Partha Pratim Mitra - Publications

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Ascoli GA, Huo BX, Mitra PP. Sizing up whole-brain neuronal tracing. Science Bulletin. 67: 883-884. PMID 36546016 DOI: 10.1016/j.scib.2022.01.018  0.763
2020 Banerjee S, Magee L, Wang D, Li X, Huo BX, Jayakumar J, Matho K, Lin MK, Ram K, Sivaprakasam M, Huang J, Wang Y, Mitra PP. Semantic segmentation of microscopic neuroanatomical data by combining topological priors with encoder-decoder deep networks. Nature Machine Intelligence. 2: 585-594. PMID 34604701 DOI: 10.1038/s42256-020-0227-9  0.773
2020 Lee BC, Lin MK, Fu Y, Hata J, Miller MI, Mitra PP. Multimodal Cross-registration and Quantification of Metric Distortions in Marmoset Whole Brain Histology using Diffeomorphic Mappings. The Journal of Comparative Neurology. PMID 32406083 DOI: 10.1002/cne.24946  0.384
2020 Majka P, Bai S, Bakola S, Bednarek S, Chan JM, Jermakow N, Passarelli L, Reser DH, Theodoni P, Worthy KH, Wang XJ, Wójcik DK, Mitra PP, Rosa MGP. Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey. Nature Communications. 11: 1133. PMID 32111833 DOI: 10.1038/S41467-020-14858-0  0.37
2020 Lovell PV, Wirthlin M, Kaser T, Buckner AA, Carleton JB, Snider BR, McHugh AK, Tolpygo A, Mitra PP, Mello CV. ZEBrA - Zebra finch Expression Brain Atlas: a resource for comparative molecular neuroanatomy and brain evolution studies. The Journal of Comparative Neurology. PMID 32037563 DOI: 10.1002/Cne.24879  0.379
2019 Kleinfeld D, Luan L, Mitra PP, Robinson JT, Sarpeshkar R, Shepard K, Xie C, Harris TD. Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain? Neuron. PMID 31495645 DOI: 10.1016/J.Neuron.2019.08.011  0.313
2019 Huo BX, Zeater N, Lin MK, Takahashi YS, Hanada M, Nagashima J, Lee BC, Hata J, Zaheer A, Grünert U, Miller MI, Rosa MGP, Okano H, Martin PR, Mitra PP. Relation of koniocellular layers of dorsal lateral geniculate to inferior pulvinar nuclei in common marmosets. The European Journal of Neuroscience. PMID 31344282 DOI: 10.1111/Ejn.14529  0.742
2019 Wang X, Tucciarone J, Jiang S, Yin F, Wang BS, Wang D, Jia Y, Jia X, Li Y, Yang T, Xu Z, Akram MA, Wang Y, Zeng S, Ascoli GA, ... Mitra P, et al. Genetic Single Neuron Anatomy Reveals Fine Granularity of Cortical Axo-Axonic Cells. Cell Reports. 26: 3145-3159.e5. PMID 30865900 DOI: 10.1016/J.Celrep.2019.02.040  0.313
2019 Chen Y, McElvain LE, Tolpygo AS, Ferrante D, Friedman B, Mitra PP, Karten HJ, Freund Y, Kleinfeld D. An active texture-based digital atlas enables automated mapping of structures and markers across brains. Nature Methods. PMID 30858600 DOI: 10.1038/S41592-019-0328-8  0.409
2019 Miller CT, Hale ME, Okano H, Okabe S, Mitra P. Comparative Principles for Next-Generation Neuroscience. Frontiers in Behavioral Neuroscience. 13: 12. PMID 30787871 DOI: 10.3389/Fnbeh.2019.00012  0.32
2019 Lin MK, Takahashi YS, Huo BX, Hanada M, Nagashima J, Hata J, Tolpygo AS, Ram K, Lee BC, Miller MI, Rosa MG, Sasaki E, Iriki A, Okano H, Mitra P. A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset. Elife. 8. PMID 30720427 DOI: 10.7554/Elife.40042  0.776
2019 Lin MK, Takahashi YS, Huo B, Hanada M, Nagashima J, Hata J, Tolpygo AS, Ram K, Lee BC, Miller MI, Rosa MG, Sasaki E, Iriki A, Okano H, Mitra P. Author response: A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset Elife. DOI: 10.7554/Elife.40042.038  0.763
2018 Lee BC, Tward DJ, Mitra PP, Miller MI. On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. Plos Computational Biology. 14: e1006610. PMID 30586384 DOI: 10.1371/journal.pcbi.1006610  0.311
2018 Majka P, Rosa MGP, Bai S, Chan JM, Huo BX, Jermakow N, Lin MK, Takahashi YS, Wolkowicz IH, Worthy KH, Rajan R, Reser DH, Wójcik DK, Okano H, Mitra PP. Unidirectional monosynaptic connections from auditory areas to the primary visual cortex in the marmoset monkey. Brain Structure & Function. PMID 30288557 DOI: 10.1007/S00429-018-1764-4  0.744
2017 Kim Y, Yang GR, Pradhan K, Venkataraju KU, Bota M, García Del Molino LC, Fitzgerald G, Ram K, He M, Levine JM, Mitra P, Huang ZJ, Wang XJ, Osten P. Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism. Cell. 171: 456-469.e22. PMID 28985566 DOI: 10.1016/J.Cell.2017.09.020  0.393
2017 Li Y, Wang D, Ascoli GA, Mitra P, Wang Y. Metrics for comparing neuronal tree shapes based on persistent homology. Plos One. 12: e0182184. PMID 28809960 DOI: 10.1371/Journal.Pone.0182184  0.314
2016 Majka P, Chaplin TA, Yu HH, Tolpygo A, Mitra PP, Wójcik DK, Rosa MG. Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template. The Journal of Comparative Neurology. PMID 27099164 DOI: 10.1002/Cne.24023  0.411
2016 Jeong M, Kim Y, Kim J, Ferrante DD, Mitra PP, Osten P, Kim D. Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports. 6: 20072. PMID 26830143 DOI: 10.1038/Srep20072  0.301
2015 Liu J, Lee HJ, Weitz AJ, Fang Z, Lin P, Choy M, Fisher R, Pinskiy V, Tolpygo A, Mitra P, Schiff N, Lee JH. Frequency-selective control of cortical and subcortical networks by central thalamus. Elife. 4. PMID 26652162 DOI: 10.7554/Elife.09215  0.35
2015 Pinskiy V, Jones J, Tolpygo AS, Franciotti N, Weber K, Mitra PP. High-Throughput Method of Whole-Brain Sectioning, Using the Tape-Transfer Technique. Plos One. 10: e0102363. PMID 26181725 DOI: 10.1371/journal.pone.0102363  0.336
2015 Okano H, Mitra P. Brain-mapping projects using the common marmoset. Neuroscience Research. 93: 3-7. PMID 25264372 DOI: 10.1016/J.Neures.2014.08.014  0.388
2014 Mitra PP. The circuit architecture of whole brains at the mesoscopic scale. Neuron. 83: 1273-83. PMID 25233311 DOI: 10.1016/j.neuron.2014.08.055  0.403
2014 Grange P, Bohland JW, Okaty BW, Sugino K, Bokil H, Nelson SB, Ng L, Hawrylycz M, Mitra PP. Cell-type-based model explaining coexpression patterns of genes in the brain. Proceedings of the National Academy of Sciences of the United States of America. 111: 5397-402. PMID 24706869 DOI: 10.1073/Pnas.1312098111  0.718
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, ... ... Mitra PP, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. Brain, Behavior and Evolution. 83: 1-8. PMID 24603302 DOI: 10.1159/000360152  0.347
2014 Striedter GF, Belgard TG, Chen CC, Davis FP, Finlay BL, Güntürkün O, Hale ME, Harris JA, Hecht EE, Hof PR, Hofmann HA, Holland LZ, Iwaniuk AN, Jarvis ED, Karten HJ, ... ... Mitra PP, et al. NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species. The Journal of Comparative Neurology. 522: 1445-53. PMID 24596113 DOI: 10.1002/Cne.23568  0.347
2014 Kleinfeld D, Mitra PP. Spectral methods for functional brain imaging. Cold Spring Harbor Protocols. 2014: 248-62. PMID 24591695 DOI: 10.1101/pdb.top081075  0.346
2013 Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, ... ... Mitra PP, et al. The challenge of connecting the dots in the B.R.A.I.N. Neuron. 80: 270-4. PMID 24139032 DOI: 10.1016/J.Neuron.2013.09.008  0.341
2013 Menashe I, Grange P, Larsen EC, Banerjee-Basu S, Mitra PP. Co-expression profiling of autism genes in the mouse brain. Plos Computational Biology. 9: e1003128. PMID 23935468 DOI: 10.1371/journal.pcbi.1003128  0.337
2013 Karten HJ, Brzozowska-Prechtl A, Lovell PV, Tang DD, Mello CV, Wang H, Mitra PP. Digital atlas of the zebra finch (Taeniopygia guttata) brain: a high-resolution photo atlas. The Journal of Comparative Neurology. 521: 3702-15. PMID 23896990 DOI: 10.1002/cne.23443  0.387
2013 Mitra PP, Rosa MG, Karten HJ. Panoptic neuroanatomy: digital microscopy of whole brains and brain-wide circuit mapping. Brain, Behavior and Evolution. 81: 203-5. PMID 23774264 DOI: 10.1159/000350241  0.413
2013 Pinskiy V, Tolpygo AS, Jones J, Weber K, Franciotti N, Mitra PP. A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning. Journal of Neuroscience Methods. 218: 206-13. PMID 23541995 DOI: 10.1016/j.jneumeth.2013.03.004  0.375
2012 Helmstaedter M, Mitra PP. Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology. 22: 162-9. PMID 22221862 DOI: 10.1016/J.Conb.2011.11.010  0.383
2010 Bohland JW, Bokil H, Pathak SD, Lee CK, Ng L, Lau C, Kuan C, Hawrylycz M, Mitra PP. Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy. Methods (San Diego, Calif.). 50: 105-12. PMID 19733241 DOI: 10.1016/j.ymeth.2009.09.001  0.73
2009 Bohland JW, Bokil H, Allen CB, Mitra PP. The brain atlas concordance problem: quantitative comparison of anatomical parcellations. Plos One. 4: e7200. PMID 19787067 DOI: 10.1371/journal.pone.0007200  0.744
2009 Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, ... ... Mitra PP, et al. A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. Plos Computational Biology. 5: e1000334. PMID 19325892 DOI: 10.1371/Journal.Pcbi.1000334  0.722
2009 Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, Bokil H, Mitra PP, Puelles L, Hohmann J, Anderson DJ, et al. An anatomic gene expression atlas of the adult mouse brain. Nature Neuroscience. 12: 356-62. PMID 19219037 DOI: 10.1038/Nn.2281  0.731
2008 Lin JM, Bohland JW, Andrews P, Burns GA, Allen CB, Mitra PP. An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006. Plos One. 3: e2052. PMID 18446237 DOI: 10.1371/Journal.Pone.0002052  0.705
2008 Saar S, Mitra PP. A technique for characterizing the development of rhythms in bird song. Plos One. 3: e1461. PMID 18213370 DOI: 10.1371/journal.pone.0001461  0.317
2007 Valente D, Wang H, Andrews P, Mitra PP, Saar S, Tchernichovski O, Golani I, Benjamini Y. Characterizing animal behavior through audio and video signal processing Ieee Multimedia. 14: 32-41. DOI: 10.1109/Mmul.2007.71  0.315
2006 Bokil HS, Pesaran B, Andersen RA, Mitra PP. A method for detection and classification of events in neural activity. Ieee Transactions On Bio-Medical Engineering. 53: 1678-87. PMID 16916103 DOI: 10.1109/TBME.2006.877802  0.663
2006 Bokil H, Tchernichovsky O, Mitra PP. Dynamic phenotypes: time series analysis techniques for characterizing neuronal and behavioral dynamics. Neuroinformatics. 4: 119-28. PMID 16595862 DOI: 10.1385/NI:4:1:119  0.329
2004 Derégnaucourt S, Mitra PP, Fehér O, Maul KK, Lints TJ, Tchernichovski O. Song development: in search of the error-signal. Annals of the New York Academy of Sciences. 1016: 364-76. PMID 15313785 DOI: 10.1196/Annals.1298.036  0.301
2004 Tchernichovski O, Lints TJ, Deregnaucourt S, Cimenser A, Mitra PP. Studying the song development process: rationale and methods. Annals of the New York Academy of Sciences. 1016: 348-63. PMID 15313784 DOI: 10.1196/Annals.1298.031  0.759
2004 Brown EN, Kass RE, Mitra PP. Multiple neural spike train data analysis: state-of-the-art and future challenges. Nature Neuroscience. 7: 456-61. PMID 15114358 DOI: 10.1038/Nn1228  0.535
2003 Shenoy KV, Meeker D, Cao S, Kureshi SA, Pesaran B, Buneo CA, Batista AP, Mitra PP, Burdick JW, Andersen RA. Neural prosthetic control signals from plan activity. Neuroreport. 14: 591-6. PMID 12657892 DOI: 10.1097/01.wnr.0000063250.41814.39  0.659
2002 Pesaran B, Pezaris JS, Sahani M, Mitra PP, Andersen RA. Temporal structure in neuronal activity during working memory in macaque parietal cortex. Nature Neuroscience. 5: 805-11. PMID 12134152 DOI: 10.1038/nn890  0.654
2002 Wang SS, Mitra PP, Clark DA. How did brains evolve? Nature. 415: 135-135. DOI: 10.1038/415135a  0.347
2001 Clark DA, Mitra PP, Wang SS. Scalable architecture in mammalian brains. Nature. 411: 189-93. PMID 11346794 DOI: 10.1038/35075564  0.367
2000 Tchernichovski O, Nottebohm F, Ho CE, Pesaran B, Mitra PP. A procedure for an automated measurement of song similarity. Animal Behaviour. 59: 1167-1176. PMID 10877896 DOI: 10.1006/anbe.1999.1416  0.608
2000 Ramírez RR, Horenstein C, Schulman J, Jagow R, Mitra P, Kronberg E, Ribary U, Llinás R. Transient and steady-state visual activity in the human brain Neuroimage. 11. DOI: 10.1016/S1053-8119(00)91634-3  0.306
2000 Ribary U, Jeanmonod D, Kronberg E, Schulman J, Suavé K, Ramirez R, Mitra P, Llinás R. Thalamo-cortical spatio-temporal dynamics and its alterations in human brain pathology Neuroimage. 11. DOI: 10.1016/S1053-8119(00)91101-7  0.34
1999 Mitra PP, Pesaran B. Analysis of dynamic brain imaging data. Biophysical Journal. 76: 691-708. PMID 9929474 DOI: 10.1016/S0006-3495(99)77236-X  0.62
1998 Fee MS, Shraiman B, Pesaran B, Mitra PP. The role of nonlinear dynamics of the syrinx in the vocalizations of a songbird. Nature. 395: 67-71. PMID 12071206 DOI: 10.1038/25725  0.62
1997 Prechtl JC, Cohen LB, Pesaran B, Mitra PP, Kleinfeld D. Visual stimuli induce waves of electrical activity in turtle cortex. Proceedings of the National Academy of Sciences of the United States of America. 94: 7621-6. PMID 9207142 DOI: 10.1073/pnas.94.14.7621  0.616
1997 Mitra PP, Ogawa S, Hu X, Uğurbil K. The nature of spatiotemporal changes in cerebral hemodynamics as manifested in functional magnetic resonance imaging. Magnetic Resonance in Medicine. 37: 511-8. PMID 9094072 DOI: 10.1002/Mrm.1910370407  0.3
1995 Mitra PP, Halperin BI. Effects of Finite Gradient-Pulse Widths in Pulsed-Field-Gradient Diffusion Measurements Journal of Magnetic Resonance, Series A. 113: 94-101. DOI: 10.1006/jmra.1995.1060  0.468
1994 Mitra PP, Halperin BI. Understanding far-infrared absorption in the S=1 antiferromagnetic chain compound NENP. Physical Review Letters. 72: 912-915. PMID 10056566 DOI: 10.1103/PhysRevLett.72.912  0.457
1994 Sen PN, Schwartz LM, Mitra PP, Halperin BI. Surface relaxation and the long-time diffusion coefficient in porous media: Periodic geometries. Physical Review. B, Condensed Matter. 49: 215-225. PMID 10009277 DOI: 10.1103/PhysRevB.49.215  0.471
1992 Mitra PP, Halperin BI, Affleck I. Temperature dependence of the electron-spin-resonance spectrum of the chain-end S=1/2 modes in an S=1 antiferromagnetic chain. Physical Review. B, Condensed Matter. 45: 5299-5306. PMID 10000246 DOI: 10.1103/Physrevb.45.5299  0.453
1992 Mitra PP, Halperin BI, Affleck I. Temperature dependence of the electron-spin-resonance spectrum of the chain-end S=1/2 modes in an S=1 antiferromagnetic chain Physical Review B. 45: 5299-5306. DOI: 10.1103/PhysRevB.45.5299  0.368
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