David Kleinfeld - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Website:
http://physics.ucsd.edu/neurophysics/

207 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Mercer Lindsay N, Knutsen PM, Lozada AF, Gibbs D, Karten HJ, Kleinfeld D. Orofacial Movements Involve Parallel Corticobulbar Projections from Motor Cortex to Trigeminal Premotor Nuclei. Neuron. PMID 31587918 DOI: 10.1016/j.neuron.2019.08.032  0.84
2019 Kleinfeld D, Luan L, Mitra PP, Robinson JT, Sarpeshkar R, Shepard K, Xie C, Harris TD. Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain? Neuron. PMID 31495645 DOI: 10.1016/j.neuron.2019.08.011  0.6
2019 Smith AF, Doyeux V, Berg M, Peyrounette M, Haft-Javaherian M, Larue AE, Slater JH, Lauwers F, Blinder P, Tsai P, Kleinfeld D, Schaffer CB, Nishimura N, Davit Y, Lorthois S. Brain Capillary Networks Across Species: A few Simple Organizational Requirements Are Sufficient to Reproduce Both Structure and Function. Frontiers in Physiology. 10: 233. PMID 30971935 DOI: 10.3389/fphys.2019.00233  1
2019 Chen Y, McElvain LE, Tolpygo AS, Ferrante D, Friedman B, Mitra PP, Karten HJ, Freund Y, Kleinfeld D. An active texture-based digital atlas enables automated mapping of structures and markers across brains. Nature Methods. PMID 30858600 DOI: 10.1038/s41592-019-0328-8  0.8
2018 Desjardins M, Kılıç K, Thunemann M, Mateo C, Holland D, Ferri CGL, Cremonesi JA, Li B, Cheng Q, Weldy KL, Saisan PA, Kleinfeld D, Komiyama T, Liu TT, Bussell R, et al. Awake Mouse Imaging: From Two-Photon Microscopy to Blood Oxygen-Level Dependent Functional Magnetic Resonance Imaging. Biological Psychiatry. Cognitive Neuroscience and Neuroimaging. PMID 30691968 DOI: 10.1016/j.bpsc.2018.12.002  0.8
2018 Kurnikova A, Deschenes M, Kleinfeld D. Functional brainstem circuits for control of nose motion. Journal of Neurophysiology. PMID 30461370 DOI: 10.1152/jn.00608.2018  0.8
2018 Papadopoulos L, Blinder P, Ronellenfitsch H, Klimm F, Katifori E, Kleinfeld D, Bassett DS. Comparing two classes of biological distribution systems using network analysis. Plos Computational Biology. 14: e1006428. PMID 30192745 DOI: 10.1371/journal.pcbi.1006428  1
2018 He Y, Wang M, Chen X, Pohmann R, Polimeni JR, Scheffler K, Rosen BR, Kleinfeld D, Yu X. Ultra-Slow Single-Vessel BOLD and CBV-Based fMRI Spatiotemporal Dynamics and Their Correlation with Neuronal Intracellular Calcium Signals. Neuron. PMID 29398359 DOI: 10.1016/j.neuron.2018.01.025  0.36
2017 Mateo C, Knutsen PM, Tsai PS, Shih AY, Kleinfeld D. Entrainment of Arteriole Vasomotor Fluctuations by Neural Activity Is a Basis of Blood-Oxygenation-Level-Dependent "Resting-State" Connectivity. Neuron. PMID 29107517 DOI: 10.1016/j.neuron.2017.10.012  1
2017 Báez-Yánez MG, Ehses P, Mirkes C, Tsai PS, Kleinfeld D, Scheffler K. The impact of vessel size, orientation and intravascular contribution on the neurovascular fingerprint of BOLD bSSFP fMRI. Neuroimage. PMID 28890417 DOI: 10.1016/j.neuroimage.2017.09.015  1
2017 McElvain LE, Friedman B, Karten HJ, Svoboda K, Wang F, Deschênes M, Kleinfeld D. Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions. Neuroscience. PMID 28843993 DOI: 10.1016/j.neuroscience.2017.08.034  0.84
2017 Bellavance MA, Takatoh J, Lu J, Demers M, Kleinfeld D, Wang F, Deschênes M. Parallel Inhibitory and Excitatory Trigemino-Facial Feedback Circuitry for Reflexive Vibrissa Movement. Neuron. 95: 722-723. PMID 28772127 DOI: 10.1016/j.neuron.2017.07.022  0.84
2017 Bellavance MA, Takatoh J, Lu J, Demers M, Kleinfeld D, Wang F, Deschênes M. Parallel Inhibitory and Excitatory Trigemino-Facial Feedback Circuitry for Reflexive Vibrissa Movement. Neuron. PMID 28735746 DOI: 10.1016/j.neuron.2017.06.045  0.84
2017 Knutsen PM, Mateo C, Kleinfeld D. Correction to 'Precision mapping of the vibrissa representation within murine primary somatosensory cortex'. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28242742 DOI: 10.1098/rstb.2017.0002  0.84
2017 Kurnikova A, Moore JD, Liao SM, Deschênes M, Kleinfeld D. Coordination of Orofacial Motor Actions into Exploratory Behavior by Rat. Current Biology : Cb. PMID 28216320 DOI: 10.1016/j.cub.2017.01.013  0.84
2017 Schmid F, Tsai PS, Kleinfeld D, Jenny P, Weber B. Depth-dependent flow and pressure characteristics in cortical microvascular networks. Plos Computational Biology. 13: e1005392. PMID 28196095 DOI: 10.1371/journal.pcbi.1005392  1
2016 Uhlirova H, Kılıç K, Tian P, Sakadžić S, Gagnon L, Thunemann M, Desjardins M, Saisan PA, Nizar K, Yaseen MA, Hagler DJ, Vandenberghe M, Djurovic S, Andreassen OA, Silva GA, ... ... Kleinfeld D, et al. The roadmap for estimation of cell-type-specific neuronal activity from non-invasive measurements. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27574309 DOI: 10.1098/rstb.2015.0356  1
2016 Knutsen PM, Mateo C, Kleinfeld D. Precision mapping of the vibrissa representation within murine primary somatosensory cortex. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27574305 DOI: 10.1098/rstb.2015.0351  0.84
2016 Deschênes M, Kurnikova A, Elbaz M, Kleinfeld D. Circuits in the Ventral Medulla That Phase-Lock Motoneurons for Coordinated Sniffing and Whisking. Neural Plasticity. 2016: 7493048. PMID 27293905 DOI: 10.1155/2016/7493048  1
2016 Uhlirova H, Kılıç K, Tian P, Thunemann M, Desjardins M, Saisan PA, Sakadžić S, Ness TV, Mateo C, Cheng Q, Weldy KL, Razoux F, Vanderberghe M, Cremonesi JA, Ferri CG, ... ... Kleinfeld D, et al. Cell type specificity of neurovascular coupling in cerebral cortex. Elife. 5. PMID 27244241 DOI: 10.7554/eLife.14315  1
2016 Lacin E, Muller A, Fernando M, Kleinfeld D, Slesinger PA. Construction of Cell-based Neurotransmitter Fluorescent Engineered Reporters (CNiFERs) for Optical Detection of Neurotransmitters In Vivo. Journal of Visualized Experiments : Jove. PMID 27214050 DOI: 10.3791/53290  1
2016 Deschênes M, Takatoh J, Kurnikova A, Moore JD, Demers M, Elbaz M, Furuta T, Wang F, Kleinfeld D. Inhibition, Not Excitation, Drives Rhythmic Whisking. Neuron. PMID 27041498 DOI: 10.1016/j.neuron.2016.03.007  1
2016 Akassoglou K, Agalliu D, Chang CJ, Davalos D, Grutzendler J, Hillman EM, Khakh BS, Kleinfeld D, McGavern DB, Nelson SJ, Zlokovic BV. Neurovascular and Immuno-Imaging: From Mechanisms to Therapies. Proceedings of the Inaugural Symposium. Frontiers in Neuroscience. 10: 46. PMID 26941593 DOI: 10.3389/fnins.2016.00046  1
2016 Kleinfeld D, Deschênes M, Ulanovsky N. Whisking, Sniffing, and the Hippocampal θ-Rhythm: A Tale of Two Oscillators. Plos Biology. 14: e1002385. PMID 26890361 DOI: 10.1371/journal.pbio.1002385  1
2015 Moore JD, Mercer Lindsay N, Deschênes M, Kleinfeld D. Vibrissa Self-Motion and Touch Are Reliably Encoded along the Same Somatosensory Pathway from Brainstem through Thalamus. Plos Biology. 13: e1002253. PMID 26393890 DOI: 10.1371/journal.pbio.1002253  1
2015 Briggman KL, Kristan WB, González JE, Kleinfeld D, Tsien RY. Monitoring Integrated Activity of Individual Neurons Using FRET-Based Voltage-Sensitive Dyes. Advances in Experimental Medicine and Biology. 859: 149-69. PMID 26238052 DOI: 10.1007/978-3-319-17641-3_6  1
2015 Tsai PS, Mateo C, Field JJ, Schaffer CB, Anderson ME, Kleinfeld D. Ultra-large field-of-view two-photon microscopy. Optics Express. 23: 13833-47. PMID 26072755  1
2015 Moore JD, Deschênes M, Kleinfeld D. Juxtacellular Monitoring and Localization of Single Neurons within Sub-cortical Brain Structures of Alert, Head-restrained Rats. Journal of Visualized Experiments : Jove. PMID 25938559 DOI: 10.3791/51453  1
2015 Whiteley SJ, Knutsen PM, Matthews DW, Kleinfeld D. Deflection of a vibrissa leads to a gradient of strain across mechanoreceptors in a mystacial follicle. Journal of Neurophysiology. 114: 138-45. PMID 25855692 DOI: 10.1152/jn.00179.2015  1
2015 Hussain T, Mastrodimos MB, Raju SC, Glasgow HL, Whitney M, Friedman B, Moore JD, Kleinfeld D, Steinbach P, Messer K, Pu M, Tsien RY, Nguyen QT. Fluorescently labeled peptide increases identification of degenerated facial nerve branches during surgery and improves functional outcome. Plos One. 10: e0119600. PMID 25751149 DOI: 10.1371/journal.pone.0119600  1
2015 Shih AY, Rühlmann C, Blinder P, Devor A, Drew PJ, Friedman B, Knutsen PM, Lyden PD, Matéo C, Mellander L, Nishimura N, Schaffer CB, Tsai PS, Kleinfeld D. Robust and fragile aspects of cortical blood flow in relation to the underlying angioarchitecture. Microcirculation (New York, N.Y. : 1994). 22: 204-18. PMID 25705966 DOI: 10.1111/micc.12195  1
2015 Matthews DW, Deschênes M, Furuta T, Moore JD, Wang F, Karten HJ, Kleinfeld D. Feedback in the brainstem: an excitatory disynaptic pathway for control of whisking. The Journal of Comparative Neurology. 523: 921-42. PMID 25503925 DOI: 10.1002/cne.23724  1
2015 Haidarliu S, Kleinfeld D, Deschênes M, Ahissar E. The Musculature That Drives Active Touch by Vibrissae and Nose in Mice. Anatomical Record (Hoboken, N.J. : 2007). 298: 1347-58. PMID 25408106 DOI: 10.1002/ar.23102  1
2015 Deschênes M, Haidarliu S, Demers M, Moore J, Kleinfeld D, Ahissar E. Muscles involved in naris dilation and nose motion in rat. Anatomical Record (Hoboken, N.J. : 2007). 298: 546-53. PMID 25257748 DOI: 10.1002/ar.23053  1
2015 Tsai PS, Mateo C, Field JJ, Schaffer CB, Anderson ME, Kleinfeld D. Ultra-large field-of-view two-photon microscopy Optics Express. 23: 13833-13847. DOI: 10.1364/OE.23.013833  1
2015 Briggman KL, Kristan WB, González JE, Kleinfeld D, Tsien RY. Monitoring integrated activity of individual neurons using fret-based voltage-sensitive dyes Advances in Experimental Medicine and Biology. 859: 149-169. DOI: 10.1007/978-3-319-17641-3_6  1
2014 Kleinfeld D, Moore JD, Wang F, Deschênes M. The Brainstem Oscillator for Whisking and the Case for Breathing as the Master Clock for Orofacial Motor Actions. Cold Spring Harbor Symposia On Quantitative Biology. 79: 29-39. PMID 25876629 DOI: 10.1101/sqb.2014.79.024794  1
2014 Muller A, Joseph V, Slesinger PA, Kleinfeld D. Cell-based reporters reveal in vivo dynamics of dopamine and norepinephrine release in murine cortex. Nature Methods. 11: 1245-52. PMID 25344639 DOI: 10.1038/nmeth.3151  1
2014 Moore JD, Deschênes M, Kurnikova A, Kleinfeld D. Activation and measurement of free whisking in the lightly anesthetized rodent. Nature Protocols. 9: 1792-802. PMID 24992095 DOI: 10.1038/nprot.2014.119  1
2014 Moore JD, Kleinfeld D, Wang F. How the brainstem controls orofacial behaviors comprised of rhythmic actions. Trends in Neurosciences. 37: 370-80. PMID 24890196 DOI: 10.1016/j.tins.2014.05.001  1
2014 Kleinfeld D, Deschênes M, Wang F, Moore JD. More than a rhythm of life: breathing as a binder of orofacial sensation. Nature Neuroscience. 17: 647-51. PMID 24762718 DOI: 10.1038/nn.3693  1
2014 Kleinfeld D, Mitra PP. Spectral methods for functional brain imaging. Cold Spring Harbor Protocols. 2014: 248-62. PMID 24591695 DOI: 10.1101/pdb.top081075  1
2014 Shih AY, Driscoll JD, Pesavento MJ, Kleinfeld D. Two-photon microscopy to measure blood flow and concurrent brain cell activity Neuromethods. 85: 273-290. DOI: 10.1007/978-1-62703-785-3_16  1
2014 Shih AY, Drew PJ, Kleinfeld D. Imaging vasodynamics in the Awake mouse brain with two-photon microscopy Neuromethods. 88: 55-73. DOI: 10.1007/978-1-4939-0724-3_4  1
2013 Shih AY, Nishimura N, Nguyen J, Friedman B, Lyden PD, Schaffer CB, Kleinfeld D. Optically induced occlusion of single blood vessels in rodent neocortex. Cold Spring Harbor Protocols. 2013: 1153-60. PMID 24298038 DOI: 10.1101/pdb.prot079509  1
2013 Haidarliu S, Kleinfeld D, Ahissar E. Mediation of muscular control of rhinarial motility in rats by the nasal cartilaginous skeleton. Anatomical Record (Hoboken, N.J. : 2007). 296: 1821-32. PMID 24249396 DOI: 10.1002/ar.22822  1
2013 Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, ... ... Kleinfeld D, et al. The challenge of connecting the dots in the B.R.A.I.N. Neuron. 80: 270-4. PMID 24139032 DOI: 10.1016/j.neuron.2013.09.008  1
2013 Jeong DC, Tsai PS, Kleinfeld D. All-optical osteotomy to create windows for transcranial imaging in mice. Optics Express. 21: 23160-8. PMID 24104230 DOI: 10.1364/OE.21.023160  1
2013 Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY. ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation. Nature Neuroscience. 16: 1499-508. PMID 23995068 DOI: 10.1038/nn.3502  1
2013 Driscoll JD, Shih AY, Drew PJ, Cauwenberghs G, Kleinfeld D. Two-photon imaging of blood flow in the rat cortex. Cold Spring Harbor Protocols. 2013: 759-67. PMID 23906919 DOI: 10.1101/pdb.prot076513  1
2013 Blinder P, Tsai PS, Kaufhold JP, Knutsen PM, Suhl H, Kleinfeld D. The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow. Nature Neuroscience. 16: 889-97. PMID 23749145 DOI: 10.1038/nn.3426  1
2013 Moore JD, Deschênes M, Furuta T, Huber D, Smear MC, Demers M, Kleinfeld D. Hierarchy of orofacial rhythms revealed through whisking and breathing. Nature. 497: 205-10. PMID 23624373 DOI: 10.1038/nature12076  1
2013 Tsai PS, Blinder P, Squier JA, Kleinfeld D. All-optical in situ histology of brain tissue with femtosecond laser pulses. Cold Spring Harbor Protocols. 2013: 327-34. PMID 23547156 DOI: 10.1101/pdb.prot073858  1
2013 Shih AY, Blinder P, Tsai PS, Friedman B, Stanley G, Lyden PD, Kleinfeld D. The smallest stroke: occlusion of one penetrating vessel leads to infarction and a cognitive deficit. Nature Neuroscience. 16: 55-63. PMID 23242312 DOI: 10.1038/nn.3278  1
2012 Field JJ, Sheetz KE, Chandler EV, Hoover EE, Young MD, Ding SY, Sylvester AW, Kleinfeld D, Squier JA. Differential Multiphoton Laser Scanning Microscopy. Ieee Journal of Selected Topics in Quantum Electronics : a Publication of the Ieee Lasers and Electro-Optics Society. 18: 14-28. PMID 27390511 DOI: 10.1109/JSTQE.2010.2077622  1
2012 Kaufhold JP, Tsai PS, Blinder P, Kleinfeld D. Vectorization of optically sectioned brain microvasculature: learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments. Medical Image Analysis. 16: 1241-58. PMID 22854035 DOI: 10.1016/j.media.2012.06.004  1
2012 Haidarliu S, Golomb D, Kleinfeld D, Ahissar E. Dorsorostral snout muscles in the rat subserve coordinated movement for whisking and sniffing. Anatomical Record (Hoboken, N.J. : 2007). 295: 1181-91. PMID 22641389 DOI: 10.1002/ar.22501  1
2012 Shih AY, Mateo C, Drew PJ, Tsai PS, Kleinfeld D. A polished and reinforced thinned-skull window for long-term imaging of the mouse brain. Journal of Visualized Experiments : Jove. PMID 22433225 DOI: 10.3791/3742  1
2012 LaPorta A, Kleinfeld D. Interferometric detection of action potentials. Cold Spring Harbor Protocols. 2012: 307-11. PMID 22383643 DOI: 10.1101/pdb.ip068148  1
2012 Shih AY, Driscoll JD, Drew PJ, Nishimura N, Schaffer CB, Kleinfeld D. Two-photon microscopy as a tool to study blood flow and neurovascular coupling in the rodent brain. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 32: 1277-309. PMID 22293983 DOI: 10.1038/jcbfm.2011.196  1
2012 Deschênes M, Moore J, Kleinfeld D. Sniffing and whisking in rodents. Current Opinion in Neurobiology. 22: 243-50. PMID 22177596 DOI: 10.1016/j.conb.2011.11.013  1
2012 Jeong DC, Tsai PS, Kleinfeld D. Prospect for feedback guided surgery with ultra-short pulsed laser light. Current Opinion in Neurobiology. 22: 24-33. PMID 22088392 DOI: 10.1016/j.conb.2011.10.020  1
2012 Field JJ, Sheetz KE, Chandler EV, Hoover EE, Young MD, Ding SY, Sylvester AW, Kleinfeld D, Squier JA. Differential multiphoton laser scanning microscopy Ieee Journal On Selected Topics in Quantum Electronics. 18: 14-28. DOI: 10.1109/JSTQE.2010.2077622  1
2011 Kleinfeld D, Deschênes M. Neuronal basis for object location in the vibrissa scanning sensorimotor system. Neuron. 72: 455-68. PMID 22078505 DOI: 10.1016/j.neuron.2011.10.009  1
2011 Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HS, Micheva KD, Oberlaender M, Prohaska S, Reid RC, et al. Large-scale automated histology in the pursuit of connectomes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 16125-38. PMID 22072665 DOI: 10.1523/JNEUROSCI.4077-11.2011  1
2011 Hill DN, Curtis JC, Moore JD, Kleinfeld D. Primary motor cortex reports efferent control of vibrissa motion on multiple timescales. Neuron. 72: 344-56. PMID 22017992 DOI: 10.1016/j.neuron.2011.09.020  1
2011 Hill DN, Mehta SB, Kleinfeld D. Quality metrics to accompany spike sorting of extracellular signals. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 8699-705. PMID 21677152 DOI: 10.1523/JNEUROSCI.0971-11.2011  1
2011 Kleinfeld D, Blinder P, Drew PJ, Driscoll JD, Muller A, Tsai PS, Shih AY. A guide to delineate the logic of neurovascular signaling in the brain. Frontiers in Neuroenergetics. 3: 1. PMID 21559095 DOI: 10.3389/fnene.2011.00001  1
2011 Drew PJ, Shih AY, Kleinfeld D. Fluctuating and sensory-induced vasodynamics in rodent cortex extend arteriole capacity. Proceedings of the National Academy of Sciences of the United States of America. 108: 8473-8. PMID 21536897 DOI: 10.1073/pnas.1100428108  1
2011 Driscoll JD, Shih AY, Iyengar S, Field JJ, White GA, Squier JA, Cauwenberghs G, Kleinfeld D. Photon counting, censor corrections, and lifetime imaging for improved detection in two-photon microscopy. Journal of Neurophysiology. 105: 3106-13. PMID 21471395 DOI: 10.1152/jn.00649.2010  1
2011 Yamauchi JG, Nemecz Á, Nguyen QT, Muller A, Schroeder LF, Talley TT, Lindstrom J, Kleinfeld D, Taylor P. Characterizing ligand-gated ion channel receptors with genetically encoded Ca2++ sensors. Plos One. 6: e16519. PMID 21305050 DOI: 10.1371/journal.pone.0016519  1
2011 Vitek DN, Block E, Bellouard Y, Adams DE, Backus S, Kleinfeld D, Durfee C, Squier JA. Spatio-temporally focused femtosecond laser pulses for anisotropic writing in optically transparent materials Optics Infobase Conference Papers 1
2011 Vitek DN, Block E, Bellouard Y, Adams DE, Backus S, Kleinfeld D, Durfee C, Squier JA. Spatio-temporally focused femtosecond laser pulses for anisotropic writing in optically transparent materials Optics Infobase Conference Papers 1
2010 Vitek DN, Block E, Bellouard Y, Adams DE, Backus S, Kleinfeld D, Durfee CG, Squier JA. Spatio-temporally focused femtosecond laser pulses for nonreciprocal writing in optically transparent materials. Optics Express. 18: 24673-8. PMID 21164813 DOI: 10.1364/OE.18.024673  1
2010 Drew PJ, Shih AY, Driscoll JD, Knutsen PM, Blinder P, Davalos D, Akassoglou K, Tsai PS, Kleinfeld D. Chronic optical access through a polished and reinforced thinned skull. Nature Methods. 7: 981-4. PMID 20966916 DOI: 10.1038/nmeth.1530  1
2010 Vitek DN, Adams DE, Johnson A, Tsai PS, Backus S, Durfee CG, Kleinfeld D, Squier JA. Temporally focused femtosecond laser pulses for low numerical aperture micromachining through optically transparent materials. Optics Express. 18: 18086-94. PMID 20721196 DOI: 10.1364/OE.18.018086  1
2010 Blinder P, Shih AY, Rafie C, Kleinfeld D. Topological basis for the robust distribution of blood to rodent neocortex. Proceedings of the National Academy of Sciences of the United States of America. 107: 12670-5. PMID 20616030 DOI: 10.1073/pnas.1007239107  1
2010 Valmianski I, Shih AY, Driscoll JD, Matthews DW, Freund Y, Kleinfeld D. Automatic identification of fluorescently labeled brain cells for rapid functional imaging. Journal of Neurophysiology. 104: 1803-11. PMID 20610792 DOI: 10.1152/jn.00484.2010  1
2010 Field JJ, Carriles R, Sheetz KE, Chandler EV, Hoover EE, Tillo SE, Hughes TE, Sylvester AW, Kleinfeld D, Squier JA. Optimizing the fluorescent yield in two-photon laser scanning microscopy with dispersion compensation. Optics Express. 18: 13661-72. PMID 20588500 DOI: 10.1364/OE.18.013661  1
2010 Nguyen QT, Schroeder LF, Mank M, Muller A, Taylor P, Griesbeck O, Kleinfeld D. An in vivo biosensor for neurotransmitter release and in situ receptor activity. Nature Neuroscience. 13: 127-32. PMID 20010818 DOI: 10.1038/nn.2469  1
2010 Drew PJ, Blinder P, Cauwenberghs G, Shih AY, Kleinfeld D. Rapid determination of particle velocity from space-time images using the Radon transform. Journal of Computational Neuroscience. 29: 5-11. PMID 19459038 DOI: 10.1007/s10827-009-0159-1  1
2010 Kleinfeld D. Vibrissa Movement, Sensation and Sensorimotor Control Encyclopedia of Neuroscience. 155-177. DOI: 10.1016/B978-008045046-9.01351-6  1
2010 Devor A, Shih AY, Tsai PS, Blinder P, Tian P, Teng IC, Kleinfeld D. Two-photon laser scanning microscopy as a tool to study cortical vasodynamics under normal and ischemic conditions Imaging the Brain With Optical Methods. 245-261. DOI: 10.1007/978-1-4419-0452-2_11  1
2010 Vitek D, Adams D, Johnson A, Kleinfeld D, Backus S, Durfee C, Squier J. Spatially chirped pulses for high aspect ratio micromachining by femtosecond laser ablation Optics Infobase Conference Papers 1
2009 Tsai PS, Kaufhold JP, Blinder P, Friedman B, Drew PJ, Karten HJ, Lyden PD, Kleinfeld D. Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 14553-70. PMID 19923289 DOI: 10.1523/JNEUROSCI.3287-09.2009  1
2009 Pesaran B, Kleinfeld D. Enter the ratrix. Proceedings of the National Academy of Sciences of the United States of America. 106: 19209-10. PMID 19906991 DOI: 10.1073/pnas.0911424106  1
2009 Chen B, Friedman B, Cheng Q, Tsai P, Schim E, Kleinfeld D, Lyden PD. Severe blood-brain barrier disruption and surrounding tissue injury. Stroke; a Journal of Cerebral Circulation. 40: e666-74. PMID 19893002 DOI: 10.1161/STROKEAHA.109.551341  1
2009 Weidemann A, Kerdiles YM, Knaup KX, Rafie CA, Boutin AT, Stockmann C, Takeda N, Scadeng M, Shih AY, Haase VH, Simon MC, Kleinfeld D, Johnson RS. The glial cell response is an essential component of hypoxia-induced erythropoiesis in mice. The Journal of Clinical Investigation. 119: 3373-83. PMID 19809162 DOI: 10.1172/JCI39378  1
2009 Friedman B, Schachtrup C, Tsai PS, Shih AY, Akassoglou K, Kleinfeld D, Lyden PD. Acute vascular disruption and aquaporin 4 loss after stroke. Stroke; a Journal of Cerebral Circulation. 40: 2182-90. PMID 19372455 DOI: 10.1161/STROKEAHA.108.523720  1
2009 Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, ... ... Kleinfeld D, et al. A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. Plos Computational Biology. 5: e1000334. PMID 19325892 DOI: 10.1371/journal.pcbi.1000334  1
2009 Curtis JC, Kleinfeld D. Phase-to-rate transformations encode touch in cortical neurons of a scanning sensorimotor system. Nature Neuroscience. 12: 492-501. PMID 19270688 DOI: 10.1038/nn.2283  1
2009 Tsai PS, Blinder P, Migliori BJ, Neev J, Jin Y, Squier JA, Kleinfeld D. Plasma-mediated ablation: an optical tool for submicrometer surgery on neuronal and vascular systems. Current Opinion in Biotechnology. 20: 90-9. PMID 19269159 DOI: 10.1016/j.copbio.2009.02.003  1
2009 Shih AY, Friedman B, Drew PJ, Tsai PS, Lyden PD, Kleinfeld D. Active dilation of penetrating arterioles restores red blood cell flux to penumbral neocortex after focal stroke. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 29: 738-51. PMID 19174826 DOI: 10.1038/jcbfm.2008.166  1
2009 Tsai PS, Blinder P, Drew P, Driscoll J, Jeong D, Kaufhold JP, Shih A, Valmianski I, Kleinfeld D. Topology, dynamics, and control in cortical blood flow elucidated with optical techniques Proceedings of Spie - the International Society For Optical Engineering. 7397. DOI: 10.1117/12.829588  1
2009 Kleinfeld D, Friedman B, Lyden PD, Shih AY. Targeted occlusion to surface and deep vessels in neocortex via linear and nonlinear optical absorption Animal Models of Acute Neurological Injuries. 169-185. DOI: 10.1007/978-1-60327-185-1_14  1
2009 Devor A, Tian P, Nishimura N, Teng IC, Hillman EMC, Narayanan SN, Ulbert I, Boas DA, Kleinfeld D, Dale AM. Suppressed neuronal activity and concurrent arteriolar vasoconstriction may explain negative blood oxygenation level-dependent signal (Journal of Neuroscience (2007), (4452-4459)) Journal of Neuroscience. 29.  1
2008 Devor A, Hillman EM, Tian P, Waeber C, Teng IC, Ruvinskaya L, Shalinsky MH, Zhu H, Haslinger RH, Narayanan SN, Ulbert I, Dunn AK, Lo EH, Rosen BR, Dale AM, ... Kleinfeld D, et al. Stimulus-induced changes in blood flow and 2-deoxyglucose uptake dissociate in ipsilateral somatosensory cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 14347-57. PMID 19118167 DOI: 10.1523/JNEUROSCI.4307-08.2008  1
2008 Helmchen F, Kleinfeld D. Chapter 10. In vivo measurements of blood flow and glial cell function with two-photon laser-scanning microscopy. Methods in Enzymology. 444: 231-54. PMID 19007667 DOI: 10.1016/S0076-6879(08)02810-3  1
2008 Sheetz KE, Hoover EE, Carriles R, Kleinfeld D, Squier JA. Advancing multifocal nonlinear microscopy: development and application of a novel multibeam Yb:KGd(WO4)2 oscillator. Optics Express. 16: 17574-84. PMID 18958037 DOI: 10.1364/OE.16.017574  1
2008 Wolfe J, Hill DN, Pahlavan S, Drew PJ, Kleinfeld D, Feldman DE. Texture coding in the rat whisker system: slip-stick versus differential resonance. Plos Biology. 6: e215. PMID 18752354 DOI: 10.1371/journal.pbio.0060215  1
2008 Drew PJ, Duyn JH, Golanov E, Kleinfeld D. Finding coherence in spontaneous oscillations. Nature Neuroscience. 11: 991-3. PMID 18725901 DOI: 10.1038/nn0908-991  1
2008 Diamond ME, von Heimendahl M, Knutsen PM, Kleinfeld D, Ahissar E. 'Where' and 'what' in the whisker sensorimotor system. Nature Reviews. Neuroscience. 9: 601-12. PMID 18641667 DOI: 10.1038/nrn2411  1
2008 Hill DN, Bermejo R, Zeigler HP, Kleinfeld D. Biomechanics of the vibrissa motor plant in rat: rhythmic whisking consists of triphasic neuromuscular activity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 3438-55. PMID 18367610 DOI: 10.1523/JNEUROSCI.5008-07.2008  1
2008 Diamond ME, Von Heimendahl M, Knutsen PM, Kleinfeld D, Ahissar E. 'Where' and 'what' in the whisker sensorimotor system (Nature Reviews Neuroscience (2008) 9, (601-612)) Nature Reviews Neuroscience. 9: 730. DOI: 10.1038/nrn2491  1
2008 Günay C, Smolinski TG, Lytton WW, Morse TM, Gleeson P, Crook S, Steuber V, Silver A, Voicu H, Andrews P, Bokil H, Maniar H, Loader C, Mehta S, Kleinfeld D, et al. Computational intelligence in electrophysiology: Trends and open problems Studies in Computational Intelligence. 122: 325-359. DOI: 10.1007/978-3-540-78534-7_14  1
2008 Tsai PS, Blinder P, Migliori B, Kleinfeld D. Ultra-short laser pulses as a tool to measure as well as perturb neurovascular activity in the rodent brain Optics Infobase Conference Papers 1
2007 Kleinfeld D, Waters J. Wilder Penfield in the age of YouTube: visualizing the sequential activation of sensorimotor areas across neocortex. Neuron. 56: 760-2. PMID 18054853 DOI: 10.1016/j.neuron.2007.11.009  1
2007 Devor A, Tian P, Nishimura N, Teng IC, Hillman EM, Narayanan SN, Ulbert I, Boas DA, Kleinfeld D, Dale AM. Suppressed neuronal activity and concurrent arteriolar vasoconstriction may explain negative blood oxygenation level-dependent signal. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 4452-9. PMID 17442830 DOI: 10.1523/JNEUROSCI.0134-07.2007  1
2007 Clay GO, Schaffer CB, Kleinfeld D. Large two-photon absorptivity of hemoglobin in the infrared range of 780-880 nm. The Journal of Chemical Physics. 126: 025102. PMID 17228976 DOI: 10.1063/1.2404678  1
2007 Mehta SB, Whitmer D, Figueroa R, Williams BA, Kleinfeld D. Active spatial perception in the vibrissa scanning sensorimotor system. Plos Biology. 5: e15. PMID 17227143 DOI: 10.1371/journal.pbio.0050015  1
2007 Devor A, Trevelyan A, Kleinfeld D. Is there a common origin to surround-inhibition as seen through electrical activity versus hemodynamic changes? Focus on "Duration-dependent response in SI to vibrotactile stimulation in squirrel monkey". Journal of Neurophysiology. 97: 1880-2. PMID 17215499 DOI: 10.1152/jn.01218.2006  1
2007 Nishimura N, Schaffer CB, Friedman B, Lyden PD, Kleinfeld D. Penetrating arterioles are a bottleneck in the perfusion of neocortex. Proceedings of the National Academy of Sciences of the United States of America. 104: 365-70. PMID 17190804 DOI: 10.1073/pnas.0609551104  1
2007 Tsai PS, Migliori B, Campbell K, Kim TN, Kam Z, Groisman A, Kleinfeld D. Spherical aberration correction in nonlinear microscopy and optical ablation using a transparent deformable membrane Applied Physics Letters. 91. DOI: 10.1063/1.2804014  1
2006 Kleinfeld D, Ahissar E, Diamond ME. Active sensation: insights from the rodent vibrissa sensorimotor system. Current Opinion in Neurobiology. 16: 435-44. PMID 16837190 DOI: 10.1016/j.conb.2006.06.009  1
2006 Berg RW, Whitmer D, Kleinfeld D. Exploratory whisking by rat is not phase locked to the hippocampal theta rhythm. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 6518-22. PMID 16775139 DOI: 10.1523/JNEUROSCI.0190-06.2006  1
2006 Curtis JC, Kleinfeld D. Seeing what the mouse sees with its vibrissae: a matter of behavioral state. Neuron. 50: 524-6. PMID 16701202 DOI: 10.1016/j.neuron.2006.05.004  1
2006 Nguyen QT, Tsai PS, Kleinfeld D. MPScope: a versatile software suite for multiphoton microscopy. Journal of Neuroscience Methods. 156: 351-9. PMID 16621010 DOI: 10.1016/j.jneumeth.2006.03.001  1
2006 Nishimura N, Schaffer CB, Friedman B, Tsai PS, Lyden PD, Kleinfeld D. Targeted insult to subsurface cortical blood vessels using ultrashort laser pulses: three models of stroke. Nature Methods. 3: 99-108. PMID 16432519 DOI: 10.1038/nmeth844  1
2006 Kleinfeld D. Science is an adventure, not a battle. Nature. 439: 18. PMID 16397477 DOI: 10.1038/439018c  1
2006 Schaffer CB, Friedman B, Nishimura N, Schroeder LF, Tsai PS, Ebner FF, Lyden PD, Kleinfeld D. Two-photon imaging of cortical surface microvessels reveals a robust redistribution in blood flow after vascular occlusion. Plos Biology. 4: e22. PMID 16379497 DOI: 10.1371/journal.pbio.0040022  1
2006 Golomb D, Ahissar E, Kleinfeld D. Coding of stimulus frequency by latency in thalamic networks through the interplay of GABAB-mediated feedback and stimulus shape. Journal of Neurophysiology. 95: 1735-50. PMID 16267113 DOI: 10.1152/jn.00734.2005  1
2006 Clay GO, Millard AC, Schaffer CB, Aus-der-Au J, Tsai PS, Squier JA, Kleinfeld D. Spectroscopy of third-harmonic generation: Evidence for resonances in model compounds and ligated hemoglobin Journal of the Optical Society of America B: Optical Physics. 23: 932-950. DOI: 10.1364/JOSAB.23.000932  1
2006 Kleinfeld D, Mehta SB. Spectral mixing in nervous systems: Experimental evidence and biologically plausible circuits Progress of Theoretical Physics Supplement. 161: 86-98. DOI: 10.1143/PTPS.161.86  1
2006 Nishimura N, Schaffer CB, Kleinfeld D. In vivo manipulation of biological systems with femtosecond laser pulses Proceedings of Spie - the International Society For Optical Engineering. 6261. DOI: 10.1117/12.668886  1
2006 Clay O, Schaffer CB, Squier JA, Kleinfeld D. Ultrafast third harmonic micro-spectroscopy reveals a two-photon resonance in human hemoglobin Proceedings of Spie - the International Society For Optical Engineering. 6108. DOI: 10.1117/12.659110  1
2006 Devor A, Hillman EMC, Nishimura N, Ulbert I, Narayanan SN, Teng I, Dunn AK, Boas DA, Kleinfeld D, Dale AM. Applying optical imaging to study neurovascular coupling in cerebral cortex: From populational scale to single-cell singlevessel measurements Optics Infobase Conference Papers 1
2006 Squier JA, Tsai PS, Kleinfeld D. All optical histology using femtosecond laser pulses Optics Infobase Conference Papers 1
2006 Squier JA, Tsai PS, Kleinfeld D. All optical histology using femtosecond laser pulses Optics Infobase Conference Papers 1
2006 Squier JA, Tsai PS, Kleinfeld D. All optical histology using femtosecond laser pulses Optics Infobase Conference Papers 1
2005 Kleinfeld D, Griesbeck O. From art to engineering? The rise of in vivo mammalian electrophysiology via genetically targeted labeling and nonlinear imaging. Plos Biology. 3: e355. PMID 16207078 DOI: 10.1371/journal.pbio.0030355  1
2005 Berg RW, Friedman B, Schroeder LF, Kleinfeld D. Activation of nucleus basalis facilitates cortical control of a brain stem motor program. Journal of Neurophysiology. 94: 699-711. PMID 15728764 DOI: 10.1152/jn.01125.2004  1
2005 Nguyen QT, Kleinfeld D. Positive feedback in a brainstem tactile sensorimotor loop. Neuron. 45: 447-57. PMID 15694330 DOI: 10.1016/j.neuron.2004.12.042  1
2005 Kim TN, Campbell K, Groisman A, Kleinfeld D, Schaffer CB. Femtosecond laser-drilled capillary integrated into a microfluidic device Applied Physics Letters. 86: 1-3. DOI: 10.1063/1.1926423  1
2005 Nishimura N, Schaffera CB, Friedman B, Tsai PS, Lyden PD, Kleinfeld D. Two-photon imaging of cortical microvascular blood flow in response to single vessel occlusion Optics Infobase Conference Papers 1
2005 Tsai PS, Kima TN, Campbella K, Groismana A, Kamc Z, Kleinfeld D. Spherical aberration correction in deep multi-photon imaging Optics Infobase Conference Papers 1
2004 Ahrens KF, Kleinfeld D. Current flow in vibrissa motor cortex can phase-lock with exploratory rhythmic whisking in rat. Journal of Neurophysiology. 92: 1700-7. PMID 15331651 DOI: 10.1152/jn.00020.2004  1
2004 Ganguly K, Kleinfeld D. Goal-directed whisking increases phase-locking between vibrissa movement and electrical activity in primary sensory cortex in rat. Proceedings of the National Academy of Sciences of the United States of America. 101: 12348-53. PMID 15297618 DOI: 10.1073/pnas.0308470101  1
2004 Nguyen QT, Wessel R, Kleinfeld D. Developmental regulation of active and passive membrane properties in rat vibrissa motoneurones. The Journal of Physiology. 556: 203-19. PMID 14766934 DOI: 10.1113/jphysiol.2003.060087  1
2004 Mehta SB, Kleinfeld D. Frisking the whiskers: patterned sensory input in the rat vibrissa system. Neuron. 41: 181-4. PMID 14741099 DOI: 10.1016/S0896-6273(04)00002-9  1
2004 Nishimura N, Schaffer CB, Friedman B, Tsai PS, Lyden PD, Kleinfeld D. Targeted disruption of deep-lying neocortical microvessels in rat using ultrashort laser pulses Proceedings of Spie - the International Society For Optical Engineering. 5340: 179-187. DOI: 10.1117/12.555404  1
2004 Schaffer CB, Kim TN, Garcia JF, Mazur E, Groisman A, Kleinfeld D. Micromachining of bulk transparent materials using nanojoule femtosecond laser pulses Proceedings of Spie - the International Society For Optical Engineering. 5273: 469-471. DOI: 10.1117/12.525443  1
2004 Ifarraguerri A, Thompson B, Tsai PS, Friedman B, Schaffer CB, Lev-Ram V, Tsien RY, Squier JA, Kleinfeld D. Quantitative analysis of volumetric TPLSM data 2004 2nd Ieee International Symposium On Biomedical Imaging: Macro to Nano. 1: 804-807.  1
2004 Tsai PS, Friedman B, Squier J, Kleinfeld D. Ultrashort pulsed laser light Optics and Photonics News. 15: 24-29.  1
2003 Taylor AL, Cottrell GW, Kleinfeld D, Kristan WB. Imaging reveals synaptic targets of a swim-terminating neuron in the leech CNS. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 11402-10. PMID 14673004  1
2003 Lev-Ram V, Mehta SB, Kleinfeld D, Tsien RY. Reversing cerebellar long-term depression. Proceedings of the National Academy of Sciences of the United States of America. 100: 15989-93. PMID 14671315 DOI: 10.1073/pnas.2636935100  1
2003 Berg RW, Kleinfeld D. Vibrissa movement elicited by rhythmic electrical microstimulation to motor cortex in the aroused rat mimics exploratory whisking. Journal of Neurophysiology. 90: 2950-63. PMID 12904336 DOI: 10.1152/jn.00511.2003  1
2003 Sachdev RN, Berg RW, Champney G, Kleinfeld D, Ebner FF. Unilateral vibrissa contact: changes in amplitude but not timing of rhythmic whisking. Somatosensory & Motor Research. 20: 163-9. PMID 12850826 DOI: 10.1080/08990220311000405208  1
2003 Tsai PS, Friedman B, Ifarraguerri AI, Thompson BD, Lev-Ram V, Schaffer CB, Xiong Q, Tsien RY, Squier JA, Kleinfeld D. All-optical histology using ultrashort laser pulses. Neuron. 39: 27-41. PMID 12848930 DOI: 10.1016/S0896-6273(03)00370-2  1
2003 Berg RW, Kleinfeld D. Rhythmic whisking by rat: retraction as well as protraction of the vibrissae is under active muscular control. Journal of Neurophysiology. 89: 104-17. PMID 12522163 DOI: 10.1152/jn.00600.2002  1
2003 Ahissar E, Kleinfeld D. Closed-loop neuronal computations: focus on vibrissa somatosensation in rat. Cerebral Cortex (New York, N.Y. : 1991). 13: 53-62. PMID 12466215  1
2003 Schaffer CB, Tsai PS, Nishimura N, Schroeder LF, Friedman B, Lyden PD, Ebner FF, Kleinfeld D. All optical thrombotic stroke model for near-surface blood vessels in rat: Focal illumination of exogenous photosensitizers combined with real-time two-photon imaging Proceedings of Spie - the International Society For Optical Engineering. 4978: 222-231. DOI: 10.1117/12.484208  1
2003 Schaffer CB, Ebner FF, Nishimura N, Friedman B, Tsai PS, Schroeder LF, Lyden PD, Kleinfeld D. Real-time two-photon fluorescence microscopy of blood flow dynamics following photothrombotic stroke in rat neocortex Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-Leos. 1: 307-308.  1
2003 Tsai PS, Friedman B, Ifarraguerri AI, Thompson BD, Lev-Ram V, Schaffer CB, Xiong Q, Tsien RY, Squier JA, Kleinfeld D. All optical histology: Serial ablation and multiphoton imaging of neuronal tissue with femtosecond laser pulses Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-Leos. 2: 485-486.  1
2003 Tsai PS, Friedman B, Lev-Ram V, Xiong Q, Tsien RY, Kleinfeld D, Ifarraguerri AI, Thompson BD, Squier JA. All optical histology of brain tissue: Serial ablation and multiphoton imaging with femtosecond laser pulses Osa Trends in Optics and Photonics Series. 88: 204-207.  1
2002 Ahrens KF, Levine H, Suhl H, Kleinfeld D. Spectral mixing of rhythmic neuronal signals in sensory cortex. Proceedings of the National Academy of Sciences of the United States of America. 99: 15176-81. PMID 12403828 DOI: 10.1073/pnas.222547199  1
2002 Kleinfeld D, Sachdev RN, Merchant LM, Jarvis MR, Ebner FF. Adaptive filtering of vibrissa input in motor cortex of rat. Neuron. 34: 1021-34. PMID 12086648 DOI: 10.1016/S0896-6273(02)00732-8  1
2002 O'Connor SM, Berg RW, Kleinfeld D. Coherent electrical activity between vibrissa sensory areas of cerebellum and neocortex is enhanced during free whisking. Journal of Neurophysiology. 87: 2137-48. PMID 11929931 DOI: 10.1152/jn.00229.2001  1
2002 Yoder EJ, Kleinfeld D. Cortical imaging through the intact mouse skull using two-photon excitation laser scanning microscopy. Microscopy Research and Technique. 56: 304-5. PMID 11877806 DOI: 10.1002/jemt.10002  1
2001 Luksch H, Karten HJ, Kleinfeld D, Wessel R. Chattering and differential signal processing in identified motion-sensitive neurons of parallel visual pathways in the chick tectum. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 21: 6440-6. PMID 11487668  1
2001 Ermentrout GB, Kleinfeld D. Traveling electrical waves in cortex: insights from phase dynamics and speculation on a computational role. Neuron. 29: 33-44. PMID 11182079 DOI: 10.1016/S0896-6273(01)00178-7  1
2000 Zochowski M, Cohen LB, Fuhrmann G, Kleinfeld D. Distributed and partially separate pools of neurons are correlated with two different components of the gill-withdrawal reflex in Aplysia. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 8485-92. PMID 11069956  1
2000 Prechtl JC, Bullock TH, Kleinfeld D. Direct evidence for local oscillatory current sources and intracortical phase gradients in turtle visual cortex. Proceedings of the National Academy of Sciences of the United States of America. 97: 877-82. PMID 10639173 DOI: 10.1073/pnas.97.2.877  1
1999 Venkatachalam S, Fee MS, Kleinfeld D. Ultra-miniature headstage with 6-channel drive and vacuum-assisted micro-wire implantation for chronic recording from the neocortex. Journal of Neuroscience Methods. 90: 37-46. PMID 10517272 DOI: 10.1016/S0165-0270(99)00065-5  1
1999 Wessel R, Kristan WB, Kleinfeld D. Dendritic Ca(2+)-activated K(+) conductances regulate electrical signal propagation in an invertebrate neuron. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 8319-26. PMID 10493733  1
1999 Kleinfeld D, Berg RW, O'Connor SM. Anatomical loops and their electrical dynamics in relation to whisking by rat. Somatosensory & Motor Research. 16: 69-88. PMID 10449057 DOI: 10.1080/08990229970528  1
1999 Cacciatore TW, Brodfuehrer PD, Gonzalez JE, Jiang T, Adams SR, Tsien RY, Kristan WB, Kleinfeld D. Identification of neural circuits by imaging coherent electrical activity with FRET-based dyes. Neuron. 23: 449-59. PMID 10433258 DOI: 10.1016/S0896-6273(00)80799-0  1
1999 Wessel R, Kristan WB, Kleinfeld D. Supralinear summation of synaptic inputs by an invertebrate neuron: dendritic gain is mediated by an "inward rectifier" K(+) current. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 5875-88. PMID 10407027  1
1998 Wu JY, Lam YW, Falk CX, Cohen LB, Fang J, Loew L, Prechtl JC, Kleinfeld D, Tsau Y. Voltage-sensitive dyes for monitoring multineuronal activity in the intact central nervous system. The Histochemical Journal. 30: 169-87. PMID 10188925 DOI: 10.1023/A:1003295319615  1
1998 Kleinfeld D, Mitra PP, Helmchen F, Denk W. Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. Proceedings of the National Academy of Sciences of the United States of America. 95: 15741-6. PMID 9861040 DOI: 10.1073/pnas.95.26.15741  1
1998 Brzezinski P, Messinger A, Blatt Y, Gopher A, Kleinfeld D. Charge displacements in interfacial layers containing reaction centers. The Journal of Membrane Biology. 165: 213-25. PMID 9767675 DOI: 10.1007/s002329900435  1
1998 Kleinfeld D. II. Afternoon slide session. Physiology and architecture of vibrissa cortex revealed through optical imaging of molecular contrast agents Somatosensory and Motor Research. 15: 56-57.  1
1997 Fee MS, Mitra PP, Kleinfeld D. Central versus peripheral determinants of patterned spike activity in rat vibrissa cortex during whisking. Journal of Neurophysiology. 78: 1144-9. PMID 9307141  1
1997 Yuste R, Tank DW, Kleinfeld D. Functional study of the rat cortical microcircuitry with voltage-sensitive dye imaging of neocortical slices. Cerebral Cortex (New York, N.Y. : 1991). 7: 546-58. PMID 9276179 DOI: 10.1093/cercor/7.6.546  1
1997 Prechtl JC, Cohen LB, Pesaran B, Mitra PP, Kleinfeld D. Visual stimuli induce waves of electrical activity in turtle cortex. Proceedings of the National Academy of Sciences of the United States of America. 94: 7621-6. PMID 9207142 DOI: 10.1073/pnas.94.14.7621  1
1997 Svoboda K, Denk W, Kleinfeld D, Tank DW. In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature. 385: 161-5. PMID 8990119 DOI: 10.1038/385161a0  1
1996 Fee MS, Mitra PP, Kleinfeld D. Variability of extracellular spike waveforms of cortical neurons. Journal of Neurophysiology. 76: 3823-33. PMID 8985880  1
1996 Fee MS, Mitra PP, Kleinfeld D. Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability. Journal of Neuroscience Methods. 69: 175-88. PMID 8946321 DOI: 10.1016/S0165-0270(96)00050-7  1
1996 Kleinfeld D, Delaney KR. Distributed representation of vibrissa movement in the upper layers of somatosensory cortex revealed with voltage-sensitive dyes. The Journal of Comparative Neurology. 375: 89-108. PMID 8913895 DOI: 10.1002/(SICI)1096-9861(19961104)375:1<89::AID-CNE6>3.0.CO;2-K  1
1996 Gervais R, Kleinfeld D, Delaney KR, Gelperin A. Central and reflex neuronal responses elicited by odor in a terrestrial mollusk. Journal of Neurophysiology. 76: 1327-39. PMID 8871239  1
1996 Gelperin A, Kleinfeld D, Denk W, Cooke IR. Oscillations and gaseous oxides in invertebrate olfaction. Journal of Neurobiology. 30: 110-22. PMID 8727987 DOI: 10.1002/(SICI)1097-4695(199605)30:1<110::AID-NEU10>3.0.CO;2-Q  1
1995 Friedman B, Kleinfeld D, Ip NY, Verge VM, Moulton R, Boland P, Zlotchenko E, Lindsay RM, Liu L. BDNF and NT-4/5 exert neurotrophic influences on injured adult spinal motor neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 15: 1044-56. PMID 7869082  1
1994 Tank DW, Gelperin A, Kleinfeld D. Odors, oscillations, and waves: does it all compute? Science (New York, N.Y.). 265: 1819-20. PMID 17797218 DOI: 10.1126/science.265.5180.1819  1
1994 Delaney KR, Gelperin A, Fee MS, Flores JA, Gervais R, Tank DW, Kleinfeld D. Waves and stimulus-modulated dynamics in an oscillating olfactory network. Proceedings of the National Academy of Sciences of the United States of America. 91: 669-73. PMID 8290580  1
1994 Golomb D, Kleinfeld D, Reid RC, Shapley RM, Shraiman BI. On temporal codes and the spatiotemporal response of neurons in the lateral geniculate nucleus. Journal of Neurophysiology. 72: 2990-3003. PMID 7897504  1
1994 Denk W, Delaney KR, Gelperin A, Kleinfeld D, Strowbridge BW, Tank DW, Yuste R. Anatomical and functional imaging of neurons using 2-photon laser scanning microscopy. Journal of Neuroscience Methods. 54: 151-62. PMID 7869748 DOI: 10.1016/0165-0270(94)90189-9  1
1994 Kleinfeld D, Delaney KR, Fee MS, Flores JA, Tank DW, Gelperin A. Dynamics of propagating waves in the olfactory network of a terrestrial mollusk: an electrical and optical study. Journal of Neurophysiology. 72: 1402-19. PMID 7807221  1
1991 Sompolinsky H, Golomb D, Kleinfeld D. Cooperative dynamics in visual processing. Physical Review. A. 43: 6990-7011. PMID 9905051 DOI: 10.1103/PhysRevA.43.6990  1
1991 Stepnoski RA, LaPorta A, Raccuia-Behling F, Blonder GE, Slusher RE, Kleinfeld D. Noninvasive detection of changes in membrane potential in cultured neurons by light scattering. Proceedings of the National Academy of Sciences of the United States of America. 88: 9382-6. PMID 1946349  1
1991 Parsons TD, Salzberg BM, Obaid AL, Raccuia-Behling F, Kleinfeld D. Long-term optical recording of patterns of electrical activity in ensembles of cultured Aplysia neurons. Journal of Neurophysiology. 66: 316-33. PMID 1919674  1
1990 Kleinfeld D, Raccuia-Behling F, Blonder GE. Comment on "Physical mechanisms underlying neurite outgrowth: A quantitative analysis of neuronal shape" Physical Review Letters. 65: 3064. PMID 10042771  0.12
1990 Sompolinsky H, Golomb D, Kleinfeld D. Global processing of visual stimuli in a neural network of coupled oscillators. Proceedings of the National Academy of Sciences of the United States of America. 87: 7200-4. PMID 2402502  1
1990 Kleinfeld D, Raccuia-Behling F, Chiel HJ. Circuits constructed from identified Aplysia neurons exhibit multiple patterns of persistent activity. Biophysical Journal. 57: 697-715. PMID 2344460 DOI: 10.1016/S0006-3495(90)82591-1  1
1990 Kleinfeld D, Parsons TD, Raccuia-Behling F, Salzberg BM, Obaid AL. Foreign connections are formed in vitro by Aplysia californica interneuron L10 and its in vivo followers and non-followers. The Journal of Experimental Biology. 154: 237-55. PMID 2277259  1
1990 Kleinfeld D, Raccuia-Behling F, Blonder GE. Comment on Physical mechanisms underlying neurite outgrowth: A quantitative analysis of neuronal shape Physical Review Letters. 65: 3064. DOI: 10.1103/PhysRevLett.65.3064  1
1989 Parsons TD, Kleinfeld D, Raccuia-Behling F, Salzberg BM. Optical recording of the electrical activity of synaptically interacting Aplysia neurons in culture using potentiometric probes. Biophysical Journal. 56: 213-21. PMID 2752089 DOI: 10.1016/S0006-3495(89)82666-9  1
1989 Oliva SL, Guglielmo BJ, Jacobs R, Pons VG. Failure of intravenous vancomycin and intravenous metronidazole to prevent or treat antibiotic-associated pseudomembranous colitis. The Journal of Infectious Diseases. 159: 1154-5. PMID 2491408 DOI: 10.1093/infdis/159.6.1154  1
1988 Kleinfeld DI, Sharpe RJ, Donta ST. Parenteral therapy for antibiotic-associated pseudomembranous colitis. The Journal of Infectious Diseases. 157: 389. PMID 3335816 DOI: 10.1093/infdis/157.2.389  1
1988 Kleinfeld D, Sompolinsky H. Associative neural network model for the generation of temporal patterns. Theory and application to central pattern generators. Biophysical Journal. 54: 1039-51. PMID 3233265 DOI: 10.1016/S0006-3495(88)83041-8  1
1988 Kleinfeld D, Kahler KH, Hockberger PE. Controlled outgrowth of dissociated neurons on patterned substrates. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 8: 4098-120. PMID 3054009  1
1987 Kleinfeld D, Pendergraft DB. "Unlearning" increases the storage capacity of content addressable memories. Biophysical Journal. 51: 47-53. PMID 3801583 DOI: 10.1016/S0006-3495(87)83310-6  1
1986 Kleinfeld D. Sequential state generation by model neural networks. Proceedings of the National Academy of Sciences of the United States of America. 83: 9469-73. PMID 3467316  1
1985 Kleinfeld D, Okamura MY, Fcher G. Electron transfer in reaction centers of Rhodopseudomonas sphaeroides. II. Free energy and kinetic relations between the acceptor states Q(-)A Q(-)B and QAQ(2-)B. Biochimica Et Biophysica Acta. 809: 291-310. PMID 21780325  1
1985 Kleinfeld D, Okamura MY, Feher G. Charge recombination kinetics as a probe of protonation of the primary acceptor in photosynthetic reaction centers. Biophysical Journal. 48: 849-52. PMID 3907729 DOI: 10.1016/S0006-3495(85)83844-3  1
1985 Kleinfeld D, Okamura MY, Feher G. Electron transfer in reaction centers of Rhodopseudomonas sphaeroides. II. Free energy and kinetic relations between the acceptor states QA -QB - and QAQ2- B Bba - Bioenergetics. 809: 291-310. DOI: 10.1016/0005-2728(85)90179-3  1
1984 Kleinfeld D, Abresch EC, Okamura MY, Feher G. Damping of oscillations in the semiquinone absorption in reaction centers after successive flashes determination of the equilibrium between Q(-)AQB and QAQ(-)B. Biochimica Et Biophysica Acta. 765: 406-9. PMID 21780326 DOI: 10.1016/0005-2728(84)90183-X  1
1984 Kleinfeld D, Okamura MY, Feher G. Electron-transfer kinetics in photosynthetic reaction centers cooled to cryogenic temperatures in the charge-separated state: evidence for light-induced structural changes. Biochemistry. 23: 5780-6. PMID 6395882  1
1984 Kleinfeld D, Okamura MY, Feher G. Electron transfer in reaction centers of Rhodopseudomonas sphaeroides. I. Determination of the charge recombination pathway of D+QAQ(-)B and free energy and kinetic relations between Q(-)AQB and QAQ(-)B. Biochimica Et Biophysica Acta. 766: 126-40. PMID 6331502 DOI: 10.1016/0005-2728(84)90224-X  1
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