| Year |
Citation |
Score |
| 2023 |
Zielinski KA, Sui S, Pabit SA, Rivera DA, Wang T, Hu Q, Kashipathy MM, Lisova S, Schaffer CB, Mariani V, Hunter MS, Kupitz C, Moss FR, Poitevin FP, Grant TD, ... Pollack L, et al. RNA structures and dynamics with Å resolution revealed by x-ray free-electron lasers. Science Advances. 9: eadj3509. PMID 37756398 DOI: 10.1126/sciadv.adj3509 |
0.35 |
|
| 2023 |
Zielinski KA, Sui S, Pabit SA, Rivera DA, Wang T, Hu Q, Kashipathy MM, Lisova S, Schaffer CB, Mariani V, Hunter MS, Kupitz C, Moss FR, Poitevin FP, Grant TD, ... Pollack L, et al. RNA structures and dynamics with Å resolution revealed by x-ray free electron lasers. Biorxiv : the Preprint Server For Biology. PMID 37292849 DOI: 10.1101/2023.05.24.541763 |
0.342 |
|
| 2022 |
Chen YL, He W, Kirmizialtin S, Pollack L. Insights into the structural stability of major groove RNA triplexes by WAXS-guided MD simulations. Cell Reports. Physical Science. 3. PMID 35936555 DOI: 10.1016/j.xcrp.2022.100971 |
0.351 |
|
| 2021 |
Mauney AW, Muthurajan UM, Luger K, Pollack L. Solution structure(s) of trinucleosomes from contrast variation SAXS. Nucleic Acids Research. 49: 5028-5037. PMID 34009316 DOI: 10.1093/nar/gkab290 |
0.338 |
|
| 2021 |
He W, Chen YL, Pollack L, Kirmizialtin S. The structural plasticity of nucleic acid duplexes revealed by WAXS and MD. Science Advances. 7. PMID 33893104 DOI: 10.1126/sciadv.abf6106 |
0.39 |
|
| 2020 |
Calvey GD, Katz AM, Zielinski KA, Dzikovski B, Pollack L. Characterizing Enzyme Reactions in Microcrystals for Effective Mix-and-Inject Experiments using X-ray Free-Electron Lasers. Analytical Chemistry. PMID 32955854 DOI: 10.1021/Acs.Analchem.0C02569 |
0.312 |
|
| 2020 |
Chen YL, Pollack L. Machine learning deciphers structural features of RNA duplexes measured with solution X-ray scattering. Iucrj. 7: 870-880. PMID 32939279 DOI: 10.1107/S2052252520008830 |
0.44 |
|
| 2020 |
San Emeterio J, Pollack L. Visualizing a viral genome with contrast variation small angle x-ray scattering. The Journal of Biological Chemistry. PMID 32913117 DOI: 10.1074/Jbc.Ra120.013961 |
0.438 |
|
| 2020 |
Kelly JA, Olson AN, Neupane K, Munshi S, Emeterio JS, Pollack L, Woodside MT, Dinman JD. Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 32587971 DOI: 10.1101/2020.03.13.991083 |
0.551 |
|
| 2020 |
Kelly JA, Olson AN, Neupane K, Munshi S, San Emeterio J, Pollack L, Woodside MT, Dinman JD. Structural and functional conservation of the programmed -1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2). The Journal of Biological Chemistry. PMID 32571880 DOI: 10.1074/Jbc.Ac120.013449 |
0.586 |
|
| 2020 |
Lin DR, Pabit SA, Pollack L. Probing Mg2+-Mediated RNA-RNA Interactions in the Presence of Metabolites Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.551 |
0.353 |
|
| 2020 |
Chen Y, Pollack L. Quantitative Analysis of Salt-Induced RNA Duplex Variations by Wide-Angle X-ray Scattering (WAXS) Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.548 |
0.444 |
|
| 2020 |
Mauney A, Pollack L. DNA Sequence and Histone Core Composition Determine the Unwrapping Pathways in Nucleosomes Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.2706 |
0.302 |
|
| 2020 |
Chen Y, Pollack L. Convolutional Neural Networks Bridge Molecular Models and Solution X-ray Scattering Experiments Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1706 |
0.343 |
|
| 2020 |
Emeterio JS, Pollack L. Viral RNA Folding Studied through Contrast Variation Small Angle- X Ray Scattering Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1319 |
0.448 |
|
| 2019 |
Welty R, Rau M, Pabit S, Dunstan MS, Conn GL, Pollack L, Hall KB. Ribosomal protein L11 selectively stabilizes a tertiary structure of the GTPase Center rRNA domain. Journal of Molecular Biology. PMID 31874150 DOI: 10.1016/j.jmb.2019.12.010 |
0.382 |
|
| 2019 |
Plumridge A, Andresen K, Pollack L. Visualizing Disordered Single-Stranded RNA: Connecting Sequence, Structure, and Electrostatics. Journal of the American Chemical Society. PMID 31804813 DOI: 10.1021/Jacs.9B04461 |
0.65 |
|
| 2019 |
Chen YL, Pollack L. The Salt Dependence of A-Form RNA Duplexes: Structures and Implications. The Journal of Physical Chemistry. B. PMID 31638810 DOI: 10.1021/Acs.Jpcb.9B07502 |
0.452 |
|
| 2019 |
Calvey GD, Katz AM, Pollack L. Microfluidic Mixing Injector Holder Enables Routine Structural Enzymology Measurements with Mix-and-Inject Serial Crystallography Using X-ray Free Electron Lasers. Analytical Chemistry. PMID 31060352 DOI: 10.1021/Acs.Analchem.9B00311 |
0.352 |
|
| 2019 |
San Emeterio J, Pollack L. Virus Dynamics Studied by Time-Resolved Small Angle X-Ray Scattering Biophysical Journal. 116: 431a. DOI: 10.1016/J.Bpj.2018.11.2321 |
0.378 |
|
| 2019 |
Pabit SA, Katz AM, Calvey GD, Pollack L. Time-Resolved Contrast Variation SAXS for Studying RNA-Protein Interactions Biophysical Journal. 116: 319a-320a. DOI: 10.1016/J.Bpj.2018.11.1733 |
0.366 |
|
| 2019 |
Mauney A, Tokuda J, Chen Y, Pollack L. DNA Sequence and Histone Core Composition Control the Unwrapping of DNA from Nucleosome Core Particles Biophysical Journal. 116: 214a. DOI: 10.1016/J.Bpj.2018.11.1179 |
0.317 |
|
| 2018 |
Chen YL, Lee T, Elber R, Pollack L. Conformations of an RNA Helix-Junction-Helix Construct Revealed by SAXS Refinement of MD Simulations. Biophysical Journal. PMID 30558889 DOI: 10.1016/J.Bpj.2018.11.020 |
0.447 |
|
| 2018 |
Chen YL, Sutton JL, Pollack L. How the Conformations of an Internal Junction Contribute to Fold an RNA Domain. The Journal of Physical Chemistry. B. PMID 30285445 DOI: 10.1021/Acs.Jpcb.8B07262 |
0.424 |
|
| 2018 |
Welty R, Pabit SA, Katz AM, Calvey GD, Pollack L, Hall KB. Divalent ions tune the kinetics of a bacterial GTPase Center rRNA folding transition from secondary to tertiary structure. Rna (New York, N.Y.). PMID 30254137 DOI: 10.1261/Rna.068361.118 |
0.433 |
|
| 2018 |
Mauney AW, Tokuda JM, Gloss LM, Gonzalez O, Pollack L. Local DNA Sequence Controls Asymmetry of DNA Unwrapping from Nucleosome Core Particles. Biophysical Journal. PMID 30072033 DOI: 10.1016/J.Bpj.2018.07.009 |
0.419 |
|
| 2018 |
Tokuda JM, Ren R, Levendosky RF, Tay RJ, Yan M, Pollack L, Bowman GD. The ATPase motor of the Chd1 chromatin remodeler stimulates DNA unwrapping from the nucleosome. Nucleic Acids Research. 46: 4978-4990. PMID 29850894 DOI: 10.1093/Nar/Gky206 |
0.394 |
|
| 2018 |
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L. Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Research. PMID 29762712 DOI: 10.1093/Nar/Gky363 |
0.444 |
|
| 2018 |
Plumridge A, Katz AM, Calvey GD, Elber R, Kirmizialtin S, Pollack L. Time-Resolved SAXS and Ensemble Modelling Reveal Magnesium Orchestration across an RNA Folding Landscape Biophysical Journal. 114: 433a. DOI: 10.1016/J.Bpj.2017.11.2399 |
0.367 |
|
| 2018 |
Chen Y, Lee T, Pollack L, Elber R. Understanding an RNA Helix-junction-Helix Construct by SAXS Refinement of MD Models Biophysical Journal. 114: 433a. DOI: 10.1016/J.Bpj.2017.11.2398 |
0.36 |
|
| 2017 |
Sun Y, Roznowski AP, Tokuda JM, Klose T, Mauney A, Pollack L, Fane BA, Rossmann MG. Structural changes of tailless bacteriophage ΦX174 during penetration of bacterial cell walls. Proceedings of the National Academy of Sciences of the United States of America. PMID 29229840 DOI: 10.1073/Pnas.1716614114 |
0.358 |
|
| 2017 |
Plumridge A, Meisburger SP, Andresen K, Pollack L. The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Research. PMID 28334825 DOI: 10.1093/Nar/Gkx140 |
0.8 |
|
| 2017 |
Oberthuer D, Knoška J, Wiedorn MO, Beyerlein KR, Bushnell DA, Kovaleva EG, Heymann M, Gumprecht L, Kirian RA, Barty A, Mariani V, Tolstikova A, Adriano L, Awel S, Barthelmess M, ... ... Pollack L, et al. Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific Reports. 7: 44628. PMID 28300169 DOI: 10.1038/Srep44628 |
0.342 |
|
| 2017 |
Kupitz C, Olmos JL, Holl M, Tremblay L, Pande K, Pandey S, Oberthür D, Hunter M, Liang M, Aquila A, Tenboer J, Calvey G, Katz A, Chen Y, Wiedorn MO, ... ... Pollack L, et al. Structural enzymology using X-ray free electron lasers. Structural Dynamics (Melville, N.Y.). 4: 044003. PMID 28083542 DOI: 10.1063/1.4972069 |
0.343 |
|
| 2017 |
Katz AM, Tolokh IS, Pabit SA, Baker N, Onufriev AV, Pollack L. Spermine Condenses DNA, but Not RNA Duplexes. Biophysical Journal. 112: 22-30. PMID 28076812 DOI: 10.1016/J.Bpj.2016.11.018 |
0.475 |
|
| 2017 |
Pollack L. Pioneering new methods for exploring macromolecular dynamics with X-rays Acta Crystallographica Section a Foundations and Advances. 73: a226-a226. DOI: 10.1107/S0108767317097781 |
0.314 |
|
| 2017 |
Chen Y, Pabit SA, Katz AM, Pollack L. Using WAXS to Study RNA Conformations Biophysical Journal. 112: 580a. DOI: 10.1016/J.Bpj.2016.11.3123 |
0.51 |
|
| 2017 |
Pabit SA, Tokuda JM, Calvey GD, Katz AM, Chen Y, Pollack L. Probing Manganese Ion Distributions Around Nucleic Acids using Small Angle X-Ray Scattering Biophysical Journal. 112: 579a-580a. DOI: 10.1016/J.Bpj.2016.11.3120 |
0.47 |
|
| 2017 |
Plumridge A, Meisburger S, Pollack L. Conformations of Single-Stranded Nucleic Acids in Solution Biophysical Journal. 112: 473a-474a. DOI: 10.1016/J.Bpj.2016.11.2542 |
0.689 |
|
| 2017 |
Chen Y, Tokuda J, Topping T, Meisburger S, Pabit S, Gloss L, Pollack L. Asymmetric DNA Unwrapping Drives Sequential Dimer Release in Nucleosomes Biophysical Journal. 112: 370a-371a. DOI: 10.1016/J.Bpj.2016.11.2011 |
0.701 |
|
| 2016 |
Plumridge A, Meisburger SP, Pollack L. Visualizing single-stranded nucleic acids in solution. Nucleic Acids Research. PMID 28034955 DOI: 10.1093/Nar/Gkw1297 |
0.742 |
|
| 2016 |
Chen Y, Tokuda JM, Topping T, Meisburger SP, Pabit SA, Gloss LM, Pollack L. Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core. Proceedings of the National Academy of Sciences of the United States of America. PMID 28028239 DOI: 10.1073/Pnas.1611118114 |
0.707 |
|
| 2016 |
Calvey GD, Katz AM, Schaffer CB, Pollack L. Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers. Structural Dynamics (Melville, N.Y.). 3: 054301. PMID 27679802 DOI: 10.1063/1.4961971 |
0.37 |
|
| 2016 |
Tokuda JM, Pabit SA, Pollack L. Protein-DNA and ion-DNA interactions revealed through contrast variation SAXS. Biophysical Reviews. 8: 139-149. PMID 27551324 DOI: 10.1007/S12551-016-0196-8 |
0.482 |
|
| 2016 |
Drozdetski AV, Tolokh IS, Pollack L, Baker N, Onufriev AV. Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA. Physical Review Letters. 117: 028101. PMID 27447528 DOI: 10.1103/Physrevlett.117.028101 |
0.474 |
|
| 2016 |
Tolokh IS, Drozdetski AV, Pollack L, Baker NA, Onufriev AV. Multi-shell model of ion-induced nucleic acid condensation. The Journal of Chemical Physics. 144: 155101. PMID 27389241 DOI: 10.1063/1.4945382 |
0.347 |
|
| 2016 |
Nguyen HT, Pabit SA, Pollack L, Case DA. Extracting water and ion distributions from solution x-ray scattering experiments. The Journal of Chemical Physics. 144: 214105. PMID 27276943 DOI: 10.1063/1.4953037 |
0.417 |
|
| 2016 |
Pabit SA, Katz AM, Tolokh IS, Drozdetski A, Baker N, Onufriev AV, Pollack L. Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations. The Journal of Chemical Physics. 144: 205102. PMID 27250330 DOI: 10.1063/1.4950814 |
0.481 |
|
| 2016 |
Chen Y, Pollack L. SAXS studies of RNA: structures, dynamics, and interactions with partners. Wiley Interdisciplinary Reviews. Rna. PMID 27071649 DOI: 10.1002/Wrna.1349 |
0.451 |
|
| 2016 |
Sushko ML, Thomas DG, Pabit SA, Pollack L, Onufriev AV, Baker NA. The Role of Correlation and Solvation in Ion Interactions with B-DNA. Biophysical Journal. 110: 315-26. PMID 26789755 DOI: 10.1016/J.Bpj.2015.12.011 |
0.436 |
|
| 2016 |
Tolokh IS, Drozdetski A, Pabit SA, Katz AM, Pollack L, Baker NA, Onufriev AV. Condensation of Nucleic Acids by Multivalent Ions: Sequence Dependence and the Curious Case of RNA Biophysical Journal. 110: 409a. DOI: 10.1016/J.Bpj.2015.11.2208 |
0.442 |
|
| 2015 |
Sutton JL, Pollack L. Tuning RNA Flexibility with Helix Length and Junction Sequence. Biophysical Journal. 109: 2644-53. PMID 26682821 DOI: 10.1016/J.Bpj.2015.10.039 |
0.411 |
|
| 2015 |
Hopkins JB, Katz AM, Meisburger SP, Warkentin MA, Thorne RE, Pollack L. A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS. Journal of Applied Crystallography. 48: 227-237. PMID 26089749 DOI: 10.1107/S1600576714027782 |
0.683 |
|
| 2015 |
Meisburger SP, Pabit SA, Pollack L. Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements. Biophysical Journal. 108: 2886-95. PMID 26083928 DOI: 10.1016/J.Bpj.2015.05.006 |
0.751 |
|
| 2015 |
Hopkins JB, Katz AM, Meisburger SP, Warkentin MA, Thorne RE, Pollack L. A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS Journal of Applied Crystallography. 48: 227-237. DOI: 10.1107/S1600576714027782 |
0.608 |
|
| 2015 |
Tokuda JM, Chen Y, Topping T, Gloss LM, Pollack L. Using Contrast Variation with SAXS to Visualize DNA Dissociation from Nucleosome Core Particles Biophysical Journal. 108: 75a. DOI: 10.1016/J.Bpj.2014.11.442 |
0.46 |
|
| 2015 |
Katz AM, Hopkins JB, Meisburger SP, Warkentin MA, Thorne RE, Pollack L. Fixed Path Length Sample Holders Enable Robust Cryosaxs Measurements from Sub-Microliter Sample Volumes Biophysical Journal. 108: 620a. DOI: 10.1016/J.Bpj.2014.11.3372 |
0.689 |
|
| 2015 |
Sutton J, Pollack L. RNA Flexibility Depends on Structural Context Biophysical Journal. 108: 27a. DOI: 10.1016/J.Bpj.2014.11.174 |
0.467 |
|
| 2015 |
Pabit SA, Katz AM, Pollack L. Exploring RNA Condensation Biophysical Journal. 108: 238a. DOI: 10.1016/J.Bpj.2014.11.1317 |
0.507 |
|
| 2015 |
Chen Y, Tokuda JM, Topping T, Sutton JL, Meisburger SP, Pabit SA, Gloss LM, Pollack L. Asymmetric Nucleosome Disassembly with Disrupted Histones Revealed by Time Resolved Small Angle X-Ray Scattering with Contrast Variation Biophysical Journal. 108: 15a. DOI: 10.1016/J.Bpj.2014.11.108 |
0.743 |
|
| 2014 |
Nguyen HT, Pabit SA, Meisburger SP, Pollack L, Case DA. Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids. The Journal of Chemical Physics. 141: 22D508. PMID 25494779 DOI: 10.1063/1.4896220 |
0.731 |
|
| 2014 |
Wang D, Weierstall U, Pollack L, Spence J. Double-focusing mixing jet for XFEL study of chemical kinetics. Journal of Synchrotron Radiation. 21: 1364-6. PMID 25343806 DOI: 10.1107/S160057751401858X |
0.332 |
|
| 2014 |
Tolokh IS, Pabit SA, Katz AM, Chen Y, Drozdetski A, Baker N, Pollack L, Onufriev AV. Why double-stranded RNA resists condensation. Nucleic Acids Research. 42: 10823-31. PMID 25123663 DOI: 10.1093/Nar/Gku756 |
0.475 |
|
| 2014 |
Chen Y, Tokuda JM, Topping T, Sutton JL, Meisburger SP, Pabit SA, Gloss LM, Pollack L. Revealing transient structures of nucleosomes as DNA unwinds. Nucleic Acids Research. 42: 8767-76. PMID 24990379 DOI: 10.1093/Nar/Gku562 |
0.728 |
|
| 2014 |
Hopkins J, Katz A, Meisburger S, Warkentin M, Gillilan R, Pollack L, Thorne R. CryoSAXS as a Method for Measuring Low Resolution Macromolecular Structure Acta Crystallographica Section a Foundations and Advances. 70: C408-C408. DOI: 10.1107/S2053273314095916 |
0.401 |
|
| 2014 |
Pollack L. ASAXS quantifies counterion distributions around DNA and RNA Acta Crystallographica Section a Foundations and Advances. 70: C1579-C1579. DOI: 10.1107/S2053273314084204 |
0.467 |
|
| 2014 |
Van Slyke AL, Wang J, Singh A, Pollack L, Zipfel WR. Fast Binding Kinetics of RNA Aptamers Measured using a Novel Microfluidic Mixer Biophysical Journal. 106: 796a. DOI: 10.1016/J.Bpj.2013.11.4364 |
0.321 |
|
| 2014 |
Meisburger S, Sutton J, Chen H, Andresen K, Pollack L. Sorting Out the Structure of Single-Stranded DNA Biophysical Journal. 106: 439a. DOI: 10.1016/J.Bpj.2013.11.2474 |
0.808 |
|
| 2013 |
Vaidya AT, Top D, Manahan CC, Tokuda JM, Zhang S, Pollack L, Young MW, Crane BR. Flavin reduction activates Drosophila cryptochrome. Proceedings of the National Academy of Sciences of the United States of America. 110: 20455-60. PMID 24297896 DOI: 10.1073/Pnas.1313336110 |
0.301 |
|
| 2013 |
Meisburger SP, Sutton JL, Chen H, Pabit SA, Kirmizialtin S, Elber R, Pollack L. Polyelectrolyte properties of single stranded DNA measured using SAXS and single-molecule FRET: Beyond the wormlike chain model. Biopolymers. 99: 1032-45. PMID 23606337 DOI: 10.1002/Bip.22265 |
0.72 |
|
| 2013 |
Grigg JC, Chen Y, Grundy FJ, Henkin TM, Pollack L, Ke A. T box RNA decodes both the information content and geometry of tRNA to affect gene expression Proceedings of the National Academy of Sciences of the United States of America. 110: 7240-7245. PMID 23589841 DOI: 10.1073/Pnas.1222214110 |
0.348 |
|
| 2013 |
Pabit SA, Sutton JL, Chen H, Pollack L. Role of ion valence in the submillisecond collapse and folding of a small RNA domain. Biochemistry. 52: 1539-46. PMID 23398396 DOI: 10.1021/Bi3016636 |
0.408 |
|
| 2013 |
Meisburger SP, Warkentin M, Chen H, Hopkins JB, Gillilan RE, Pollack L, Thorne RE. Breaking the radiation damage limit with Cryo-SAXS. Biophysical Journal. 104: 227-36. PMID 23332075 DOI: 10.1016/J.Bpj.2012.11.3817 |
0.716 |
|
| 2013 |
Meisburger SP, Warkentin M, Chen H, Hopkins JB, Katz A, Gillilan RE, Thorne RE, Pollack L. Introducing Cryo-SAXS for Measuring Low Resolution Macromolecular Structure without Radiation Damage Biophysical Journal. 104: 502a. DOI: 10.1016/J.Bpj.2012.11.2769 |
0.714 |
|
| 2013 |
Sutton JL, Meisburger SP, Chen H, Pollack L. Global Studies of Single-Stranded Nucleic Acid Conformation Biophysical Journal. 104: 411a. DOI: 10.1016/J.Bpj.2012.11.2292 |
0.744 |
|
| 2013 |
Pabit SA, Sutton JL, Chen H, Meisburger SP, Pollack L. The Role of Ionic Strength and Ion Valence in RNA Collapse and Folding Biophysical Journal. 104: 411a. DOI: 10.1016/J.Bpj.2012.11.2290 |
0.728 |
|
| 2013 |
Katz A, Chen Y, Pollack L. Duplex RNA and DNA/RNA Hybrid Condensation by Multivalent Ions Biophysical Journal. 104: 260a-261a. DOI: 10.1016/J.Bpj.2012.11.1463 |
0.482 |
|
| 2013 |
Chen Y, Hyun Nam K, Ke A, Pollack L. A SAXS Study of the CRISPR Associated Gene (Cas) Csn2 in the Presence and Absence of Calcium Ions Biophysical Journal. 104: 252a-253a. DOI: 10.1016/J.Bpj.2012.11.1420 |
0.388 |
|
| 2013 |
Tokuda J, Topping T, Gloss L, Pollack L. Visualizing DNA Disassociation from the Nucleosome Core Particle Biophysical Journal. 104: 198a. DOI: 10.1016/J.Bpj.2012.11.1116 |
0.471 |
|
| 2012 |
Patel S, Blose JM, Sokoloski JE, Pollack L, Bevilacqua PC. Specificity of the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR for double-stranded RNA: insights from thermodynamics and small-angle X-ray scattering. Biochemistry. 51: 9312-22. PMID 23140277 DOI: 10.1021/Bi300935P |
0.44 |
|
| 2012 |
Schlatterer JC, Wieder MS, Jones CD, Pollack L, Brenowitz M. Pyrite footprinting of RNA. Biochemical and Biophysical Research Communications. 425: 374-8. PMID 22842460 DOI: 10.1016/J.Bbrc.2012.07.100 |
0.399 |
|
| 2012 |
Kirmizialtin S, Pabit SA, Meisburger SP, Pollack L, Elber R. RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations. Biophysical Journal. 102: 819-28. PMID 22385853 DOI: 10.1016/J.Bpj.2012.01.013 |
0.735 |
|
| 2012 |
Yoo TY, Meisburger SP, Hinshaw J, Pollack L, Haran G, Sosnick TR, Plaxco K. Small-angle X-ray scattering and single-molecule FRET spectroscopy produce highly divergent views of the low-denaturant unfolded state. Journal of Molecular Biology. 418: 226-36. PMID 22306460 DOI: 10.1016/J.Jmb.2012.01.016 |
0.723 |
|
| 2012 |
Chen H, Meisburger SP, Pabit SA, Sutton JL, Webb WW, Pollack L. Ionic strength-dependent persistence lengths of single-stranded RNA and DNA. Proceedings of the National Academy of Sciences of the United States of America. 109: 799-804. PMID 22203973 DOI: 10.1073/Pnas.1119057109 |
0.774 |
|
| 2012 |
Meisburger S, Chen H, Pabit SA, Sutton JL, Webb WW, Pollack L. Solution Structures of Flexible RNA Molecules in Mono- and Divalent Salt Biophysical Journal. 102: 646a. DOI: 10.1016/J.Bpj.2011.11.3518 |
0.785 |
|
| 2012 |
Pabit SA, Sutton JL, Chen H, Zipfel WR, Webb WW, Pollack L. Sub-Millisecond RNA Collapse Observed in a Microfluidic Mixer Biophysical Journal. 102: 645a. DOI: 10.1016/J.Bpj.2011.11.3509 |
0.572 |
|
| 2011 |
Blose JM, Pabit SA, Meisburger SP, Li L, Jones CD, Pollack L. Effects of a protecting osmolyte on the ion atmosphere surrounding DNA duplexes. Biochemistry. 50: 8540-7. PMID 21882885 DOI: 10.1021/Bi200710M |
0.755 |
|
| 2011 |
Jones CD, Schlatterer JC, Brenowitz M, Pollack L. A microfluidic device that generates hydroxyl radicals to probe the solvent accessible surface of nucleic acids. Lab On a Chip. 11: 3458-64. PMID 21863183 DOI: 10.1039/C1Lc20280D |
0.355 |
|
| 2011 |
Li L, Pabit SA, Meisburger SP, Pollack L. Double-stranded RNA resists condensation. Physical Review Letters. 106: 108101. PMID 21469837 DOI: 10.1103/Physrevlett.106.108101 |
0.758 |
|
| 2011 |
Pollack L. SAXS studies of ion-nucleic acid interactions. Annual Review of Biophysics. 40: 225-42. PMID 21332357 DOI: 10.1146/Annurev-Biophys-042910-155349 |
0.464 |
|
| 2011 |
Pollack L. Time resolved SAXS and RNA folding. Biopolymers. 95: 543-9. PMID 21328311 DOI: 10.1002/Bip.21604 |
0.423 |
|
| 2011 |
Li L, Pabit S, Meisburger S, Pollack L. Comparing Double-Strand DNA and RNA Condensation Biophysical Journal. 100: 77a. DOI: 10.1016/J.Bpj.2010.12.630 |
0.761 |
|
| 2011 |
Blose JM, Pabit SA, Meisburger SP, Li L, Jones CD, Pollack L. The Influence of Osmolytes on Electrostatic Interactions Among DNA Duplexes Biophysical Journal. 100: 77a. DOI: 10.1016/J.Bpj.2010.12.628 |
0.721 |
|
| 2011 |
Wang Z, Huang Y, Li L, Thomas DG, Pollack L, Onufriev A, Baker NA. Improving Electrostatic Descriptions of Ions Around Double-Stranded DNA Biophysical Journal. 100: 77a. DOI: 10.1016/J.Bpj.2010.12.627 |
0.418 |
|
| 2011 |
Pabit SA, Meisburger SP, Li L, Blose JM, Jones CD, Pollack L. Characterization of DNA and RNA Ion Atmospheres Using Multiple-Energy Asaxs Biophysical Journal. 100: 77a. DOI: 10.1016/J.Bpj.2010.12.626 |
0.757 |
|
| 2011 |
Meisburger S, Brooks K, Pabit S, Li L, Blose J, Hampel K, Pollack L. Measuring the Dimensions of a Compact Kinetic Intermediate in the Folding Pathway of the GlmS Ribozyme Biophysical Journal. 100: 237a. DOI: 10.1016/J.Bpj.2010.12.1510 |
0.747 |
|
| 2011 |
Chen H, Pollack L, Webb WW. Flexibilities of Single-Stranded Nucleic Acids Measured by Single Molecule FRET Biophysical Journal. 100: 176a. DOI: 10.1016/J.Bpj.2010.12.1180 |
0.591 |
|
| 2010 |
Pabit SA, Meisburger SP, Li L, Blose JM, Jones CD, Pollack L. Counting ions around DNA with anomalous small-angle X-ray scattering. Journal of the American Chemical Society. 132: 16334-6. PMID 21047071 DOI: 10.1021/Ja107259Y |
0.734 |
|
| 2010 |
Pollack L, Webb WW. Complex molecular dynamics in the spotlight. Nature Biotechnology. 28: 564-5. PMID 20531335 DOI: 10.1038/Nbt0610-564 |
0.435 |
|
| 2010 |
Wong GC, Pollack L. Electrostatics of strongly charged biological polymers: ion-mediated interactions and self-organization in nucleic acids and proteins. Annual Review of Physical Chemistry. 61: 171-89. PMID 20055668 DOI: 10.1146/Annurev.Physchem.58.032806.104436 |
0.36 |
|
| 2010 |
Li L, Pabbit SA, Meisburger SP, Lamb JS, Pollack L. Measuring DNA Condensation Driven by Cobalt Hexamine Biophysical Journal. 98: 657a. DOI: 10.1016/J.Bpj.2009.12.3605 |
0.766 |
|
| 2010 |
Chen H, Pabit SA, Pollack L, Webb WW. Temperature-Dependent Single-Molecule Fluorescence Measurements of RNA Motifs Melting Biophysical Journal. 98: 471a. DOI: 10.1016/J.Bpj.2009.12.2567 |
0.535 |
|
| 2010 |
Pabit SA, Li L, Meisburger SP, Lamb JS, Qiu X, Pollack L. The Role of Helix Topology and Counterion Distributions in RNA Interactions Biophysical Journal. 98: 471a. DOI: 10.1016/J.Bpj.2009.12.2566 |
0.814 |
|
| 2009 |
Pabit SA, Finkelstein KD, Pollack L. Using anomalous small angle X-ray scattering to probe the ion atmosphere around nucleic acids. Methods in Enzymology. 469: 391-410. PMID 20946800 DOI: 10.1016/S0076-6879(09)69019-4 |
0.441 |
|
| 2009 |
Pollack L, Doniach S. Time-resolved X-ray scattering and RNA folding. Methods in Enzymology. 469: 253-68. PMID 20946793 DOI: 10.1016/S0076-6879(09)69012-1 |
0.465 |
|
| 2009 |
Lamb JS, Zoltowski BD, Pabit SA, Li L, Crane BR, Pollack L. Illuminating solution responses of a LOV domain protein with photocoupled small-angle X-ray scattering. Journal of Molecular Biology. 393: 909-19. PMID 19712683 DOI: 10.1016/J.Jmb.2009.08.045 |
0.716 |
|
| 2009 |
Pabit SA, Qiu X, Lamb JS, Li L, Meisburger SP, Pollack L. Both helix topology and counterion distribution contribute to the more effective charge screening in dsRNA compared with dsDNA. Nucleic Acids Research. 37: 3887-96. PMID 19395592 DOI: 10.1093/Nar/Gkp257 |
0.826 |
|
| 2009 |
Pabit SA, Qiu X, Lamb JS, Li L, Pollack L. Comparing Short dsRNA and dsDNA: Charge Screening Efficiency and Counterion Distribution Biophysical Journal. 96: 578a. DOI: 10.1016/J.Bpj.2008.12.3021 |
0.769 |
|
| 2009 |
Lamb JS, Zoltowski BD, Palin SA, Li L, Crane BR, Pollack L. Dimer formation in the blue light sensing protein Vivid Biophysical Journal. 96: 524a. DOI: 10.1016/J.Bpj.2008.12.2705 |
0.691 |
|
| 2008 |
Lamb J, Kwok L, Qiu X, Andresen K, Park HY, Pollack L. Reconstructing three-dimensional shape envelopes from time-resolved small-angle X-ray scattering data. Journal of Applied Crystallography. 41: 1046-1052. PMID 19529835 DOI: 10.1107/S0021889808028264 |
0.794 |
|
| 2008 |
Li L, Pabit SA, Lamb JS, Park HY, Pollack L. Closing the lid on DNA end-to-end stacking interactions. Applied Physics Letters. 92: 223901-2239013. PMID 19488404 DOI: 10.1016/J.Bpj.2008.12.1739 |
0.778 |
|
| 2008 |
Qiu X, Andresen K, Lamb JS, Kwok LW, Pollack L. Abrupt transition from a free, repulsive to a condensed, attractive DNA phase, induced by multivalent polyamine cations. Physical Review Letters. 101: 228101. PMID 19113524 DOI: 10.1103/Physrevlett.101.228101 |
0.8 |
|
| 2008 |
Lamb JS, Zoltowski BD, Pabit SA, Crane BR, Pollack L. Time-resolved dimerization of a PAS-LOV protein measured with photocoupled small angle X-ray scattering. Journal of the American Chemical Society. 130: 12226-7. PMID 18715002 DOI: 10.1021/Ja804236F |
0.717 |
|
| 2008 |
Schlatterer JC, Kwok LW, Lamb JS, Park HY, Andresen K, Brenowitz M, Pollack L. Hinge stiffness is a barrier to RNA folding. Journal of Molecular Biology. 379: 859-70. PMID 18471829 DOI: 10.1016/J.Jmb.2008.04.013 |
0.778 |
|
| 2008 |
Andresen K, Qiu X, Pabit SA, Lamb JS, Park HY, Kwok LW, Pollack L. Mono- and trivalent ions around DNA: a small-angle scattering study of competition and interactions. Biophysical Journal. 95: 287-95. PMID 18339743 DOI: 10.1529/Biophysj.107.123174 |
0.811 |
|
| 2008 |
Park HY, Kim SA, Korlach J, Rhoades E, Kwok LW, Zipfel WR, Waxham MN, Webb WW, Pollack L. Conformational changes of calmodulin upon Ca2+ binding studied with a microfluidic mixer. Proceedings of the National Academy of Sciences of the United States of America. 105: 542-7. PMID 18178620 DOI: 10.1073/Pnas.0710810105 |
0.698 |
|
| 2008 |
Chatterjee N, Andresen K, Thomas M, Pollack L, Kirkland E. A Simple Method for Imaging DNA using SEM Microscopy Today. 16: 38-39. DOI: 10.1017/S1551929500055917 |
0.578 |
|
| 2007 |
Qiu X, Andresen K, Kwok LW, Lamb JS, Park HY, Pollack L. Inter-DNA attraction mediated by divalent counterions. Physical Review Letters. 99: 038104. PMID 17678334 DOI: 10.1103/Physrevlett.99.038104 |
0.818 |
|
| 2007 |
Lamb JS, Cornaby S, Andresen K, Kwok L, Park HY, Qiu X, Smilgies DM, Bilderback DH, Pollack L. Focusing capillary optics for use in solution small-angle X-ray scattering Journal of Applied Crystallography. 40: 193-195. DOI: 10.1107/S0021889806044505 |
0.778 |
|
| 2006 |
Park HY, Qiu X, Rhoades E, Korlach J, Kwok LW, Zipfel WR, Webb WW, Pollack L. Achieving uniform mixing in a microfluidic device: hydrodynamic focusing prior to mixing. Analytical Chemistry. 78: 4465-73. PMID 16808455 DOI: 10.1021/Ac060572N |
0.697 |
|
| 2006 |
Qiu X, Kwok LW, Park HY, Lamb JS, Andresen K, Pollack L. Measuring inter-DNA potentials in solution. Physical Review Letters. 96: 138101. PMID 16712040 DOI: 10.1103/Physrevlett.96.138101 |
0.814 |
|
| 2006 |
Kwok LW, Shcherbakova I, Lamb JS, Park HY, Andresen K, Smith H, Brenowitz M, Pollack L. Concordant exploration of the kinetics of RNA folding from global and local perspectives. Journal of Molecular Biology. 355: 282-93. PMID 16303138 DOI: 10.1016/J.Jmb.2005.10.070 |
0.801 |
|
| 2004 |
Andresen K, Das R, Park HY, Smith H, Kwok LW, Lamb JS, Kirkland EJ, Herschlag D, Finkelstein KD, Pollack L. Spatial distribution of competing ions around DNA in solution. Physical Review Letters. 93: 248103. PMID 15697865 DOI: 10.1103/Physrevlett.93.248103 |
0.808 |
|
| 2003 |
Das R, Kwok LW, Millett IS, Bai Y, Mills TT, Jacob J, Maskel GS, Seifert S, Mochrie SG, Thiyagarajan P, Doniach S, Pollack L, Herschlag D. The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme. Journal of Molecular Biology. 332: 311-9. PMID 12948483 DOI: 10.1016/S0022-2836(03)00854-4 |
0.805 |
|
| 2003 |
Das R, Mills TT, Kwok LW, Maskel GS, Millett IS, Doniach S, Finkelstein KD, Herschlag D, Pollack L. Counterion distribution around DNA probed by solution X-ray scattering. Physical Review Letters. 90: 188103. PMID 12786045 DOI: 10.1103/Physrevlett.90.188103 |
0.821 |
|
| 2002 |
Russell R, Millett IS, Tate MW, Kwok LW, Nakatani B, Gruner SM, Mochrie SG, Pande V, Doniach S, Herschlag D, Pollack L. Rapid compaction during RNA folding. Proceedings of the National Academy of Sciences of the United States of America. 99: 4266-71. PMID 11929997 DOI: 10.1073/Pnas.072589599 |
0.739 |
|
| 2001 |
Pollack L, Tate MW, Finnefrock AC, Kalidas C, Trotter S, Darnton NC, Lurio L, Austin RH, Batt CA, Gruner SM, Mochrie SG. Time resolved collapse of a folding protein observed with small angle x-ray scattering. Physical Review Letters. 86: 4962-5. PMID 11384392 DOI: 10.1103/Physrevlett.86.4962 |
0.752 |
|
| 1999 |
Pollack L, Tate MW, Darnton NC, Knight JB, Gruner SM, Eaton WA, Austin RH. Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering. Proceedings of the National Academy of Sciences of the United States of America. 96: 10115-7. PMID 10468571 DOI: 10.1073/Pnas.96.18.10115 |
0.591 |
|
| 1993 |
Xiao YM, Buchman S, Pollack L, Kleppner D, Greytak TJ. Nuclear relaxation during the formation of H2 from spin-polarized hydrogen. Physical Review. B, Condensed Matter. 48: 15744-15754. PMID 10008127 DOI: 10.1103/Physrevb.48.15744 |
0.594 |
|
| 1992 |
Pollack L, Buchman S, Greytak TJ. Surface studies of spin-polarized atomic hydrogen. Physical Review. B, Condensed Matter. 45: 2993-3002. PMID 10001850 |
0.524 |
|
| 1992 |
Xiao YM, Buchman S, Pollack L, Kleppner D, Greytak TJ. Observation of nonstatistical ortho-para ratio in hydrogen recombination at low temperatures The Journal of Chemical Physics. 96: 4032-4034. DOI: 10.1063/1.461854 |
0.595 |
|
| 1986 |
Bell DA, Hess HF, Kochanski GP, Buchman S, Pollack L, Xiao YM, Kleppner D, Greytak TJ. Relaxation and recombination in spin-polarized atomic hydrogen. Physical Review. B, Condensed Matter. 34: 7670-7697. PMID 9939447 DOI: 10.1103/Physrevb.34.7670 |
0.584 |
|
| 1986 |
Pollack L, Buchman S, Xiao YM, Hess HF, Kochanski GP, Greytak TJ. Direct observation of a two-dimensional gas of spin-polarized atomic hydrogen. Physical Review. B, Condensed Matter. 34: 461-463. PMID 9939287 DOI: 10.1103/Physrevb.34.461 |
0.57 |
|
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