Angela N. Brooks, Ph.D. - Related publications

2011 Molecular & Cell Biology University of California, Berkeley, Berkeley, CA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zhang Y, Qian J, Gu C, Yang Y. Alternative splicing and cancer: a systematic review. Signal Transduction and Targeted Therapy. 6: 78. PMID 33623018 DOI: 10.1038/s41392-021-00486-7   
2021 McDougall LI, Powell RM, Ratajska M, Lynch-Sutherland CF, Hossain SM, Wiggins GAR, Harazin-Lechowska A, Cybulska-Stopa B, Motwani J, Macaulay EC, Reid G, Walker LC, Ryś J, Eccles MR. Differential Expression of Isoforms in Melanoma. Genes. 12. PMID 33672422 DOI: 10.3390/genes12020320   
2021 Simpson E, Chen S, Reiter JL, Liu Y. Differential Splicing of Skipped-exons Predicts Drug Response in Cancer Cell Lines. Genomics, Proteomics & Bioinformatics. PMID 33662622 DOI: 10.1016/j.gpb.2019.08.003   
2021 Ha J, Jang H, Choi N, Oh J, Min C, Pradella D, Jung DW, Williams DR, Park D, Ghigna C, Zheng X, Shen H. SRSF9 Regulates Cassette Exon Splicing of Caspase-2 by Interacting with Its Downstream Exon. Cells. 10. PMID 33808656 DOI: 10.3390/cells10030679   
2021 Zhang Y, Wu X, Li J, Sun K, Li H, Yan L, Duan C, Liu H, Chen K, Ye Z, Liu M, Xu H. Comprehensive characterization of alternative splicing in renal cell carcinoma. Briefings in Bioinformatics. PMID 33822848 DOI: 10.1093/bib/bbab084   
2021 Cieśla M, Ngoc PCT, Cordero E, Martinez ÁS, Morsing M, Muthukumar S, Beneventi G, Madej M, Munita R, Jönsson T, Lövgren K, Ebbesson A, Nodin B, Hedenfalk I, Jirström K, et al. Oncogenic translation directs spliceosome dynamics revealing an integral role for SF3A3 in breast cancer. Molecular Cell. PMID 33662273 DOI: 10.1016/j.molcel.2021.01.034   
2021 Zhang L, Wang Y, Zhang Y, Zhao Y, Li P. Pathogenic mechanisms and the potential clinical value of circFoxo3 in cancers. Molecular Therapy. Nucleic Acids. 23: 908-917. PMID 33614239 DOI: 10.1016/j.omtn.2021.01.010   
2021 Chen P, Guo H, Liu Y, Chen B, Zhao S, Wu S, Li W, Wang L, Jia K, Wang H, Jiang M, Tang X, Qi H, Dai C, Ye J, et al. Aberrant methylation modifications reflect specific drug responses in small cell lung cancer. Genomics. PMID 33705885 DOI: 10.1016/j.ygeno.2020.12.045   
2021 Chao Y, Jiang Y, Zhong M, Wei K, Hu C, Qin Y, Zuo Y, Yang L, Shen Z, Zou C. Regulatory roles and mechanisms of alternative RNA splicing in adipogenesis and human metabolic health. Cell & Bioscience. 11: 66. PMID 33795017 DOI: 10.1186/s13578-021-00581-w   
2021 Nguyen K, Wang Y, England WE, Chaput JC, Spitale RC. Allele-Specific RNA Knockdown with a Biologically Stable and Catalytically Efficient XNAzyme. Journal of the American Chemical Society. PMID 33750115 DOI: 10.1021/jacs.0c11353   
2021 Fan Z, Zhang Z, Piao C, Liu Z, Wang Z, Kong C. Genome-Wide Analyses of Prognostic and Therapeutic Alternative Splicing Signatures in Bladder Urothelial Carcinoma. Frontiers in Oncology. 11: 626858. PMID 33842332 DOI: 10.3389/fonc.2021.626858   
2021 Doenier J, Lynch T, Kimble J, Aoki ST. An improved in vivo tethering assay with single molecule FISH reveals that a nematode Nanos enhances reporter expression and mRNA stability. Rna (New York, N.Y.). PMID 33727224 DOI: 10.1261/rna.078693.121   
2021 Morbidoni V, Baschiera E, Forzan M, Fumini V, Ali DS, Giorgi G, Buson L, Desbats MA, Cassina M, Clementi M, Salviati L, Trevisson E. Hybrid Minigene Assay: An Efficient Tool to Characterize mRNA Splicing Profiles of Variants. Cancers. 13. PMID 33673681 DOI: 10.3390/cancers13050999   
2021 Elorza A, Márquez Y, Cabrera JR, Sánchez-Trincado JL, Santos-Galindo M, Hernández IH, Picó S, Díaz-Hernández JI, García-Escudero R, Irimia M, Lucas JJ. Huntington's disease-specific mis-splicing unveils key effector genes and altered splicing factors. Brain : a Journal of Neurology. PMID 33725094 DOI: 10.1093/brain/awab087   
2021 Qian X, Wang J, Wang M, Igelman AD, Jones KD, Li Y, Wang K, Goetz KE, Birch DG, Yang P, Pennesi ME, Chen R. Identification of Deep-Intronic Splice Mutations in a Large Cohort of Patients With Inherited Retinal Diseases. Frontiers in Genetics. 12: 647400. PMID 33737949 DOI: 10.3389/fgene.2021.647400   
2021 Guo Z, Shafik AM, Jin P, Wu Z, Wu H. Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing. Bioinformatics (Oxford, England). PMID 33724304 DOI: 10.1093/bioinformatics/btab181   
2021 Álvarez B, Revilla C, Domínguez J, Ezquerra A. Expression of CLEC4A in porcine tissues and leukocyte populations and characterization of mRNA splice variants. Molecular Immunology. 132: 157-164. PMID 33592571 DOI: 10.1016/j.molimm.2021.01.027   
2021 Álvarez B, Revilla C, Domínguez J, Ezquerra A. Expression of CLEC4A in porcine tissues and leukocyte populations and characterization of mRNA splice variants. Molecular Immunology. 132: 157-164. PMID 33592571 DOI: 10.1016/j.molimm.2021.01.027   
2021 Inoue D, Polaski JT, Taylor J, Castel P, Chen S, Kobayashi S, Hogg SJ, Hayashi Y, Pineda JMB, El Marabti E, Erickson C, Knorr K, Fukumoto M, Yamazaki H, Tanaka A, et al. Minor intron retention drives clonal hematopoietic disorders and diverse cancer predisposition. Nature Genetics. PMID 33846634 DOI: 10.1038/s41588-021-00828-9   
2021 Liu X, Andrews MV, Skinner JP, Johanson TM, Chong MMW. A comparison of alternative mRNA splicing in the CD4 and CD8 T cell lineages. Molecular Immunology. 133: 53-62. PMID 33631555 DOI: 10.1016/j.molimm.2021.02.009   
2021 Chen SL, Zhu ZX, Yang X, Liu LL, He YF, Yang MM, Guan XY, Wang X, Yun JP. Cleavage and Polyadenylation Specific Factor 1 Promotes Tumor Progression Alternative Polyadenylation and Splicing in Hepatocellular Carcinoma. Frontiers in Cell and Developmental Biology. 9: 616835. PMID 33748106 DOI: 10.3389/fcell.2021.616835   
2021 Wu B, Wang Z, Lin N, Yan X, Lv Z, Ying Z, Ye Z. A panel of eight mRNA signatures improves prognosis prediction of osteosarcoma patients. Medicine. 100: e24118. PMID 33832059 DOI: 10.1097/MD.0000000000024118   
2021 Canbezdi C, Tarin M, Houy A, Bellanger D, Popova T, Stern MH, Roman-Roman S, Alsafadi S. Functional and conformational impact of cancer-associated mutations depends on the position and the charge of amino acid substitution. Computational and Structural Biotechnology Journal. 19: 1361-1370. PMID 33777335 DOI: 10.1016/j.csbj.2021.02.012   
2021 Li Z, Zhao B, Shi Y, Liang Y, Qian R, Wan Y. Characterization of the aberrant splicing of MAP3K7 induced by cancer-associated SF3B1 mutation. Journal of Biochemistry. PMID 33751071 DOI: 10.1093/jb/mvab023   
2021 Wang X, Liu C, Zhang S, Yan H, Zhang L, Jiang A, Liu Y, Feng Y, Li D, Guo Y, Hu X, Lin Y, Bu P, Li D. N-methyladenosine modification of MALAT1 promotes metastasis via reshaping nuclear speckles. Developmental Cell. PMID 33609462 DOI: 10.1016/j.devcel.2021.01.015   
2021 Mou T, Pawitan Y, Stahl M, Vesterlund M, Deng W, Jafari R, Bohlin A, Österroos A, Siavelis L, Bäckvall H, Erkers T, Kiviluoto S, Seashore-Ludlow B, Östling P, Orre LM, et al. The transcriptome-wide landscape of molecular subtype-specific mRNA expression profiles in acute myeloid leukemia. American Journal of Hematology. PMID 33625756 DOI: 10.1002/ajh.26141   
2021 Liu N, Neuenkirchen N, Zhong M, Lin H. Genome-wide mapping of Piwi association with specific loci in Drosophila ovaries. G3 (Bethesda, Md.). 11. PMID 33609367 DOI: 10.1093/g3journal/jkaa059   
2021 Liu H, Gong Z, Li K, Zhang Q, Xu Z, Xu Y. SRPK1/2 and PP1α exert opposite functions by modulating SRSF1-guided MKNK2 alternative splicing in colon adenocarcinoma. Journal of Experimental & Clinical Cancer Research : Cr. 40: 75. PMID 33602301 DOI: 10.1186/s13046-021-01877-y   
2021 Zhang H, Song M, Guo J, Ma J, Qiu M, Yang Z. The function of non-coding RNAs in idiopathic pulmonary fibrosis. Open Medicine (Warsaw, Poland). 16: 481-490. PMID 33817326 DOI: 10.1515/med-2021-0231   
2021 Wang J, Zhang L, Zeng A, Xia D, Yu J, Yu G. DeepIII: Predicting isoform-isoform interactions by deep neural networks and data fusion. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33764878 DOI: 10.1109/TCBB.2021.3068875   
2021 Wood KA, Eadsforth MA, Newman WG, O'Keefe RT. The Role of the U5 snRNP in Genetic Disorders and Cancer. Frontiers in Genetics. 12: 636620. PMID 33584830 DOI: 10.3389/fgene.2021.636620   
2021 Shevtsov-Tal S, Best C, Matan R, Aldrin Chandran S, Brown GG, Ostersetzer-Biran O. nMAT3 is an essential maturase splicing factor required for holo-complex I biogenesis and embryo-development in Arabidopsis thaliana plants. The Plant Journal : For Cell and Molecular Biology. PMID 33683754 DOI: 10.1111/tpj.15225   
2021 Takafuji S, Mori T, Nishimura N, Yamamoto N, Uemura S, Nozu K, Terui K, Toki T, Ito E, Muramatsu H, Takahashi Y, Matsuo M, Yamamura T, Iijima K. Usefulness of functional splicing analysis to confirm precise disease pathogenesis in Diamond-Blackfan anemia caused by intronic variants in . Pediatric Hematology and Oncology. 1-16. PMID 33622161 DOI: 10.1080/08880018.2021.1887984   
2021 Kathare PK, Huq E. Light-regulated pre-mRNA splicing in plants. Current Opinion in Plant Biology. 63: 102037. PMID 33823333 DOI: 10.1016/j.pbi.2021.102037   
2021 Emery A, Swanstrom R. HIV-1: To Splice or Not to Splice, That Is the Question. Viruses. 13. PMID 33530363 DOI: 10.3390/v13020181   
2021 Truty R, Ouyang K, Rojahn S, Garcia S, Colavin A, Hamlington B, Freivogel M, Nussbaum RL, Nykamp K, Aradhya S. Spectrum of splicing variants in disease genes and the ability of RNA analysis to reduce uncertainty in clinical interpretation. American Journal of Human Genetics. PMID 33743207 DOI: 10.1016/j.ajhg.2021.03.006   
2021 Rentzsch P, Schubach M, Shendure J, Kircher M. CADD-Splice-improving genome-wide variant effect prediction using deep learning-derived splice scores. Genome Medicine. 13: 31. PMID 33618777 DOI: 10.1186/s13073-021-00835-9   
2021 Kumar S, Mohapatra T. Deciphering Epitranscriptome: Modification of mRNA Bases Provides a New Perspective for Post-transcriptional Regulation of Gene Expression. Frontiers in Cell and Developmental Biology. 9: 628415. PMID 33816473 DOI: 10.3389/fcell.2021.628415   
2021 Wang J, Wang C, Li L, Yang L, Wang S, Ning X, Gao S, Ren L, Chaulagain A, Tang J, Wang T. Alternative splicing: An important regulatory mechanism in colorectal carcinoma. Molecular Carcinogenesis. PMID 33629774 DOI: 10.1002/mc.23291   
2021 Cho S, Lee G, Pickering BF, Jang C, Park JH, He L, Mathur L, Kim SS, Jung S, Tang HW, Monette S, Rabinowitz JD, Perrimon N, Jaffrey SR, Blenis J. mTORC1 promotes cell growth via mA-dependent mRNA degradation. Molecular Cell. PMID 33756105 DOI: 10.1016/j.molcel.2021.03.010   
2021 Xie W, Zhu H, Zhao M, Wang L, Li S, Zhao C, Zhou Y, Zhu B, Jiang X, Liu W, Ren C. Crucial roles of different RNA-binding hnRNP proteins in Stem Cells. International Journal of Biological Sciences. 17: 807-817. PMID 33767590 DOI: 10.7150/ijbs.55120   
2021 Holliday M, Singer ES, Ross SB, Lim S, Lal S, Ingles J, Semsarian C, Bagnall RD. Transcriptome Sequencing of Patients with Hypertrophic Cardiomyopathy Reveals Novel Splice-altering Variants in . Circulation. Genomic and Precision Medicine. PMID 33657327 DOI: 10.1161/CIRCGEN.120.003202   
2021 Zhang D, Chen C, Wang H, Niu E, Zhao P, Fang S, Zhu G, Shang X, Guo W. Cotton Fiber Development Requires the Pentatricopeptide Repeat Protein GhIm for Splicing of Mitochondrial nad7 mRNA. Genetics. 217: 1-17. PMID 33683356 DOI: 10.1093/genetics/iyaa017   
2021 Morais P, Adachi H, Yu YT. Spliceosomal snRNA Epitranscriptomics. Frontiers in Genetics. 12: 652129. PMID 33737950 DOI: 10.3389/fgene.2021.652129   
2021 Palmisano A, Vural S, Zhao Y, Sonkin D. MutSpliceDB: A database of splice sites variants with RNA-seq based evidence on effects on splicing. Human Mutation. PMID 33600011 DOI: 10.1002/humu.24185   
2021 Zheng M, Chen X, Cui Y, Li W, Dai H, Yue Q, Zhang H, Zheng Y, Guo X, Zhu H. TULP2, a New RNA-Binding Protein, Is Required for Mouse Spermatid Differentiation and Male Fertility. Frontiers in Cell and Developmental Biology. 9: 623738. PMID 33763418 DOI: 10.3389/fcell.2021.623738   
2021 Ing A, Wlodaver A, Kirschmann D, Toledo E, McCabe C, Kadri S, McIntyre MK, Salazar J, Firestein K, Charrow J, Sanders V, Laguna T, Yap KL. Transcript analysis for variant classification resolution in a child with primary ciliary dyskinesia. Cold Spring Harbor Molecular Case Studies. 7. PMID 33608380 DOI: 10.1101/mcs.a005363   
2021 Wang J. Integrative analyses of transcriptome data reveal the mechanisms of post-transcriptional regulation. Briefings in Functional Genomics. PMID 33615339 DOI: 10.1093/bfgp/elab004   
2021 Allenspach EJ, Soveg F, Finn LS, So L, Gorman JA, Rosen ABI, Skoda-Smith S, Wheeler MM, Barrow KA, Rich LM, Debley JS, Bamshad MJ, Nickerson DA, Savan R, Torgerson TR, et al. Germline SAMD9L truncation variants trigger global translational repression. The Journal of Experimental Medicine. 218. PMID 33724365 DOI: 10.1084/jem.20201195   
2021 Chatrikhi R, Feeney CF, Pulvino MJ, Alachouzos G, MacRae AJ, Falls Z, Rai S, Brennessel WW, Jenkins JL, Walter MJ, Graubert TA, Samudrala R, Jurica MS, Frontier AJ, Kielkopf CL. A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex. Cell Chemical Biology. PMID 33689684 DOI: 10.1016/j.chembiol.2021.02.007