Development of Peptide Therapeutics against Acute Myeloid Leukemia. Acs Central Science. 8: 214-222. PMID 35233453 DOI: 10.1021/acscentsci.1c01090 |
0.174 |
|
| 2023 |
Powers AS, Pham V, Burger WAC, Thompson G, Laloudakis Y, Barnes NW, Sexton PM, Paul SM, Christopoulos A, Thal DM, Felder CC, Valant C, Dror RO. Author Correction: Structural basis of efficacy-driven ligand selectivity at GPCRs. Nature Chemical Biology. PMID 36879062 DOI: 10.1038/s41589-023-01297-3 |
0.174 |
|
| 2009 |
Dror RO, Jensen MØ, Shaw DE. Elucidating membrane protein function through long-timescale molecular dynamics simulation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 2340-2. PMID 19965181 DOI: 10.1109/IEMBS.2009.5335057 |
0.169 |
|
| 2023 |
Powers AS, Yu HH, Suriana P, Koodli RV, Lu T, Paggi JM, Dror RO. Geometric Deep Learning for Structure-Based Ligand Design. Acs Central Science. 9: 2257-2267. PMID 38161364 DOI: 10.1021/acscentsci.3c00572 |
0.165 |
|
| 2010 |
Shaw DE, Maragakis P, Lindorff-Larsen K, Piana S, Dror RO, Eastwood MP, Bank JA, Jumper JM, Salmon JK, Shan Y, Wriggers W. Atomic-level characterization of the structural dynamics of proteins. Science (New York, N.Y.). 330: 341-6. PMID 20947758 DOI: 10.1126/Science.1187409 |
0.163 |
|
| 2013 |
Dror R. How Drugs Bind and Control their Targets: Characterizing GPCR Signaling through Long-Timescale Simulation Catecholamine Research in the 21st Century: Abstracts and Graphical Abstracts, 10th International Catecholamine Symposium, 2012. 87. DOI: 10.1016/B978-0-12-800044-1.00073-8 |
0.162 |
|
| 2021 |
Paggi JM, Belk JA, Hollingsworth SA, Villanueva N, Powers AS, Clark MJ, Chemparathy AG, Tynan JE, Lau TK, Sunahara RK, Dror RO. Leveraging nonstructural data to predict structures and affinities of protein-ligand complexes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34921117 DOI: 10.1073/pnas.2112621118 |
0.162 |
|
| 2023 |
Suriana P, Dror RO. Enhancing Ligand Pose Sampling for Molecular Docking. Arxiv. PMID 38076510 |
0.162 |
|
| 2012 |
Raval A, Piana S, Eastwood MP, Dror RO, Shaw DE. Refinement of protein structure homology models via long, all-atom molecular dynamics simulations. Proteins. 80: 2071-9. PMID 22513870 DOI: 10.1002/Prot.24098 |
0.162 |
|
| 2009 |
Wriggers W, Stafford KA, Shan Y, Piana S, Maragakis P, Lindorff-Larsen K, Miller PJ, Gullingsrud J, Rendleman CA, Eastwood MP, Dror RO, Shaw DE. Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 5: 2595-605. PMID 26631775 DOI: 10.1021/Ct900229U |
0.16 |
|
| 2018 |
Masureel M, Zou Y, Picard LP, van der Westhuizen E, Mahoney JP, Rodrigues JPGLM, Mildorf TJ, Dror RO, Shaw DE, Bouvier M, Pardon E, Steyaert J, Sunahara RK, Weis WI, Zhang C, et al. Publisher Correction: Structural insights into binding specificity, efficacy and bias of a βAR partial agonist. Nature Chemical Biology. PMID 30504785 DOI: 10.1038/S41589-018-0182-5 |
0.158 |
|
| 2012 |
Piana S, Lindorff-Larsen K, Dirks RM, Salmon JK, Dror RO, Shaw DE. Evaluating the effects of cutoffs and treatment of long-range electrostatics in protein folding simulations. Plos One. 7: e39918. PMID 22768169 DOI: 10.1371/Journal.Pone.0039918 |
0.157 |
|
| 2018 |
Hollingsworth SA, Dror RO. Molecular Dynamics Simulation for All. Neuron. 99: 1129-1143. PMID 30236283 DOI: 10.1016/j.neuron.2018.08.011 |
0.155 |
|
| 2012 |
Dror RO, Dirks RM, Grossman JP, Xu H, Shaw DE. Biomolecular simulation: a computational microscope for molecular biology. Annual Review of Biophysics. 41: 429-52. PMID 22577825 DOI: 10.1146/Annurev-Biophys-042910-155245 |
0.152 |
|
| 2018 |
Eichel K, Jullié D, Barsi-Rhyne B, Latorraca NR, Masureel M, Sibarita JB, Dror RO, von Zastrow M. Catalytic activation of β-arrestin by GPCRs. Nature. PMID 29720660 DOI: 10.1038/S41586-018-0079-1 |
0.151 |
|
| 2009 |
Wriggers W, Stafford KA, Shan Y, Piana-Agostinetti S, Maragakis P, Lindorff-Larsen K, Miller PJ, Eastwood MP, Dror RO, Shaw DE. Automated Event Detection and Activity Monitoring in Long Time-Scale Molecular Dynamics Biophysical Journal. 96: 364a-365a. DOI: 10.1016/J.Bpj.2008.12.1962 |
0.147 |
|
| 2012 |
Lindorff-Larsen K, Maragakis P, Piana S, Eastwood MP, Dror RO, Shaw DE. Systematic validation of protein force fields against experimental data. Plos One. 7: e32131. PMID 22384157 DOI: 10.1371/journal.pone.0032131 |
0.146 |
|
| 2023 |
Xu M, Neelands T, Powers AS, Liu Y, Miller SD, Pintilie G, Du Bois J, Dror RO, Chiu W, Maduke M. CryoEM structures of the human CLC-2 voltage gated chloride channel reveal a ball and chain gating mechanism. Biorxiv : the Preprint Server For Biology. PMID 37645939 DOI: 10.1101/2023.08.13.553136 |
0.145 |
|
| 2009 |
Shan Y, Seeliger MA, Eastwood MP, Frank F, Xu H, Jensen MØ, Dror RO, Kuriyan J, Shaw DE. A conserved protonation-dependent switch controls drug binding in the Abl kinase. Proceedings of the National Academy of Sciences of the United States of America. 106: 139-44. PMID 19109437 DOI: 10.1073/Pnas.0811223106 |
0.143 |
|
| 2022 |
Faust B, Billesbølle CB, Suomivuori CM, Singh I, Zhang K, Hoppe N, Pinto AFM, Diedrich JK, Muftuoglu Y, Szkudlinski MW, Saghatelian A, Dror RO, Cheng Y, Manglik A. Autoantibody mimicry of hormone action at the thyrotropin receptor. Nature. PMID 35940205 DOI: 10.1038/s41586-022-05159-1 |
0.143 |
|
| 2024 |
Xu M, Neelands T, Powers AS, Liu Y, Miller SD, Pintilie GD, Bois JD, Dror RO, Chiu W, Maduke M. CryoEM structures of the human CLC-2 voltage-gated chloride channel reveal a ball-and-chain gating mechanism. Elife. 12. PMID 38345841 DOI: 10.7554/eLife.90648 |
0.136 |
|
| 2009 |
Klepeis JL, Lindorff-Larsen K, Dror RO, Shaw DE. Long-timescale molecular dynamics simulations of protein structure and function. Current Opinion in Structural Biology. 19: 120-7. PMID 19361980 DOI: 10.1016/j.sbi.2009.03.004 |
0.134 |
|
| 2007 |
Arkin IT, Xu H, Jensen MØ, Arbely E, Bennett ER, Bowers KJ, Chow E, Dror RO, Eastwood MP, Flitman-Tene R, Gregersen BA, Klepeis JL, Kolossváry I, Shan Y, Shaw DE. Mechanism of Na+/H+ antiporting. Science (New York, N.Y.). 317: 799-803. PMID 17690293 DOI: 10.1126/Science.1142824 |
0.133 |
|
| 2008 |
Maragakis P, Lindorff-Larsen K, Eastwood MP, Dror RO, Klepeis JL, Arkin IT, Jensen MØ, Xu H, Trbovic N, Friesner RA, Iii AG, Shaw DE. Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins. The Journal of Physical Chemistry. B. 112: 6155-8. PMID 18311962 DOI: 10.1021/Jp077018H |
0.133 |
|
| 2020 |
Eismann S, Townshend RJL, Thomas N, Jagota M, Jing B, Dror RO. Hierarchical,rotation-equivariant neural networks to select structural models of protein complexes. Proteins. PMID 33289162 DOI: 10.1002/prot.26033 |
0.132 |
|
| 2009 |
Piana-Agostinetti S, Lindorff-Larsen K, Maragakis P, Eastwood MP, Dror RO, Shaw DE. Improving Molecular Mechanics Force Fields By Comparison Of Microsecond Simulations With Nmr Experiments Biophysical Journal. 96: 406a. DOI: 10.1016/J.Bpj.2008.12.2066 |
0.13 |
|
| 2010 |
Jensen MØ, Borhani DW, Lindorff-Larsen K, Maragakis P, Jogini V, Eastwood MP, Dror RO, Shaw DE. Principles of conduction and hydrophobic gating in K+ channels. Proceedings of the National Academy of Sciences of the United States of America. 107: 5833-8. PMID 20231479 DOI: 10.1073/Pnas.0911691107 |
0.127 |
|
| 2008 |
Jensen MØ, Dror RO, Xu H, Borhani DW, Arkin IT, Eastwood MP, Shaw DE. Dynamic control of slow water transport by aquaporin 0: implications for hydration and junction stability in the eye lens. Proceedings of the National Academy of Sciences of the United States of America. 105: 14430-5. PMID 18787121 DOI: 10.1073/Pnas.0802401105 |
0.125 |
|
| 2010 |
Eastwood MP, Stafford KA, Lippert RA, Jensen MØ, Maragakis P, Predescu C, Dror RO, Shaw DE. Equipartition and the Calculation of Temperature in Biomolecular Simulations. Journal of Chemical Theory and Computation. 6: 2045-58. PMID 26615934 DOI: 10.1021/ct9002916 |
0.123 |
|
| 2021 |
Sanborn AL, Yeh BT, Feigerle JT, Hao CV, Townshend RJL, Lieberman-Aiden E, Dror RO, Kornberg RD. Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator. Elife. 10. PMID 33904398 DOI: 10.7554/eLife.68068 |
0.122 |
|
| 2001 |
Dror RO, O'Carroll DC, Laughlin SB. Accuracy of velocity estimation by Reichardt correlators. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 18: 241-52. PMID 11205969 |
0.121 |
|
| 2023 |
Eismann S, Suriana P, Jing B, Townshend RJL, Dror RO. Protein model quality assessment using rotation-equivariant transformations on point clouds. Proteins. PMID 37158708 DOI: 10.1002/prot.26494 |
0.121 |
|
| 2014 |
Shan Y, Kim E, Eastwood MP, Dror RO, Seeliger MA, Shaw DE. Correction to How Does a Drug Molecule Find its Target Binding Site? Journal of the American Chemical Society. 136: 3320-3320. DOI: 10.1021/Ja500545U |
0.116 |
|
| 2009 |
Jensen M, Borhani DW, Dror RO, Eastwood MP, Lindorff-Larsen K, Maragakis P, Shaw DE. Permeation And Conformational Changes Of The Pore Domain Of The Kv1.2 Potassium Channel Biophysical Journal. 96: 176a. DOI: 10.1016/J.Bpj.2008.12.817 |
0.116 |
|
| 2020 |
Latorraca NR, Dror RO. Determining How GPCR Phosphorylation Patterns Affect Arrestin-Mediated Signaling Biophysical Journal. 118: 319a. DOI: 10.1016/j.bpj.2019.11.1797 |
0.107 |
|
| 2012 |
Shan Y, Eastwood MP, Zhang X, Kim ET, Arkhipov A, Dror RO, Jumper J, Kuriyan J, Shaw DE. Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization. Cell. 149: 860-70. PMID 22579287 DOI: 10.1016/J.Cell.2012.02.063 |
0.104 |
|
| 2015 |
Fan Z, Dror RO, Mildorf TJ, Piana S, Shaw DE. Identifying localized changes in large systems: Change-point detection for biomolecular simulations. Proceedings of the National Academy of Sciences of the United States of America. 112: 7454-9. PMID 26025225 DOI: 10.1073/Pnas.1415846112 |
0.104 |
|
| 2020 |
Billesbølle CB, Azumaya CM, Kretsch RC, Powers AS, Gonen S, Schneider S, Arvedson T, Dror RO, Cheng Y, Manglik A. Structure of hepcidin-bound ferroportin reveals iron homeostatic mechanisms. Nature. PMID 32814342 DOI: 10.1038/S41586-020-2668-Z |
0.102 |
|
| 2021 |
Townshend RJL, Eismann S, Watkins AM, Rangan R, Karelina M, Das R, Dror RO. Geometric deep learning of RNA structure. Science (New York, N.Y.). 373: 1047-1051. PMID 34446608 DOI: 10.1126/science.abe5650 |
0.102 |
|
| 2012 |
Predescu C, Lippert RA, Eastwood MP, Ierardi D, Xu H, Jensen M, Bowers KJ, Gullingsrud J, Rendleman CA, Dror RO, Shaw DE. Computationally efficient molecular dynamics integrators with improved sampling accuracy Molecular Physics. 110: 967-983. DOI: 10.1080/00268976.2012.681311 |
0.097 |
|
| 2023 |
Xu X, Shonberg J, Kaindl J, Clark MJ, Stößel A, Maul L, Mayer D, Hübner H, Hirata K, Venkatakrishnan AJ, Dror RO, Kobilka BK, Sunahara RK, Liu X, Gmeiner P. Author Correction: Constrained catecholamines gain βAR selectivity through allosteric effects on pocket dynamics. Nature Communications. 14: 2992. PMID 37225685 DOI: 10.1038/s41467-023-38820-y |
0.097 |
|
| 2010 |
Lindorff-Larsen K, Piana S, Palmo K, Maragakis P, Klepeis JL, Dror RO, Shaw DE. Improved side-chain torsion potentials for the Amber ff99SB protein force field. Proteins. 78: 1950-8. PMID 20408171 DOI: 10.1002/prot.22711 |
0.095 |
|
| 1990 |
Heffetz D, Bushkin I, Dror R, Zick Y. The insulinomimetic agents H2O2 and vanadate stimulate protein tyrosine phosphorylation in intact cells. The Journal of Biological Chemistry. 265: 2896-902. PMID 2154464 |
0.095 |
|
| 2010 |
Dror RO, Jensen MØ, Borhani DW, Shaw DE. Exploring atomic resolution physiology on a femtosecond to millisecond timescale using molecular dynamics simulations. The Journal of General Physiology. 135: 555-62. PMID 20513757 DOI: 10.1085/Jgp.200910373 |
0.095 |
|
| 2007 |
Lippert RA, Bowers KJ, Dror RO, Eastwood MP, Gregersen BA, Klepeis JL, Kolossvary I, Shaw DE. A common, avoidable source of error in molecular dynamics integrators. The Journal of Chemical Physics. 126: 046101. PMID 17286520 DOI: 10.1063/1.2431176 |
0.093 |
|
| 1991 |
Volberg T, Geiger B, Dror R, Zick Y. Modulation of intercellular adherens-type junctions and tyrosine phosphorylation of their components in RSV-transformed cultured chick lens cells. Cell Regulation. 2: 105-20. PMID 1650581 DOI: 10.1091/Mbc.2.2.105 |
0.092 |
|
| 2021 |
Jagota M, Townshend RJL, Kang LW, Bushnell DA, Dror RO, Kornberg RD, Azubel M. Gold nanoparticles and tilt pairs to assess protein flexibility by cryo-electron microscopy. Ultramicroscopy. 227: 113302. PMID 34062386 DOI: 10.1016/j.ultramic.2021.113302 |
0.092 |
|
| 2008 |
Tu T, Rendleman CA, Borhani DW, Dror RO, Gullingsrud J, Jensen MO, Klepeis JL, Maragakis P, Miller P, Stafford KA, Shaw DE. A scalable parallel framework for analyzing terascale molecular dynamics simulation trajectories 2008 Sc - International Conference For High Performance Computing, Networking, Storage and Analysis, Sc 2008. DOI: 10.1109/SC.2008.5214715 |
0.091 |
|
| 2008 |
Larson RH, Salmon JK, Dror RO, Deneroff MM, Young C, Grossman JP, Shan Y, Klepeis JL, Shaw DE. High-throughput pairwise point interactions in anton, a specialized machine for molecular dynamics simulation Proceedings - International Symposium On High-Performance Computer Architecture. 331-342. DOI: 10.1109/HPCA.2008.4658650 |
0.088 |
|
| 2012 |
Jensen MØ, Jogini V, Borhani DW, Leffler AE, Dror RO, Shaw DE. Mechanism of voltage gating in potassium channels. Science (New York, N.Y.). 336: 229-33. PMID 22499946 DOI: 10.1126/science.1216533 |
0.087 |
|
| 2009 |
Wriggers W, Stafford KA, Shan Y, Piana S, Maragakis P, Lindorff-Larsen K, Miller PJ, Gullingsrud J, Rendleman CA, Eastwood MP, Dror RO, Shaw DE. Automated event detection and activity monitoring in long molecular dynamics simulations Journal of Chemical Theory and Computation. 5: 2595-2605. DOI: 10.1021/ct900229u |
0.085 |
|
| 2010 |
Jensen M, Borhani DW, Lindorff-Larsen K, Dror RO, Shaw DE. Reply to Domene and Furini: Distinguishing knock-on and vacancy diffusion mechanisms Proceedings of the National Academy of Sciences of the United States of America. 107: E129. DOI: 10.1073/Pnas.1008197107 |
0.082 |
|
| 2016 |
Butts JA, Batson B, Chao JC, Deneroff MM, Dror RO, Fenton CH, Forte A, Gagliardo J, Gill G, Greskamp B, Grossman JP, Ho CR, Kuskin JS, Larson RH, Layman T, et al. The ANTON 2 chip a second-generation ASIC for molecular dynamics 2014 Ieee Hot Chips 26 Symposium, Hcs 2014. DOI: 10.1109/HOTCHIPS.2014.7478807 |
0.081 |
|
| 2013 |
Lippert RA, Predescu C, Ierardi DJ, Mackenzie KM, Eastwood MP, Dror RO, Shaw DE. Accurate and efficient integration for molecular dynamics simulations at constant temperature and pressure. The Journal of Chemical Physics. 139: 164106. PMID 24182003 DOI: 10.1063/1.4825247 |
0.08 |
|
| 1992 |
Volberg T, Zick Y, Dror R, Sabanay I, Gilon C, Levitzki A, Geiger B. The effect of tyrosine-specific protein phosphorylation on the assembly of adherens-type junctions. The Embo Journal. 11: 1733-42. PMID 1316270 DOI: 10.1002/J.1460-2075.1992.Tb05225.X |
0.08 |
|
| 2009 |
Shenfeld DK, Xu H, Eastwood MP, Dror RO, Shaw DE. Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 046705. PMID 19905480 DOI: 10.1103/Physreve.80.046705 |
0.079 |
|
| 1995 |
Nitzan Y, Dror R, Ladan H, Malik Z, Kimel S, Gottfried V. Structure-activity relationship of porphines for photoinactivation of bacteria. Photochemistry and Photobiology. 62: 342-7. PMID 7480142 |
0.075 |
|
| 2009 |
Shenfeld DK, Xu H, Eastwood MP, Dror RO, Shaw DE. Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 80. DOI: 10.1103/PhysRevE.80.046705 |
0.075 |
|
| 2006 |
Bowers KJ, Dror RO, Shaw DE. The midpoint method for parallelization of particle simulations. The Journal of Chemical Physics. 124: 184109. PMID 16709099 DOI: 10.1063/1.2191489 |
0.073 |
|
| 2023 |
Evans SW, Shi DQ, Chavarha M, Plitt MH, Taxidis J, Madruga B, Fan JL, Hwang FJ, van Keulen SC, Suomivuori CM, Pang MM, Su S, Lee S, Hao YA, Zhang G, ... ... Dror RO, et al. A positively tuned voltage indicator for extended electrical recordings in the brain. Nature Methods. 20: 1104-1113. PMID 37429962 DOI: 10.1038/s41592-023-01913-z |
0.072 |
|
| 2003 |
Dror RO, Murnick JG, Rinaldi NJ, Marinescu VD, Rifkin RM, Young RA. Bayesian estimation of transcript levels using a general model of array measurement noise. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 433-52. PMID 12935337 DOI: 10.1089/10665270360688110 |
0.071 |
|
| 2009 |
Shaw DE, Dror RO, Salmon JK, Grossman JP, MacKenzie KM, Bank JA, Young C, Deneroff MM, Batson B, Bowers KJ, Chow E, Eastwood MP, Ierardi DJ, Klepeis JL, Kuskin JS, et al. Millisecond-scale molecular dynamics simulations on Anton Proceedings of the Conference On High Performance Computing Networking, Storage and Analysis, Sc '09. DOI: 10.1145/1654059.1654099 |
0.071 |
|
| 2007 |
Bowers KJ, Dror RO, Shaw DE. Zonal methods for the parallel execution of range-limited N-body simulations Journal of Computational Physics. 221: 303-329. DOI: 10.1016/J.Jcp.2006.06.014 |
0.07 |
|
| 2008 |
Kuskin JS, Young C, Grossman JP, Batson B, Deneroff MM, Dror RO, Shaw DE. Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulation Proceedings - International Symposium On High-Performance Computer Architecture. 343-354. DOI: 10.1109/HPCA.2008.4658651 |
0.07 |
|
| 2014 |
Shaw DE, Grossman JP, Bank JA, Batson B, Butts JA, Chao JC, Deneroff MM, Dror RO, Even A, Fenton CH, Forte A, Gagliardo J, Gill G, Greskamp B, Ho CR, et al. Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics Supercomputer International Conference For High Performance Computing, Networking, Storage and Analysis, Sc. 2015: 41-53. DOI: 10.1109/SC.2014.9 |
0.07 |
|
| 2009 |
Lerner A, Castro-Sowinski S, Valverde A, Lerner H, Dror R, Okon Y, Burdman S. The Azospirillum brasilense Sp7 noeJ and noeL genes are involved in extracellular polysaccharide biosynthesis. Microbiology (Reading, England). 155: 4058-68. PMID 19762447 DOI: 10.1099/mic.0.031807-0 |
0.069 |
|
| 2013 |
Lindorff-Larsen K, Maragakis P, Piana S, Eastwood MP, Dror RO, Shaw DE. Correction: Systematic validation of protein force fields against experimental data (PLoS ONE) Plos One. 8. DOI: 10.1371/Annotation/8301B5D4-1Ba3-40E7-8Fcd-3E169B967044 |
0.069 |
|
| 2013 |
Scarpazza DP, Ierardi DJ, Lerer AK, Mackenzie KM, Pan AC, Bank JA, Chow E, Dror RO, Grossman JP, Killebrew D, Moraes MA, Predescu C, Salmon JK, Shaw DE. Extending the generality of molecular dynamics simulations on a special-purpose machine Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium, Ipdps 2013. 933-945. DOI: 10.1109/IPDPS.2013.93 |
0.068 |
|
| 2010 |
Dror R, Lederman M, Umezawa K, Barak V, Pe'er J, Chowers I. Characterizing the involvement of the nuclear factor-kappa B (NF kappa B) transcription factor in uveal melanoma. Investigative Ophthalmology & Visual Science. 51: 1811-6. PMID 19892878 DOI: 10.1167/iovs.09-3392 |
0.068 |
|
| 2007 |
Dror R, Sfez B, Goldin ShY, Cashingad A. Etching of photosensitive chalcogenide glasses:experiments and simulations. Optics Express. 15: 12539-47. PMID 19547624 DOI: 10.1364/OE.15.012539 |
0.068 |
|
| 2012 |
Chow E, Klepeis JL, Rendleman CA, Dror RO, Shaw DE. New technologies for molecular dynamics simulations Comprehensive Biophysics. 9: 86-104. DOI: 10.1016/B978-0-12-374920-8.00908-5 |
0.067 |
|
| 2009 |
Appierot G, Lipovsky A, Dror R, Perkas N, Nitzan Y, Lubart R, Gedanken A. Enhanced antibacterial actiwity of nanocrystalline ZnO due to increased ROS-mediated cell injury Advanced Functional Materials. 19: 842-852. DOI: 10.1002/Adfm.200801081 |
0.066 |
|
| 2008 |
Shaw DE, Deneroff MM, Dror RO, Kuskin JS, Larson RH, Salmon JK, Young C, Batson B, Bowers KJ, Chao JC, Eastwood MP, Gagliardo J, Grossman JP, Ho CR, Lerardi DJ, et al. Anton, a special-purpose machine for molecular dynamics simulation Communications of the Acm. 51: 91-97. DOI: 10.1145/1364782.1364802 |
0.066 |
|
| 2008 |
Goldin SY, Cashingad A, Perez A, Dror R, Sfez B. Simulations of and experiments on the holographic lithography fabrication of photonic crystals Optical Materials. 30: 1759-1765. DOI: 10.1016/j.optmat.2007.11.023 |
0.064 |
|
| 2005 |
Shan Y, Klepeis JL, Eastwood MP, Dror RO, Shaw DE. Gaussian split Ewald: A fast Ewald mesh method for molecular simulation. The Journal of Chemical Physics. 122: 54101. PMID 15740304 DOI: 10.1063/1.1839571 |
0.06 |
|
| 2011 |
Dror RO, Grossman JP, MacKenzie KM, Towles B, Chow E, Salmon JK, Young C, Bank JA, Batson B, Deneroff MM, Kuskin JS, Larson RH, Moraes MA, Shaw DE. Overcoming communication latency barriers in massively parallel scientific computation Ieee Micro. 31: 8-19. DOI: 10.1109/Mm.2011.38 |
0.06 |
|
| 1997 |
Canavier CC, Butera RJ, Dror RO, Baxter DA, Clark JW, Byrne JH. Phase response characteristics of model neurons determine which patterns are expressed in a ring circuit model of gait generation. Biological Cybernetics. 77: 367-80. PMID 9433752 DOI: 10.1007/S004220050397 |
0.058 |
|
| 2002 |
Dror RO, Murnick JG, Rinaldi NA. A Bayesian approach to transcript estimation from gene array data: The BEAM technique Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 137-143. |
0.056 |
|
| 2009 |
Dror R, Shimshoni I. Using phyllotaxis for date palm tree 3D reconstruction from a single image Visapp 2009 - Proceedings of the 4th International Conference On Computer Vision Theory and Applications. 2: 288-296. |
0.055 |
|
| 2006 |
Bowers KJ, Chow E, Xu H, Dror RO, Eastwood MP, Gregersen BA, Klepeis JL, Kolossvary I, Moraes MA, Sacerdoti FD, Salmon JK, Shan Y, Shaw DE. Scalable algorithms for molecular dynamics simulations on commodity clusters Proceedings of the 2006 Acm/Ieee Conference On Supercomputing, Sc'06. DOI: 10.1145/1188455.1188544 |
0.055 |
|
| 2007 |
Meir T, Dror R, Yu X, Qian J, Simon I, Pe'er J, Chowers I. Molecular characteristics of liver metastases from uveal melanoma. Investigative Ophthalmology & Visual Science. 48: 4890-6. PMID 17962435 DOI: 10.1167/Iovs.07-0215 |
0.055 |
|
| 2015 |
Fan Z, Dror RO, Mildorf TJ, Piana S, Shaw DE. Identifying localized changes in large systems: Change-point detection for biomolecular simulations Proceedings of the National Academy of Sciences of the United States of America. 112: 1-6. DOI: 10.1073/pnas.1415846112 |
0.054 |
|
| 2008 |
Grossman JP, Salmon JK, Ho CR, Ierardi DJ, Towles B, Batson B, Spengler J, Wang SC, Mueller R, Theobald M, Young C, Gagliardo J, Deneroff MM, Dror RO, Shaw DE. Hierarchical simulation-based verification of anton, a special-purpose parallel machine 26th Ieee International Conference On Computer Design 2008, Iccd. 340-347. DOI: 10.1109/ICCD.2008.4751883 |
0.054 |
|
| 2011 |
Butts JA, Tang PTP, Dror RO, Shaw DE. Radix-8 digit-by-rounding: Achieving high-performance reciprocals, square roots, and reciprocal square roots Proceedings - Symposium On Computer Arithmetic. 149-158. DOI: 10.1109/ARITH.2011.28 |
0.052 |
|
| 2010 |
Eastwood MP, Stafford KA, Lippert RA, Jensen M, Maragakis P, Predescu C, Dror RO, Shaw DE. Equipartition and the calculation of temperature in biomolecular simulations Journal of Chemical Theory and Computation. 6: 2045-2058. DOI: 10.1021/ct9002916 |
0.052 |
|
| 2008 |
Grossman JP, Young C, Bank JA, Mackenzie K, Lerardi DJ, Salmon JK, Dror RO, Shaw DE. Simulation and embedded software development for anton, a parallel machine with heterogeneous multicore ASICs Embedded Systems Week 2008 - Proceedings of the 6th Ieee/Acm/Ifip International Conference On Hardware/Software Codesign and System Synthesis, Codes+Isss 2008. 125-130. DOI: 10.1145/1450135.1450165 |
0.051 |
|
| 2010 |
Bowers KJ, Lippert RA, Dror RO, Shaw DE. Improved twiddle access for fast Fourier transforms Ieee Transactions On Signal Processing. 58: 1122-1130. DOI: 10.1109/Tsp.2009.2035984 |
0.051 |
|
| 2008 |
Ho CR, Theobald M, Deneroff MM, Dror RO, Gagliardo J, Shaw DE. Early formal verification of conditional coverage points to identify intrinsically hard-to-verify logic Proceedings - Design Automation Conference. 268-271. DOI: 10.1109/DAC.2008.4555821 |
0.042 |
|
| 2005 |
Bowers KJ, Dror RO, Shaw DE. Overview of neutral territory methods for the parallel evaluation of pairwise particle interactions Journal of Physics: Conference Series. 16: 300-304. DOI: 10.1088/1742-6596/16/1/041 |
0.041 |
|
| 1999 |
Dror RO, Canavier CC, Butera RJ, Clark JW, Byrne JH. A mathematical criterion based on phase response curves for stability in a ring of coupled oscillators. Biological Cybernetics. 80: 11-23. PMID 20809292 DOI: 10.1007/s004220050501 |
0.041 |
|
| 2011 |
Tang PTP, Butts JA, Dror RO, Shaw DE. Tight certification techniques for digit-by-rounding algorithms with application to a new 1/√x design Proceedings - Symposium On Computer Arithmetic. 159-168. DOI: 10.1109/ARITH.2011.29 |
0.033 |
|
| 2003 |
Avivi S, Nitzan Y, Dror R, Gedanken A. An easy sonochemical route for the encapsulation of tetracycline in bovine serum albumin microspheres. Journal of the American Chemical Society. 125: 15712-3. PMID 14677939 DOI: 10.1021/Ja036834+ |
0.032 |
|
| 1999 |
Ghinsberg RC, Dror R, Nitzan Y. Isolation of Vibrio vulnificus from sea water and sand along the Dan region coast of the Mediterranean. Microbios. 97: 7-17. PMID 10413865 |
0.031 |
|
| 2008 |
Dror R, Malinger G, Ben-Sira L, Lev D, Pick C, Lerman-Sagie T. [Enlargement of the fetal posterior fossa--what is the significance?]. Harefuah. 147: 873-8, 941. PMID 19264007 |
0.03 |
|
| 2009 |
Dror R, Malinger G, Ben-Sira L, Lev D, Pick CG, Lerman-Sagie T. Developmental outcome of children with enlargement of the cisterna magna identified in utero. Journal of Child Neurology. 24: 1486-92. PMID 19240044 DOI: 10.1177/0883073808331358 |
0.027 |
|
| 2013 |
Grossman JP, Kuskin JS, Bank JA, Theobald M, Dror RO, Ierardi DJ, Larson RH, Ben Schafer U, Towles B, Young C, Shaw DE. Hardware support for fine-grained event-driven computation in anton 2 International Conference On Architectural Support For Programming Languages and Operating Systems - Asplos. 549-560. DOI: 10.1145/2451116.2451175 |
0.026 |
|
| 2005 |
Makhluf S, Dror R, Nitzan Y, Abramovich Y, Jelinek R, Gedanken A. Microwave-assisted synthesis of nanocrystalline MgO and its use as a bacteriocide Advanced Functional Materials. 15: 1708-1715. DOI: 10.1002/Adfm.200500029 |
0.026 |
|
| 2011 |
Salmon JK, Moraes MA, Dror RO, Shaw DE. Parallel random numbers: As easy as 1, 2, 3 Proceedings of 2011 Sc - International Conference For High Performance Computing, Networking, Storage and Analysis. DOI: 10.1145/2063384.2063405 |
0.022 |
|
| 2015 |
Dror R, Burshtein Z, Pokrass M, Gvishi R. Transition from saturable to reverse saturable absorption in multi-walled carbon nanotube-doped sol-gel hybrid glasses Journal of the Optical Society of America B: Optical Physics. 32: 2198-2206. DOI: 10.1364/JOSAB.32.002198 |
0.022 |
|
| 2008 |
Gvishi R, Strum G, Shitrit N, Dror R. Optical waveguide fabrication using a fast sol-gel method Optical Materials. 30: 1755-1758. DOI: 10.1016/j.optmat.2007.11.020 |
0.019 |
|
| 2006 |
Lyubin V, Klebanov M, Sfez B, Veinger M, Dror R, Lyubina I. Photoluminescence, photostructural transformations and photoinduced anisotropy in rare-earth-doped chalcogenide glassy films Journal of Non-Crystalline Solids. 352: 1599-1601. DOI: 10.1016/j.jnoncrysol.2005.10.054 |
0.019 |
|
| 2009 |
Lyubin V, Arsh A, Klebanov M, Manevich M, Varshal J, Dror R, Sfez B, Latyshev AV, Nasimov DA, Eisenberg NP. Non-linear dissolution of amorphous arsenic sulfide-selenide photoresist films Applied Physics a: Materials Science and Processing. 97: 109-114. DOI: 10.1007/s00339-009-5337-5 |
0.019 |
|
| 2007 |
Manevich M, Lyubin V, Klebanov M, Broder J, Eisenberg NP, Dror R, Feigel A, Sfez B. Photoinduced phenomena in mAs2S3·nAs2Se3 amorphous films and their application in micro-optics technology Journal of Physics and Chemistry of Solids. 68: 931-935. DOI: 10.1016/j.jpcs.2006.11.015 |
0.018 |
|
| 2009 |
Young C, Bank JA, Dror RO, Grossman JP, Salmon JK, Shaw DE. A 32x32x32, spatially distributed 3D FFT in four microseconds on Anton Proceedings of the Conference On High Performance Computing Networking, Storage and Analysis, Sc '09. DOI: 10.1145/1654059.1654083 |
0.017 |
|
| 2008 |
Lyubin V, Arsh A, Klebanov M, Dror R, Sfez B. Nonlinear photoresists for maskless photolithography on the basis of Ag-doped As2 S3 glassy films Applied Physics Letters. 92. DOI: 10.1063/1.2831006 |
0.016 |
|
| 2008 |
Lyubin V, Arsh A, Klebanov M, Sroumin N, Kantarovich K, Bar I, Dror R, Sfez B. Nonlinear photoresist films fabricated by coevaporation of As 2S3 glass and silver Journal of Optoelectronics and Advanced Materials. 10: 3182-3187. |
0.011 |
|
| 2008 |
Lyubin V, Klebanov M, Dror R, Sfez B. Transient photorefraction in Ge-Pb-S glassy films Physical Review B - Condensed Matter and Materials Physics. 77. DOI: 10.1103/PhysRevB.77.035320 |
0.011 |
|
| 2014 |
Lapidot D, Dror R, Vered E, Mishli O, Levy D, Helman Y. Disease protection and growth promotion of potatoes (Solanum tuberosum L.) by Paenibacillus dendritiformis Plant Pathology. DOI: 10.1111/ppa.12285 |
0.01 |
|
| 2010 |
Dror RO, Grossman JP, Mackenzie KM, Towles B, Chow E, Salmon JK, Young C, Bank JA, Batson B, Deneroff MM, Kuskin JS, Larson RH, Moraes MA, Shaw DE. Exploiting 162-nanosecond end-to-end communication latency on Anton 2010 Acm/Ieee International Conference For High Performance Computing, Networking, Storage and Analysis, Sc 2010. DOI: 10.1109/SC.2010.23 |
0.01 |
|
| 2005 |
Dror R, Feigel A, Veinguer M, Sfez B, Klebanov M, Arsh A, Lyubin V. Sub-micron sculpturing on chalcogenide films Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5720: 56-67. DOI: 10.1117/12.588563 |
0.01 |
|
| 1988 |
Andersen T, Blount A, Dror RB. En lokalsamfunns-orientert psykiatrisk helsetjeneste i massachusetts, USA Nordic Journal of Psychiatry. 42: 225-228. DOI: 10.3109/08039488809094960 |
0.01 |
|
| 1952 |
KOCH W, DROR R, KAPLAN D. Winter thermal comfort in Israel. Harefuah. 43: 154-5. PMID 13021695 |
0.01 |
|
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