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Daniel Jarosz - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Chemical & Systems Biology Operations
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Chen YR, Harel I, Singh PP, Ziv I, Moses E, Goshtchevsky U, Machado BE, Brunet A, Jarosz DF. Tissue-specific landscape of protein aggregation and quality control in an aging vertebrate. Developmental Cell. PMID 38810654 DOI: 10.1016/j.devcel.2024.04.014  0.434
2024 Harel I, Chen YR, Ziv I, Singh PP, Heinzer D, Navarro Negredo P, Goshtchevsky U, Wang W, Astre G, Moses E, McKay A, Machado BE, Hebestreit K, Yin S, Sánchez Alvarado A, ... Jarosz DF, et al. Identification of protein aggregates in the aging vertebrate brain with prion-like and phase-separation properties. Cell Reports. 112787. PMID 38810650 DOI: 10.1016/j.celrep.2023.112787  0.776
2023 Chen X, Haribowo AG, Baik AH, Fossati A, Stevenson E, Chen YR, Reyes NS, Peng T, Matthay MA, Traglia M, Pico AR, Jarosz DF, Buchwalter A, Ghaemmaghami S, Swaney DL, et al. In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response. Science Advances. 9: eadj4884. PMID 38064566 DOI: 10.1126/sciadv.adj4884  0.383
2023 Jakobson CM, Aguilar-Rodríguez J, Jarosz DF. Hsp90 shapes adaptation by controlling the fitness consequences of regulatory variation. Biorxiv : the Preprint Server For Biology. PMID 37961536 DOI: 10.1101/2023.10.30.564848  0.796
2022 Chakravarty AK, McGrail DJ, Lozanoski TM, Dunn BS, Shih DJH, Cirillo KM, Cetinkaya SH, Zheng WJ, Mills GB, Yi SS, Jarosz DF, Sahni N. Biomolecular Condensation: A New Phase in Cancer Research. Cancer Discovery. OF1-OF13. PMID 35852417 DOI: 10.1158/2159-8290.CD-21-1605  0.745
2021 Jakobson CM, Jarosz DF. Metabolites control stress granule disassembly. Nature Cell Biology. 23: 1053-1055. PMID 34616025 DOI: 10.1038/s41556-021-00768-w  0.694
2021 Garcia DM, Campbell EA, Jakobson CM, Tsuchiya M, Shaw EA, DiNardo AL, Kaeberlein M, Jarosz DF. A prion accelerates proliferation at the expense of lifespan. Elife. 10. PMID 34545808 DOI: 10.7554/eLife.60917  0.756
2021 Chen YR, Ziv I, Swaminathan K, Elias JE, Jarosz DF. Protein aggregation and the evolution of stress resistance in clinical yeast. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200127. PMID 33866806 DOI: 10.1098/rstb.2020.0127  0.529
2021 Saad S, Jarosz DF. Protein self-assembly: A new frontier in cell signaling. Current Opinion in Cell Biology. 69: 62-69. PMID 33493989 DOI: 10.1016/j.ceb.2020.12.013  0.809
2020 Jakobson CM, Jarosz DF. What Has a Century of Quantitative Genetics Taught Us About Nature's Genetic Toolkit? Annual Review of Genetics. PMID 32897739 DOI: 10.1146/annurev-genet-021920-102037  0.754
2020 Chen YR, Jarosz DF. Both ROSy and Grim: The Landscape of Protein Redox during Aging. Cell Metabolism. 31: 662-663. PMID 32268111 DOI: 10.1016/j.cmet.2020.03.016  0.409
2020 Harvey ZH, Chakravarty AK, Futia RA, Jarosz DF. A Prion Epigenetic Switch Establishes an Active Chromatin State. Cell. PMID 32109413 DOI: 10.1016/j.cell.2020.02.014  0.749
2019 Itakura AK, Chakravarty AK, Jakobson CM, Jarosz DF. Widespread Prion-Based Control of Growth and Differentiation Strategies in Saccharomyces cerevisiae. Molecular Cell. PMID 31757756 DOI: 10.1016/j.molcel.2019.10.027  0.764
2019 Chakravarty AK, Smejkal T, Itakura AK, Garcia DM, Jarosz DF. A Non-amyloid Prion Particle that Activates a Heritable Gene Expression Program. Molecular Cell. PMID 31757755 DOI: 10.1016/J.Molcel.2019.10.028  0.778
2019 Jakobson CM, Jarosz DF. Molecular Origins of Complex Heritability in Natural Genotype-to-Phenotype Relationships. Cell Systems. PMID 31054809 DOI: 10.1016/j.cels.2019.04.002  0.77
2019 Jakobson CM, She R, Jarosz DF. Pervasive function and evidence for selection across standing genetic variation in S. cerevisiae. Nature Communications. 10: 1222. PMID 30874558 DOI: 10.1038/s41467-019-09166-1  0.779
2018 Chakravarty AK, Jarosz DF. More than Just a Phase: Prions at the Crossroads of Epigenetic Inheritance and Evolutionary Change. Journal of Molecular Biology. PMID 30031007 DOI: 10.1016/j.jmb.2018.07.017  0.805
2018 Zabinsky RA, Mason GA, Queitsch C, Jarosz DF. It's not magic - Hsp90 and its effects on genetic and epigenetic variation. Seminars in Cell & Developmental Biology. PMID 29807130 DOI: 10.1016/J.Semcdb.2018.05.015  0.796
2018 Jakobson CM, Jarosz DF. Organizing biochemistry in space and time using prion-like self-assembly. Current Opinion in Systems Biology. 8: 16-24. PMID 29725624 DOI: 10.1016/j.coisb.2017.11.012  0.778
2018 Itakura AK, Futia RA, Jarosz DF. It Pays To Be in Phase. Biochemistry. PMID 29509425 DOI: 10.1021/acs.biochem.8b00205  0.747
2018 She R, Jarosz DF. Mapping Causal Variants with Single-Nucleotide Resolution Reveals Biochemical Drivers of Phenotypic Change. Cell. 172: 478-490.e15. PMID 29373829 DOI: 10.1016/j.cell.2017.12.015  0.788
2017 Harvey ZH, Chen Y, Jarosz DF. Protein-Based Inheritance: Epigenetics beyond the Chromosome. Molecular Cell. PMID 29153393 DOI: 10.1016/j.molcel.2017.10.030  0.537
2017 Jarosz DF, Khurana V. Specification of Physiologic and Disease States by Distinct Proteins and Protein Conformations. Cell. 171: 1001-1014. PMID 29149602 DOI: 10.1016/J.Cell.2017.10.047  0.605
2017 Byers JS, Jarosz DF. High-throughput Screening for Protein-based Inheritance in S. cerevisiae. Journal of Visualized Experiments : Jove. PMID 28809826 DOI: 10.3791/56069  0.812
2017 She R, Chakravarty AK, Layton CJ, Chircus LM, Andreasson JO, Damaraju N, McMahon PL, Buenrostro JD, Jarosz DF, Greenleaf WJ. Comprehensive and quantitative mapping of RNA-protein interactions across a transcribed eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 28325876 DOI: 10.1073/Pnas.1618370114  0.778
2017 Gitler AD, Jarosz DF. Old moms say, no Sir. Science (New York, N.Y.). 355: 1126-1127. PMID 28302810 DOI: 10.1126/Science.Aam9740  0.563
2016 Garcia DM, Dietrich D, Clardy J, Jarosz DF. A common bacterial metabolite elicits prion-based bypass of glucose repression. Elife. 5. PMID 27906649 DOI: 10.7554/Elife.17978  0.505
2016 Chakrabortee S, Byers JS, Jones S, Garcia DM, Bhullar B, Chang A, She R, Lee L, Fremin B, Lindquist S, Jarosz DF. Intrinsically Disordered Proteins Drive Emergence and Inheritance of Biological Traits. Cell. PMID 27693355 DOI: 10.1016/J.Cell.2016.09.017  0.783
2016 Jarosz D. Hsp90: A Global Regulator of the Genotype-to-Phenotype Map in Cancers. Advances in Cancer Research. 129: 225-47. PMID 26916007 DOI: 10.1016/Bs.Acr.2015.11.001  0.417
2014 Garcia DM, Jarosz DF. Rebels with a cause: molecular features and physiological consequences of yeast prions. Fems Yeast Research. 14: 136-47. PMID 25667942 DOI: 10.1111/1567-1364.12116  0.612
2014 Jarosz DF, Brown JC, Walker GA, Datta MS, Ung WL, Lancaster AK, Rotem A, Chang A, Newby GA, Weitz DA, Bisson LF, Lindquist S. Cross-kingdom chemical communication drives a heritable, mutually beneficial prion-based transformation of metabolism. Cell. 158: 1083-93. PMID 25171409 DOI: 10.1016/J.Cell.2014.07.025  0.467
2014 Jarosz DF, Lancaster AK, Brown JC, Lindquist S. An evolutionarily conserved prion-like element converts wild fungi from metabolic specialists to generalists. Cell. 158: 1072-82. PMID 25171408 DOI: 10.1016/J.Cell.2014.07.024  0.484
2014 Byers JS, Jarosz DF. Pernicious pathogens or expedient elements of inheritance: the significance of yeast prions. Plos Pathogens. 10: e1003992. PMID 24722628 DOI: 10.1371/Journal.Ppat.1003992  0.758
2012 Halfmann R, Jarosz DF, Jones SK, Chang A, Lancaster AK, Lindquist S. Prions are a common mechanism for phenotypic inheritance in wild yeasts. Nature. 482: 363-8. PMID 22337056 DOI: 10.1038/Nature10875  0.762
2010 Jarosz DF, Lindquist S. Hsp90 and environmental stress transform the adaptive value of natural genetic variation. Science (New York, N.Y.). 330: 1820-4. PMID 21205668 DOI: 10.1126/science.1195487  0.522
2010 Jarosz DF, Taipale M, Lindquist S. Protein homeostasis and the phenotypic manifestation of genetic diversity: principles and mechanisms. Annual Review of Genetics. 44: 189-216. PMID 21047258 DOI: 10.1146/annurev.genet.40.110405.090412  0.556
2010 Taipale M, Jarosz DF, Lindquist S. HSP90 at the hub of protein homeostasis: emerging mechanistic insights. Nature Reviews. Molecular Cell Biology. 11: 515-28. PMID 20531426 DOI: 10.1038/nrm2918  0.535
2009 Jarosz DF, Cohen SE, Delaney JC, Essigmann JM, Walker GC. A DinB variant reveals diverse physiological consequences of incomplete TLS extension by a Y-family DNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 106: 21137-42. PMID 19948952 DOI: 10.1073/Pnas.0907257106  0.433
2007 Godoy VG, Jarosz DF, Simon SM, Abyzov A, Ilyin V, Walker GC. UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB. Molecular Cell. 28: 1058-70. PMID 18158902 DOI: 10.1016/J.Molcel.2007.10.025  0.474
2007 Jarosz DF, Godoy VG, Walker GC. Proficient and accurate bypass of persistent DNA lesions by DinB DNA polymerases. Cell Cycle (Georgetown, Tex.). 6: 817-22. PMID 17377496 DOI: 10.4161/Cc.6.7.4065  0.39
2007 Neeley WL, Delaney S, Alekseyev YO, Jarosz DF, Delaney JC, Walker GC, Essigmann JM. DNA polymerase V allows bypass of toxic guanine oxidation products in vivo. The Journal of Biological Chemistry. 282: 12741-8. PMID 17322566 DOI: 10.1074/Jbc.M700575200  0.405
2007 Jarosz DF, Beuning PJ, Cohen SE, Walker GC. Y-family DNA polymerases in Escherichia coli. Trends in Microbiology. 15: 70-7. PMID 17207624 DOI: 10.1016/J.Tim.2006.12.004  0.432
2007 Walker GC, Jarosz D, Simon S, Waters L, D'Souza S, Wiltrout ME. Structure and Function of Y Family DNa Polymerases The Faseb Journal. 21. DOI: 10.1096/Fasebj.21.5.A91-B  0.435
2006 Beuning PJ, Simon SM, Godoy VG, Jarosz DF, Walker GC. Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors. Methods in Enzymology. 408: 318-40. PMID 16793378 DOI: 10.1016/S0076-6879(06)08020-7  0.412
2006 Godoy VG, Jarosz DF, Walker FL, Simmons LA, Walker GC. Y-family DNA polymerases respond to DNA damage-independent inhibition of replication fork progression. The Embo Journal. 25: 868-79. PMID 16482223 DOI: 10.1038/Sj.Emboj.7600986  0.397
2006 Jarosz DF, Godoy VG, Delaney JC, Essigmann JM, Walker GC. A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates. Nature. 439: 225-8. PMID 16407906 DOI: 10.1038/Nature04318  0.39
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