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Donald C. Rio - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
 1987-1992 Biology Massachusetts Institute of Technology, Cambridge, MA, United States 
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Year Citation  Score
2024 Lee YJ, Rio DC. A mutation in the low-complexity domain of splicing factor hnRNPA1 linked to amyotrophic lateral sclerosis disrupts distinct neuronal RNA splicing networks. Genes & Development. PMID 38182429 DOI: 10.1101/gad.351104.123  0.306
2020 Ghanim GE, Rio DC, Teixeira FK. Mechanism and regulation of P element transposition. Open Biology. 10: 200244. PMID 33352068 DOI: 10.1098/rsob.200244  0.423
2019 Ghanim GE, Kellogg EH, Nogales E, Rio DC. Structure of a P element transposase-DNA complex reveals unusual DNA structures and GTP-DNA contacts. Nature Structural & Molecular Biology. PMID 31659330 DOI: 10.2210/Pdb6Pe2/Pdb  0.48
2019 Kellogg EH, Ghanim G, Nogales E, Rio DC. Towards a Mechanistic Understanding of P element Transposition Using Single-Particle Cryo-EM Microscopy and Microanalysis. 25: 1288-1289. DOI: 10.1017/S1431927619007177  0.352
2019 Kellogg EH, Ghanim G, Nogales E, Rio DC. Cryo-EM Structure of the P-Element Transposase Strand-Transfer Complex Biophysical Journal. 116: 504a. DOI: 10.1016/J.Bpj.2018.11.2720  0.381
2018 Wang Q, Rio DC. JUM is a computational method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patterns. Proceedings of the National Academy of Sciences of the United States of America. PMID 30104386 DOI: 10.1073/Pnas.1806018115  0.342
2018 Lee YJ, Wang Q, Rio DC. Coordinate regulation of alternative pre-mRNA splicing events by the human RNA chaperone proteins hnRNPA1 and DDX5. Genes & Development. PMID 30042133 DOI: 10.1101/Gad.316034.118  0.444
2018 Wang Q, Abruzzi KC, Rosbash M, Rio DC. Striking circadian neuron diversity and cycling of alternative splicing. Elife. 7. PMID 29863472 DOI: 10.7554/Elife.35618  0.338
2017 Teixeira FK, Okuniewska M, Malone CD, Coux RX, Rio DC, Lehmann R. piRNA-mediated regulation of transposon alternative splicing in the soma and germ line. Nature. 552: 268-272. PMID 29211718 DOI: 10.1038/nature25018  0.413
2016 Francis MJ, Roche S, Cho MJ, Beall E, Min B, Panganiban RP, Rio DC. Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27799520 DOI: 10.1073/Pnas.1613508113  0.8
2016 Wang Q, Taliaferro JM, Klibaite U, Hilgers V, Shaevitz JW, Rio DC. The PSI-U1 snRNP interaction regulates male mating behavior in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. PMID 27114556 DOI: 10.1073/Pnas.1600936113  0.733
2015 Horan L, Yasuhara JC, Kohlstaedt LA, Rio DC. Biochemical identification of new proteins involved in splicing repression at the Drosophila P-element exonic splicing silencer. Genes & Development. 29: 2298-311. PMID 26545814 DOI: 10.1101/Gad.268847.115  0.524
2015 Majumdar S, Rio DC. P Transposable Elements in Drosophila and other Eukaryotic Organisms. Microbiology Spectrum. 3: MDNA3-0004-2014. PMID 26104714 DOI: 10.1128/Microbiolspec.Mdna3-0004-2014  0.553
2015 Lee Y, Rio DC. Mechanisms and Regulation of Alternative Pre-mRNA Splicing. Annual Review of Biochemistry. 84: 291-323. PMID 25784052 DOI: 10.1146/Annurev-Biochem-060614-034316  0.46
2014 Rio DC. Reverse transcription-polymerase chain reaction. Cold Spring Harbor Protocols. 2014: 1207-16. PMID 25368309 DOI: 10.1101/pdb.prot080887  0.311
2013 Taliaferro JM, Marwha D, Aspden JL, Mavrici D, Cheng NE, Kohlstaedt LA, Rio DC. The Drosophila splicing factor PSI is phosphorylated by casein kinase II and tousled-like kinase. Plos One. 8: e56401. PMID 23437125 DOI: 10.1371/Journal.Pone.0056401  0.748
2013 Taliaferro JM, Aspden JL, Bradley T, Marwha D, Blanchette M, Rio DC. Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression. Genes & Development. 27: 378-89. PMID 23392611 DOI: 10.1101/Gad.210708.112  0.77
2013 Majumdar S, Singh A, Rio DC. The human THAP9 gene encodes an active P-element DNA transposase. Science (New York, N.Y.). 339: 446-8. PMID 23349291 DOI: 10.1126/Science.1231789  0.487
2011 Hellsten U, Aspden JL, Rio DC, Rokhsar DS. A segmental genomic duplication generates a functional intron. Nature Communications. 2: 454. PMID 21878908 DOI: 10.1038/Ncomms1461  0.315
2011 Brooks AN, Aspden JL, Podgornaia AI, Rio DC, Brenner SE. Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans. Rna (New York, N.Y.). 17: 1884-94. PMID 21865603 DOI: 10.1261/Rna.2696311  0.642
2011 Taliaferro JM, Alvarez N, Green RE, Blanchette M, Rio DC. Evolution of a tissue-specific splicing network. Genes & Development. 25: 608-20. PMID 21406555 DOI: 10.1101/Gad.2009011  0.762
2011 Hartmann B, Castelo R, Miñana B, Peden E, Blanchette M, Rio DC, Singh R, Valcárcel J. Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. Rna (New York, N.Y.). 17: 453-68. PMID 21233220 DOI: 10.1261/Rna.2460411  0.421
2010 Sabogal A, Rio DC. A green fluorescent protein solubility screen in E. coli reveals domain boundaries of the GTP-binding domain in the P element transposase. Protein Science : a Publication of the Protein Society. 19: 2210-8. PMID 20842711 DOI: 10.1002/Pro.499  0.799
2010 Song EJ, Werner SL, Neubauer J, Stegmeier F, Aspden J, Rio D, Harper JW, Elledge SJ, Kirschner MW, Rape M. The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome. Genes & Development. 24: 1434-47. PMID 20595234 DOI: 10.1101/Gad.1925010  0.384
2010 Sabogal A, Lyubimov AY, Corn JE, Berger JM, Rio DC. THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves. Nature Structural & Molecular Biology. 17: 117-23. PMID 20010837 DOI: 10.1038/Nsmb.1742  0.795
2009 Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. Plos Genetics. 5: e1000525. PMID 19543372 DOI: 10.1371/Journal.Pgen.1000525  0.411
2009 Blanchette M, Green RE, MacArthur S, Brooks AN, Brenner SE, Eisen MB, Rio DC. Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. Molecular Cell. 33: 438-49. PMID 19250905 DOI: 10.1016/J.Molcel.2009.01.022  0.66
2009 Hartmann B, Castelo R, Blanchette M, Boue S, Rio DC, Valcárcel J. Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells. Genome Biology. 10: R11. PMID 19178699 DOI: 10.1186/Gb-2009-10-1-R11  0.303
2008 Sharma S, Kohlstaedt LA, Damianov A, Rio DC, Black DL. Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome. Nature Structural & Molecular Biology. 15: 183-91. PMID 18193060 DOI: 10.1038/Nsmb.1375  0.392
2007 Olson S, Blanchette M, Park J, Savva Y, Yeo GW, Yeakley JM, Rio DC, Graveley BR. A regulator of Dscam mutually exclusive splicing fidelity. Nature Structural & Molecular Biology. 14: 1134-40. PMID 21188797 DOI: 10.1038/Nsmb1339  0.36
2007 Tang M, Cecconi C, Bustamante C, Rio DC. Analysis of P element transposase protein-DNA interactions during the early stages of transposition. The Journal of Biological Chemistry. 282: 29002-12. PMID 17644523 DOI: 10.1074/Jbc.M704106200  0.538
2007 Weinert BT, Rio DC. DNA strand displacement, strand annealing and strand swapping by the Drosophila Bloom's syndrome helicase. Nucleic Acids Research. 35: 1367-76. PMID 17272294 DOI: 10.1093/Nar/Gkl831  0.706
2006 Chmiel NH, Rio DC, Doudna JA. Distinct contributions of KH domains to substrate binding affinity of Drosophila P-element somatic inhibitor protein. Rna (New York, N.Y.). 12: 283-91. PMID 16428607 DOI: 10.1261/Rna.2175706  0.476
2005 Chen L, Lullo DJ, Ma E, Celniker SE, Rio DC, Doudna JA. Identification and analysis of U5 snRNA variants in Drosophila. Rna (New York, N.Y.). 11: 1473-7. PMID 16199758 DOI: 10.1261/Rna.2141505  0.427
2005 Remus D, Blanchette M, Rio DC, Botchan MR. CDK phosphorylation inhibits the DNA-binding and ATP-hydrolysis activities of the Drosophila origin recognition complex. The Journal of Biological Chemistry. 280: 39740-51. PMID 16188887 DOI: 10.1074/Jbc.M508515200  0.354
2005 Tang M, Cecconi C, Kim H, Bustamante C, Rio DC. Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes. Genes & Development. 19: 1422-5. PMID 15964992 DOI: 10.1101/Gad.1317605  0.489
2005 Blanchette M, Green RE, Brenner SE, Rio DC. Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. Genes & Development. 19: 1306-14. PMID 15937219 DOI: 10.1101/Gad.1314205  0.367
2005 Weinert BT, Min B, Rio DC. P element excision and repair by non-homologous end joining occurs in both G1 and G2 of the cell cycle. Dna Repair. 4: 171-81. PMID 15590325 DOI: 10.1016/J.Dnarep.2004.09.004  0.711
2004 Chen L, Rio DC, Haddad GG, Ma E. Regulatory role of dADAR in ROS metabolism in Drosophila CNS. Brain Research. Molecular Brain Research. 131: 93-100. PMID 15530657 DOI: 10.1016/J.Molbrainres.2004.08.013  0.335
2004 Blanchette M, Labourier E, Green RE, Brenner SE, Rio DC. Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs. Molecular Cell. 14: 775-86. PMID 15200955 DOI: 10.1016/J.Molcel.2004.06.012  0.425
2004 Min B, Weinert BT, Rio DC. Interplay between Drosophila Bloom's syndrome helicase and Ku autoantigen during nonhomologous end joining repair of P element-induced DNA breaks. Proceedings of the National Academy of Sciences of the United States of America. 101: 8906-11. PMID 15184650 DOI: 10.1073/Pnas.0403000101  0.752
2004 Brodsky MH, Weinert BT, Tsang G, Rong YS, McGinnis NM, Golic KG, Rio DC, Rubin GM. Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage. Molecular and Cellular Biology. 24: 1219-31. PMID 14729967 DOI: 10.1128/Mcb.24.3.1219-1231.2004  0.73
2003 Green RE, Lewis BP, Hillman RT, Blanchette M, Lareau LF, Garnett AT, Rio DC, Brenner SE. Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics (Oxford, England). 19: i118-21. PMID 12855447 DOI: 10.1093/Bioinformatics/Btg1015  0.339
2002 Beall EL, Mahoney MB, Rio DC. Identification and analysis of a hyperactive mutant form of Drosophila P-element transposase. Genetics. 162: 217-27. PMID 12242235  0.376
2002 Rio D. Half-pint: Alternative splicing in the Drosophila ovary Molecular Cell. 9: 456-457. PMID 11931754 DOI: 10.1016/S1097-2765(02)00491-4  0.393
2002 Labourier E, Blanchette M, Feiger JW, Adams MD, Rio DC. The KH-type RNA-binding protein PSI is required for Drosophila viability, male fertility, and cellular mRNA processing. Genes & Development. 16: 72-84. PMID 11782446 DOI: 10.1101/Gad.948602  0.463
2001 Amarasinghe AK, MacDiarmid R, Adams MD, Rio DC. An in vitro-selected RNA-binding site for the KH domain protein PSI acts as a splicing inhibitor element. Rna (New York, N.Y.). 7: 1239-53. PMID 11565747 DOI: 10.1017/S1355838201010603  0.518
2001 Labourier E, Adams MD, Rio DC. Modulation of P-element pre-mRNA splicing by a direct interaction between PSI and U1 snRNP 70K protein. Molecular Cell. 8: 363-73. PMID 11545738 DOI: 10.1016/S1097-2765(01)00311-2  0.531
2001 Labourier E, Rio DC. Purification of Drosophila snRNPs and characterization of two populations of functional U1 particles. Rna (New York, N.Y.). 7: 457-70. PMID 11333025 DOI: 10.1017/S1355838201001327  0.347
1999 Rio DC. Trans-silencing by P elements inserted in subtelomeric heterochromatin involves the Drosophila polycomb group gene, Enhancer of zeste. Genetics. 153: 507. PMID 10576985  0.312
1999 Crowder SM, Kanaar R, Rio DC, Alber T. Absence of interdomain contacts in the crystal structure of the RNA recognition motifs of Sex-lethal. Proceedings of the National Academy of Sciences of the United States of America. 96: 4892-7. PMID 10220389 DOI: 10.1073/Pnas.96.9.4892  0.412
1998 Roche SE, Rio DC. Trans-silencing by P elements inserted in subtelomeric heterochromatin involves the Drosophila Polycomb group gene, Enhancer of zeste. Genetics. 149: 1839-55. PMID 9691041  0.725
1998 Lee CC, Beall EL, Rio DC. DNA binding by the KP repressor protein inhibits P-element transposase activity in vitro. The Embo Journal. 17: 4166-74. PMID 9670031 DOI: 10.1093/Emboj/17.14.4166  0.541
1998 Rudner DZ, Breger KS, Kanaar R, Adams MD, Rio DC. RNA binding activity of heterodimeric splicing factor U2AF: at least one RS domain is required for high-affinity binding. Molecular and Cellular Biology. 18: 4004-11. PMID 9632785 DOI: 10.1128/Mcb.18.7.4004  0.405
1998 Rudner DZ, Breger KS, Rio DC. Molecular genetic analysis of the heterodimeric splicing factor U2AF: the RS domain on either the large or small Drosophila subunit is dispensable in vivo. Genes & Development. 12: 1010-21. PMID 9531538 DOI: 10.1101/Gad.12.7.1010  0.334
1998 Rudner DZ, Kanaar R, Breger KS, Rio DC. Interaction between subunits of heterodimeric splicing factor U2AF is essential in vivo. Molecular and Cellular Biology. 18: 1765-73. PMID 9528748 DOI: 10.1128/Mcb.18.4.1765  0.357
1998 Beall EL, Rio DC. Transposase makes critical contacts with, and is stimulated by, single-stranded DNA at the P element termini in vitro. The Embo Journal. 17: 2122-36. PMID 9524133 DOI: 10.1093/Emboj/17.7.2122  0.495
1997 Lee AL, Volkman BF, Robertson SA, Rudner DZ, Barbash DA, Cline TW, Kanaar R, Rio DC, Wemmer DE. Chemical shift mapping of the RNA-binding interface of the multiple-RBD protein sex-lethal. Biochemistry. 36: 14306-17. PMID 9398148 DOI: 10.1021/Bi970830Y  0.419
1997 Hammond LE, Rudner DZ, Kanaar R, Rio DC. Mutations in the hrp48 gene, which encodes a Drosophila heterogeneous nuclear ribonucleoprotein particle protein, cause lethality and developmental defects and affect P-element third-intron splicing in vivo. Molecular and Cellular Biology. 17: 7260-7. PMID 9372958 DOI: 10.1128/Mcb.17.12.7260  0.485
1997 Beall EL, Rio DC. Drosophila P-element transposase is a novel site-specific endonuclease. Genes & Development. 11: 2137-51. PMID 9284052 DOI: 10.1101/Gad.11.16.2137  0.497
1997 Mul YM, Rio DC. Reprogramming the purine nucleotide cofactor requirement of Drosophila P element transposase in vivo. The Embo Journal. 16: 4441-7. PMID 9250688 DOI: 10.1093/Emboj/16.14.4441  0.509
1997 Barnes G, Rio D. DNA double-strand-break sensitivity, DNA replication, and cell cycle arrest phenotypes of Ku-deficient Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America. 94: 867-872. PMID 9023348 DOI: 10.1073/Pnas.94.3.867  0.394
1997 Adams MD, Tarng RS, Rio DC. The alternative splicing factor PSI regulates P-element third intron splicing in vivo. Genes & Development. 11: 129-38. PMID 9000056  0.396
1996 Rudner DZ, Kanaar R, Breger KS, Rio DC. Mutations in the small subunit of the Drosophila U2AF splicing factor cause lethality and developmental defects. Proceedings of the National Academy of Sciences of the United States of America. 93: 10333-7. PMID 8816800 DOI: 10.1073/Pnas.93.19.10333  0.457
1996 Lee CC, Mul YM, Rio DC. The Drosophila P-element KP repressor protein dimerizes and interacts with multiple sites on P-element DNA. Molecular and Cellular Biology. 16: 5616-22. PMID 8816474 DOI: 10.1128/Mcb.16.10.5616  0.537
1996 Adams MD, Rudner DZ, Rio DC. Biochemistry and regulation of pre-mRNA splicing. Current Opinion in Cell Biology. 8: 331-9. PMID 8743883 DOI: 10.1016/S0955-0674(96)80006-8  0.432
1996 Beall EL, Rio DC. Drosophila IRBP/Ku p70 corresponds to the mutagen-sensitive mus309 gene and is involved in P-element excision in vivo. Genes & Development. 10: 921-33. PMID 8608940 DOI: 10.1101/Gad.10.8.921  0.508
1995 Siebel CW, Admon A, Rio DC. Soma-specific expression and cloning of PSI, a negative regulator of P element pre-mRNA splicing. Genes & Development. 9: 269-83. PMID 7867926 DOI: 10.1101/Gad.9.3.269  0.541
1995 Roche SE, Schiff M, Rio DC. P-element repressor autoregulation involves germ-line transcriptional repression and reduction of third intron splicing. Genes & Development. 9: 1278-88. PMID 7758951  0.733
1995 Kanaar R, Lee AL, Rudner DZ, Wemmer DE, Rio DC. Interaction of the sex-lethal RNA binding domains with RNA. The Embo Journal. 14: 4530-9. PMID 7556096 DOI: 10.1002/J.1460-2075.1995.Tb00132.X  0.463
1994 Siebel CW, Kanaar R, Rio DC. Regulation of tissue-specific P-element pre-mRNA splicing requires the RNA-binding protein PSI. Genes & Development. 8: 1713-25. PMID 7958851 DOI: 10.1101/Gad.8.14.1713  0.546
1994 Beall EL, Admon A, Rio DC. A Drosophila protein homologous to the human p70 Ku autoimmune antigen interacts with the P transposable element inverted repeats. Proceedings of the National Academy of Sciences of the United States of America. 91: 12681-5. PMID 7809101 DOI: 10.1073/Pnas.91.26.12681  0.521
1994 Lee AL, Kanaar R, Rio DC, Wemmer DE. Resonance assignments and solution structure of the second RNA-binding domain of sex-lethal determined by multidimensional heteronuclear magnetic resonance. Biochemistry. 33: 13775-86. PMID 7524663 DOI: 10.1021/Bi00250A031  0.373
1993 Misra S, Buratowski RM, Ohkawa T, Rio DC. Cytotype control of Drosophila melanogaster P element transposition: genomic position determines maternal repression. Genetics. 135: 785-800. PMID 8293979  0.348
1993 Rio DC. Splicing of pre-mRNA: mechanism, regulation and role in development. Current Opinion in Genetics & Development. 3: 574-84. PMID 8241769 DOI: 10.1016/0959-437X(93)90093-5  0.461
1993 Kanaar R, Roche SE, Beall EL, Green MR, Rio DC. The conserved pre-mRNA splicing factor U2AF from Drosophila: requirement for viability. Science (New York, N.Y.). 262: 569-73. PMID 7692602  0.715
1992 Rio DC. RNA binding proteins, splice site selection, and alternative pre-mRNA splicing. Gene Expression. 2: 1-5. PMID 1617299  0.314
1992 Rio DC. RNA processing. Current Opinion in Cell Biology. 4: 444-52. PMID 1497915 DOI: 10.1016/0955-0674(92)90010-A  0.319
1992 Siebel CW, Fresco LD, Rio DC. The mechanism of somatic inhibition of Drosophila P-element pre-mRNA splicing: multiprotein complexes at an exon pseudo-5' splice site control U1 snRNP binding. Genes & Development. 6: 1386-401. PMID 1322855 DOI: 10.1101/Gad.6.8.1386  0.497
1992 Kaufman PD, Rio DC. P element transposition in vitro proceeds by a cut-and-paste mechanism and uses GTP as a cofactor. Cell. 69: 27-39. PMID 1313335 DOI: 10.1016/0092-8674(92)90116-T  0.696
1991 Kaufman PD, Rio DC. Drosophila P-element transposase is a transcriptional repressor in vitro. Proceedings of the National Academy of Sciences of the United States of America. 88: 2613-7. PMID 1849267 DOI: 10.1073/Pnas.88.7.2613  0.734
1991 Rio DC. Regulation of Drosophila P element transposition. Trends in Genetics : Tig. 7: 282-7. PMID 1662417 DOI: 10.1016/0168-9525(91)90309-E  0.373
1991 Kaufman PD, Rio DC. Germline transformation of Drosophila melanogaster by purified P element transposase. Nucleic Acids Research. 19: 6336. PMID 1659690 DOI: 10.1093/Nar/19.22.6336  0.651
1990 Misra S, Rio DC. Cytotype control of Drosophila P element transposition: the 66 kd protein is a repressor of transposase activity. Cell. 62: 269-84. PMID 2164887 DOI: 10.1016/0092-8674(90)90365-L  0.373
1990 Siebel CW, Rio DC. Regulated splicing of the Drosophila P transposable element third intron in vitro: somatic repression. Science (New York, N.Y.). 248: 1200-8. PMID 2161558  0.46
1990 Rio DC. Molecular mechanisms regulating Drosophila P element transposition Annual Review of Genetics. 24: 543-578. PMID 1965103  0.324
1989 Kaufman PD, Doll RF, Rio DC. Drosophila P element transposase recognizes internal P element DNA sequences. Cell. 59: 359-71. PMID 2553268 DOI: 10.1016/0092-8674(89)90297-3  0.739
1989 Mullins MC, Rio DC, Rubin GM. cis-acting DNA sequence requirements for P-element transposition. Genes & Development. 3: 729-38. PMID 2545527 DOI: 10.1101/Gad.3.5.729  0.478
1989 Doll RF, Kaufman PD, Misra S, Rio DC. Molecular biology of Drosophila P-element transposition. Progress in Nucleic Acid Research and Molecular Biology. 36: 47-57. PMID 2544014 DOI: 10.1016/S0079-6603(08)60160-9  0.672
1988 Rio DC, Rubin GM. Identification and purification of a Drosophila protein that binds to the terminal 31-base-pair inverted repeats of the P transposable element. Proceedings of the National Academy of Sciences of the United States of America. 85: 8929-33. PMID 2848246 DOI: 10.1073/Pnas.85.23.8929  0.444
1988 Rio DC, Barnes G, Laski FA, Rine J, Rubin GM. Evidence for Drosophila P element transposase activity in mammalian cells and yeast. Journal of Molecular Biology. 200: 411-5. PMID 2836597 DOI: 10.1016/0022-2836(88)90250-1  0.497
1986 Laski FA, Rio DC, Rubin GM. Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing. Cell. 44: 7-19. PMID 3000622 DOI: 10.1016/0092-8674(86)90480-0  0.513
1986 Rio DC, Laski FA, Rubin GM. Identification and immunochemical analysis of biologically active Drosophila P element transposase. Cell. 44: 21-32. PMID 2416475 DOI: 10.1016/0092-8674(86)90481-2  0.49
1985 Rio DC, Clark SG, Tjian R. A mammalian host-vector system that regulates expression and amplification of transfected genes by temperature induction Science. 227: 23-28. PMID 2981116 DOI: 10.1126/Science.2981116  0.349
1983 Rio DC, Tjian R. SV40 T antigen binding site mutations that affect autoregulation Cell. 32: 1227-1240. PMID 6301686 DOI: 10.1016/0092-8674(83)90305-7  0.367
1981 Myers RM, Rio DC, Robbins AK, Tjian R. SV40 gene expression is modulated by the cooperative binding of T antigen to DNA Cell. 25: 373-384. PMID 6269743 DOI: 10.1016/0092-8674(81)90056-8  0.444
1981 Rio D, Robbins A, Myers R, Tjian R. Regulation of simian virus 40 early transcription in vitro by a purified tumor antigen. Proceedings of the National Academy of Sciences of the United States of America. 77: 5706-10. PMID 6255460 DOI: 10.1073/Pnas.77.10.5706  0.486
1979 Cech TR, Rio DC. Localization of transcribed regions on extrachromosomal ribosomal RNA genes of Tetrahymena thermophila by R-loop mapping Proceedings of the National Academy of Sciences of the United States of America. 76: 5051-5055. PMID 291921 DOI: 10.1073/Pnas.76.10.5051  0.407
Low-probability matches (unlikely to be authored by this person)
2015 Majumdar S, Rio DC. P transposable elements in Drosophila and other eukaryotic organisms. Microbiology Spectrum. 3. PMID 25893144 DOI: 10.1128/microbiolspec.MDNA3-0004-2014  0.296
1984 Rio DC, Tjian R. Multiple control elements involved in the initiation of SV40 late transcription Journal of Molecular and Applied Genetics. 2: 423-435. PMID 6090561  0.294
2014 Rio DC. Large-scale immunopurification of ribonucleoprotein complexes from Drosophila nucleoplasmic extracts for tiling microarrays. Cold Spring Harbor Protocols. 2014: 299-303. PMID 24591694 DOI: 10.1101/pdb.prot080705  0.29
1985 Rio DC, Rubin GM. Transformation of cultured Drosophila melanogaster cells with a dominant selectable marker. Molecular and Cellular Biology. 5: 1833-8. PMID 3018529 DOI: 10.1128/Mcb.5.8.1833  0.282
1985 Rubin GM, Hazelrigg T, Karess RE, Laski FA, Laverty T, Levis R, Rio DC, Spencer FA, Zuker CS. Germ line specificity of P-element transposition and some novel patterns of expression of transduced copies of the white gene. Cold Spring Harbor Symposia On Quantitative Biology. 50: 329-35. PMID 3006994 DOI: 10.1101/Sqb.1985.050.01.042  0.277
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of DNA from RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5443. PMID 20516181 DOI: 10.1101/Pdb.Prot5443  0.267
2007 Huang SH, Rio DC, Marletta MA. Ligand binding and inhibition of an oxygen-sensitive soluble guanylate cyclase, Gyc-88E, from Drosophila. Biochemistry. 46: 15115-22. PMID 18044974 DOI: 10.1021/Bi701771R  0.267
2014 Rio DC. Electrophoretic mobility shift assays for RNA-protein complexes. Cold Spring Harbor Protocols. 2014: 435-40. PMID 24692495 DOI: 10.1101/pdb.prot080721  0.265
2013 Rio DC. Ultraviolet photochemical cross-linking to detect RNA-binding proteins. Cold Spring Harbor Protocols. 2013: 1178-81. PMID 24298030 DOI: 10.1101/pdb.prot079418  0.265
1988 Rio DC. Accurate and efficient pre-mRNA splicing in Drosophila cell-free extracts Proceedings of the National Academy of Sciences of the United States of America. 85: 2904-2908. PMID 3362856  0.263
2011 Pastuszak AW, Joachimiak MP, Blanchette M, Rio DC, Brenner SE, Frankel AD. An SF1 affinity model to identify branch point sequences in human introns. Nucleic Acids Research. 39: 2344-56. PMID 21071404 DOI: 10.1093/Nar/Gkq1046  0.261
1991 Frankel AD, Mattaj IW, Rio DC. RNA-protein interactions. Cell. 67: 1041-6. PMID 1722140 DOI: 10.1016/0092-8674(91)90282-4  0.26
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of DNA from RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5443  0.259
2018 Wang Q, Abruzzi KC, Rosbash M, Rio DC. Author response: Striking circadian neuron diversity and cycling of Drosophila alternative splicing Elife. DOI: 10.7554/Elife.35618.042  0.257
1986 Robbins PD, Rio DC, Botchan MR. trans Activation of the simian virus 40 enhancer. Molecular and Cellular Biology. 6: 1283-95. PMID 3023880 DOI: 10.1128/Mcb.6.4.1283  0.251
2012 Rio DC. Filter-binding assay for analysis of RNA-protein interactions. Cold Spring Harbor Protocols. 2012: 1078-81. PMID 23028069 DOI: 10.1101/pdb.prot071449  0.249
2013 Rio DC. Expression and purification of active recombinant T7 RNA polymerase from E. coli. Cold Spring Harbor Protocols. 2013. PMID 24184761 DOI: 10.1101/pdb.prot078527  0.248
2020 Wang Q, Conlon E, Manley J, Rio D. Widespread intron retention impairs protein homeostasis in C9orf72 ALS brains. Genome Research. PMID 33055097 DOI: 10.1101/gr.265298.120  0.247
2014 Rio DC. 3'-End labeling of RNA with yeast Poly(A) polymerase and 3'-deoxyadenosine 5'-[α-32P]triphosphate. Cold Spring Harbor Protocols. 2014: 687-9. PMID 24890209 DOI: 10.1101/pdb.prot080770  0.246
2012 Nilsen TW, Rio DC. In vitro transcription of labeled RNA: Synthesis, capping, and substitution Cold Spring Harbor Protocols. 7: 1181-1186. PMID 23118360 DOI: 10.1101/Pdb.Prot072066  0.244
2015 Rio DC. Northern blots: capillary transfer of RNA from agarose gels and filter hybridization using standard stringency conditions. Cold Spring Harbor Protocols. 2015: 306-13. PMID 25734063 DOI: 10.1101/pdb.prot081018  0.234
2013 Nilsen TW, Rio DC, Ares M. High-yield synthesis of RNA using T7 RNA polymerase and plasmid DNA or oligonucleotide templates. Cold Spring Harbor Protocols. 2013. PMID 24184762 DOI: 10.1101/Pdb.Prot078535  0.233
2018 Rio DC. Erratum: Electrophoretic Mobility Shift Assays for RNA-Protein Complexes. Cold Spring Harbor Protocols. 2018: pdb.err106104. PMID 30275071 DOI: 10.1101/pdb.err106104  0.224
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA using TRIzol (TRI reagent). Cold Spring Harbor Protocols. 2010: pdb.prot5439. PMID 20516177 DOI: 10.1101/Pdb.Prot5439  0.216
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Nondenaturing agarose gel electrophoresis of RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5445. PMID 20516183 DOI: 10.1101/Pdb.Prot5445  0.213
2014 Rio DC. 5'-end labeling of RNA with [γ-32P]ATP and T4 polynucleotide kinase. Cold Spring Harbor Protocols. 2014: 441-3. PMID 24692496 DOI: 10.1101/pdb.prot080739  0.212
2014 Rio DC. Northern blots for small RNAs and microRNAs. Cold Spring Harbor Protocols. 2014: 793-7. PMID 24987143 DOI: 10.1101/pdb.prot080838  0.205
2022 Li H, Busquets O, Verma Y, Syed KM, Kutnowski N, Pangilinan GR, Gilbert LA, Bateup HS, Rio DC, Hockemeyer D, Soldner F. Highly efficient generation of isogenic pluripotent stem cell models using prime editing. Elife. 11. PMID 36069759 DOI: 10.7554/eLife.79208  0.203
2015 Rio DC. Denaturation and electrophoresis of RNA with glyoxal. Cold Spring Harbor Protocols. 2015: 223-6. PMID 25646499 DOI: 10.1101/pdb.prot081000  0.199
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Enrichment of poly(A)+ mRNA using immobilized oligo(dT). Cold Spring Harbor Protocols. 2010: pdb.prot5454. PMID 20647358 DOI: 10.1101/Pdb.Prot5454  0.197
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of ribosomal subunits (and rRNA) from cytoplasmic extracts before solubilization with SDS and deproteinization. Cold Spring Harbor Protocols. 2010: pdb.prot5442. PMID 20516180 DOI: 10.1101/Pdb.Prot5442  0.195
2015 Muller RY, Hammond MC, Rio DC, Lee YJ. An Efficient Method for Electroporation of Small Interfering RNAs into ENCODE Project Tier 1 GM12878 and K562 Cell Lines. Journal of Biomolecular Techniques : Jbt. PMID 26543439 DOI: 10.7171/Jbt.15-2604-003  0.194
2015 Rio DC. Denaturation and electrophoresis of RNA with formaldehyde. Cold Spring Harbor Protocols. 2015: 219-22. PMID 25646498 DOI: 10.1101/pdb.prot080994  0.189
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Polyacrylamide gel electrophoresis of RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5444. PMID 20516182 DOI: 10.1101/Pdb.Prot5444  0.182
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA by SDS solubilization and phenol extraction. Cold Spring Harbor Protocols. 2010: pdb.prot5438. PMID 20516176 DOI: 10.1101/Pdb.Prot5438  0.179
2014 Rio DC. In vitro splicing reactions in Drosophila Kc nuclear extracts. Cold Spring Harbor Protocols. 2014: 887-90. PMID 25086019 DOI: 10.1101/pdb.prot080853  0.176
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Determining the yield and quality of purified RNA. Cold Spring Harbor Protocols. 2010: pdb.top82. PMID 20516190 DOI: 10.1101/Pdb.Top82  0.172
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA using TRIzol (TRI Reagent) Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5439  0.172
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Nondenaturing agarose gel electrophoresis of RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5445  0.171
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Guidelines for the use of RNA purification kits. Cold Spring Harbor Protocols. 2010: pdb.ip79. PMID 20647349 DOI: 10.1101/Pdb.Ip79  0.17
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Polyacrylamide gel electrophoresis of RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5444  0.168
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Preparation of cytoplasmic and nuclear RNA from tissue culture cells Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5441  0.162
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Ethanol precipitation of RNA and the use of carriers. Cold Spring Harbor Protocols. 2010: pdb.prot5440. PMID 20516178 DOI: 10.1101/Pdb.Prot5440  0.158
2010 Rio DC, Ares MJ, Hannon GJ, Nilsen TW. Guidelines for the use of RNA purification kits Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.ip79  0.155
2015 Rio D. Twenty years of RNA Rna. 21: 718-720. PMID 25780207 DOI: 10.1261/rna.049817.115  0.148
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Determining the yield and quality of purified RNA Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.top82  0.14
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Enrichment of poly(A)+ mRNA using immobilized oligo(dT) Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5454  0.138
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Purification of RNA by SDS solubilization and phenol extraction Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5438  0.138
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Ethanol precipitation of RNA and the use of carriers Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5440  0.124
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Preparation of cytoplasmic and nuclear RNA from tissue culture cells. Cold Spring Harbor Protocols. 2010: pdb.prot5441. PMID 20516179 DOI: 10.1101/Pdb.Prot5441  0.123
2014 Rio DC. Preparation of ribonucleoprotein-enriched nucleoplasmic extracts from Drosophila cells. Cold Spring Harbor Protocols. 2014: 295-8. PMID 24591693 DOI: 10.1101/pdb.prot080697  0.119
2024 Busquets O, Li H, Syed KM, Jerez PA, Dunnack J, Bu RL, Verma Y, Pangilinan GR, Martin A, Straub J, Du Y, Simon VM, Poser S, Bush Z, Diaz J, ... ... Rio DC, et al. iSCORE-PD: an isogenic stem cell collection to research Parkinson's Disease. Biorxiv : the Preprint Server For Biology. PMID 38405931 DOI: 10.1101/2024.02.12.579917  0.1
2010 Rio DC, Ares M, Hannon GJ, Nilsen TW. Removal of ribosomal subunits (and rRNA) from cytoplasmic extracts before solubilization with SDS and deproteinization Cold Spring Harbor Protocols. 5. DOI: 10.1101/pdb.prot5442  0.091
2014 Rio DC. Preparation of Drosophila Kc cell nuclear extracts for in vitro splicing. Cold Spring Harbor Protocols. 2014: 891-5. PMID 25086018 DOI: 10.1101/pdb.prot080846  0.087
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