Huilei Xu, Ph.D. - Publications

2013 Pharmacology and System Biology Mount Sinai School of Medicine, New York, NY 
Cellular signaling systems

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Xu H, Ang YS, Sevilla A, Lemischka IR, Ma'ayan A. Construction and validation of a regulatory network for pluripotency and self-renewal of mouse embryonic stem cells. Plos Computational Biology. 10: e1003777. PMID 25122140 DOI: 10.1371/journal.pcbi.1003777  0.32
2014 Xu H, DiCarlo J, Satya RV, Peng Q, Wang Y. Comparison of somatic mutation calling methods in amplicon and whole exome sequence data Bmc Genomics. 15. PMID 24678773 DOI: 10.1186/1471-2164-15-244  0.32
2013 Xu H, Baroukh C, Dannenfelser R, Chen EY, Tan CM, Kou Y, Kim YE, Lemischka IR, Ma'ayan A. ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. Database : the Journal of Biological Databases and Curation. 2013: bat045. PMID 23794736 DOI: 10.1093/database/bat045  0.92
2013 Xu H, Papatsenko D, Ma'ayan A, Lemischka I. Biological and Quantitative Models for Stem Cell Self-Renewal and Differentiation Handbook of Systems Biology. 427-441. DOI: 10.1016/B978-0-12-385944-0.00022-8  0.92
2012 Zhou Q, Lv H, Mazloom AR, Xu H, Ma'ayan A, Gallo JM. Activation of alternate prosurvival pathways accounts for acquired sunitinib resistance in U87MG glioma xenografts. The Journal of Pharmacology and Experimental Therapeutics. 343: 509-19. PMID 22869928 DOI: 10.1124/jpet.112.196097  0.92
2012 Kou Y, Betancur C, Xu H, Buxbaum JD, Ma'ayan A. Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability. American Journal of Medical Genetics. Part C, Seminars in Medical Genetics. 160: 130-42. PMID 22499558 DOI: 10.1002/ajmg.c.31330  0.92
2012 Ding J, Xu H, Faiola F, Ma'ayan A, Wang J. Oct4 links multiple epigenetic pathways to the pluripotency network. Cell Research. 22: 155-67. PMID 22083510 DOI: 10.1038/cr.2011.179  0.92
2012 Chen EY, Xu H, Gordonov S, Lim MP, Perkins MH, Ma'ayan A. Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers. Bioinformatics (Oxford, England). 28: 105-11. PMID 22080467 DOI: 10.1093/bioinformatics/btr625  0.92
2012 Dannenfelser R, Xu H, Raimond C, Ma'Ayan A. Network pharmacology to aid the drug discovery process New Frontiers of Network Analysis in Systems Biology. 161-172. DOI: 10.1007/978-94-007-4330-4_9  0.92
2011 Xu H, Ma'ayan A. Visualization of patient samples by dimensionality reduction of genome-wide measurements Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7058: 15-22. DOI: 10.1007/978-3-642-25364-5_2  0.92
2010 Xu H, Lemischka IR, Ma'ayan A. SVM classifier to predict genes important for self-renewal and pluripotency of mouse embryonic stem cells. Bmc Systems Biology. 4: 173. PMID 21176149 DOI: 10.1186/1752-0509-4-173  0.92
2010 Xu H, Schaniel C, Lemischka IR, Ma'ayan A. Toward a complete in silico, multi-layered embryonic stem cell regulatory network. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 708-33. PMID 20890967 DOI: 10.1002/wsbm.93  0.92
2010 Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A. ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinformatics (Oxford, England). 26: 2438-44. PMID 20709693 DOI: 10.1093/bioinformatics/btq466  0.92
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