Tom Woolf - Related publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Gao YG, McDonald J, Malinina L, Patel DJ, Brown RE. Ceramide-1-Phosphate Transfer Protein Promotes Sphingolipid Reorientation Needed for Binding during Membrane Interaction. Journal of Lipid Research. 100151. PMID 34808193 DOI: 10.1016/j.jlr.2021.100151   
2021 Bouquiaux C, Castet F, Champagne B. Unravelling the Effects of Cholesterol on the Second-Order Nonlinear Optical Responses of Di-8-ANEPPS Dye Embedded in Phosphatidylcholine Lipid Bilayers. The Journal of Physical Chemistry. B. 125: 10195-10212. PMID 34491062 DOI: 10.1021/acs.jpcb.1c05630   
2021 Jemmett PN, Milan DC, Nichols RJ, Cox LR, Horswell SL. Effect of Molecular Structure on Electrochemical Phase Behavior of Phospholipid Bilayers on Au(111). Langmuir : the Acs Journal of Surfaces and Colloids. 37: 11887-11899. PMID 34590852 DOI: 10.1021/acs.langmuir.1c01975   
2021 Ilangumaran Ponmalar I, Sarangi NK, Basu JK, Ayappa KG. Pore Forming Protein Induced Biomembrane Reorganization and Dynamics: A Focused Review. Frontiers in Molecular Biosciences. 8: 737561. PMID 34568431 DOI: 10.3389/fmolb.2021.737561   
2021 Fatafta H, Kav B, Bundschuh BF, Loschwitz J, Strodel B. Disorder-to-order transition of the amyloid-β peptide upon lipid binding. Biophysical Chemistry. 280: 106700. PMID 34784548 DOI: 10.1016/j.bpc.2021.106700   
2021 Zaboli A, Raissi H, Farzad F. Molecular interpretation of the carbon nitride performance as a template for the transport of anti-cancer drug into the biological membrane. Scientific Reports. 11: 18981. PMID 34556792 DOI: 10.1038/s41598-021-98597-2   
2021 François-Martin C, Bacle A, Rothman JE, Fuchs PFJ, Pincet F. Cooperation of Conical and Polyunsaturated Lipids to Regulate Initiation and Processing of Membrane Fusion. Frontiers in Molecular Biosciences. 8: 763115. PMID 34746239 DOI: 10.3389/fmolb.2021.763115   
2021 Zhang S, Ma M, Shao Z, Zhang J, Fu L, Li X, Fang W, Gao L. Structure and Formation Mechanism of Antimicrobial Peptides Temporin B- and L-Induced Tubular Membrane Protrusion. International Journal of Molecular Sciences. 22. PMID 34681675 DOI: 10.3390/ijms222011015   
2021 Thallmair S, Javanainen M, Fábián B, Martinez-Seara H, Marrink SJ. Nonconverged Constraints Cause Artificial Temperature Gradients in Lipid Bilayer Simulations. The Journal of Physical Chemistry. B. 125: 9537-9546. PMID 34398598 DOI: 10.1021/acs.jpcb.1c03665   
2021 Deplazes E, Tafalla BD, Murphy C, White J, Cranfield CG, Garcia A. Calcium Ion Binding at the Lipid-Water Interface Alters the Ion Permeability of Phospholipid Bilayers. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34784471 DOI: 10.1021/acs.langmuir.1c02016   
2021 Swana KW, Nagarajan R, Camesano TA. Atomic Force Microscopy to Characterize Antimicrobial Peptide-Induced Defects in Model Supported Lipid Bilayers. Microorganisms. 9. PMID 34576869 DOI: 10.3390/microorganisms9091975   
2021 Prakash S, Krishna A, Sengupta D. Caveolin induced membrane curvature and lipid clustering: two sides of the same coin? Faraday Discussions. PMID 34545870 DOI: 10.1039/d0fd00062k   
2021 O'Neil PT, Vasquez-Montes V, Swint-Kruse L, Baldwin MR, Ladokhin AS. Spectroscopic evidence of tetanus toxin translocation domain bilayer-induced refolding and insertion. Biophysical Journal. 120: 4763-4776. PMID 34555358 DOI: 10.1016/j.bpj.2021.09.030   
2021 Ni SD, Chen YL, Chen YQ, Zhou K, Ding HM. Molecular Simulation Studies on the Interactions of Bilirubin at Different States with a Lipid Bilayer. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34570511 DOI: 10.1021/acs.langmuir.1c01613   
2021 Kirchhoff H. Proteoliposomes for Studying Lipid-protein Interactions in Membranes . Bio-Protocol. 11: e4197. PMID 34761069 DOI: 10.21769/BioProtoc.4197   
2021 Otieno SA, Qiang W. Roles of key residues and lipid dynamics reveal pHLIP-membrane interactions at intermediate pH. Biophysical Journal. PMID 34624273 DOI: 10.1016/j.bpj.2021.10.001   
2021 Tan H, Zhao Y, Zhao W, Xie H, Chen Y, Tong Q, Yang J. Dynamics properties of membrane proteins in native cell membranes revealed by solid-state NMR spectroscopy. Biochimica Et Biophysica Acta. Biomembranes. 183791. PMID 34624277 DOI: 10.1016/j.bbamem.2021.183791   
2021 Kondrashov OV, Pinigin KV, Akimov SA. Characteristic lengths of transmembrane peptides controlling their tilt and lateral distribution between membrane domains. Physical Review. E. 104: 044411. PMID 34781459 DOI: 10.1103/PhysRevE.104.044411   
2021 Sadeghi M, Noé F. Hydrodynamic coupling for particle-based solvent-free membrane models. The Journal of Chemical Physics. 155: 114108. PMID 34551532 DOI: 10.1063/5.0061623   
2021 Islam MS, Gaston JP, Baker MAB. Fluorescence Approaches for Characterizing Ion Channels in Synthetic Bilayers. Membranes. 11. PMID 34832086 DOI: 10.3390/membranes11110857   
2021 Priyadarshini D, Ivica J, Separovic F, de Planque MRR. Characterisation of cell membrane interaction mechanisms of antimicrobial peptides by electrical bilayer recording. Biophysical Chemistry. 281: 106721. PMID 34808479 DOI: 10.1016/j.bpc.2021.106721   
2021 Park S, Im W, Pastor RW. Developing Initial Conditions for Simulations of Asymmetric Membranes: A Practical Recommendation. Biophysical Journal. PMID 34653389 DOI: 10.1016/j.bpj.2021.10.009   
2021 Liu J, Wang Y, Wang C, Gao J, Cui W, Zhao B, Zhang L, He H, Zhang S. Thermodynamical Origin of Nonmonotonic Inserting Behavior of Imidazole Ionic Liquids into the Lipid Bilayer. The Journal of Physical Chemistry Letters. 9926-9932. PMID 34613726 DOI: 10.1021/acs.jpclett.1c02566   
2021 Sun S, Xia Y, Liu J, Dou Y, Yang K, Yuan B, Kang Z. Real-time monitoring the interfacial dynamic processes at model cell membranes: Taking cell penetrating peptide TAT as an example. Journal of Colloid and Interface Science. PMID 34839914 DOI: 10.1016/j.jcis.2021.11.076   
2021 Hanna C, Kriegesmann J, Dowman L, Becker C, Payne RJ. Chemical Synthesis and Semisynthesis of Lipidated Proteins. Angewandte Chemie (International Ed. in English). PMID 34611966 DOI: 10.1002/anie.202111266   
2021 Oliveira RG, Paolorossi M, Cavalcanti LP, Malfatti-Gasperini A, Montich GG. Periodic bilayer organization in the complexes of Beta-2 Glycoprotein I with anionic lipid membranes. Colloids and Surfaces. B, Biointerfaces. 208: 112118. PMID 34547703 DOI: 10.1016/j.colsurfb.2021.112118   
2021 Chng CP, Cho NJ, Hsia KJ, Huang C. Role of Membrane Stretch in Adsorption of Antiviral Peptides onto Lipid Membranes and Membrane Pore Formation. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34724382 DOI: 10.1021/acs.langmuir.1c02067   
2021 Tang L, Li Y, Zhong C, Deng X, Wang X. Plant Sterol Clustering Correlates with Membrane Microdomains as Revealed by Optical and Computational Microscopy. Membranes. 11. PMID 34677513 DOI: 10.3390/membranes11100747   
2021 Drabik D, Czogalla A. Simple Does Not Mean Trivial: Behavior of Phosphatidic Acid in Lipid Mono- and Bilayers. International Journal of Molecular Sciences. 22. PMID 34768953 DOI: 10.3390/ijms222111523   
2021 Tran N, Oh Y, Sutherland M, Cui Q, Hong M. Cholesterol-Mediated Clustering of the HIV Fusion Protein gp41 in Lipid Bilayers. Journal of Molecular Biology. 167345. PMID 34762895 DOI: 10.1016/j.jmb.2021.167345   
2021 Song ES, Oh Y, Sung BJ. Interdomain exchange and the flip-flop of cholesterol in ternary component lipid membranes and their effects on heterogeneous cholesterol diffusion. Physical Review. E. 104: 044402. PMID 34781553 DOI: 10.1103/PhysRevE.104.044402   
2021 Kallemeijn WW, Lanyon-Hogg T, Panyain N, Goya Grocin A, Ciepla P, Morales-Sanfrutos J, Tate EW. Proteome-wide analysis of protein lipidation using chemical probes: in-gel fluorescence visualization, identification and quantification of N-myristoylation, N- and S-acylation, O-cholesterylation, S-farnesylation and S-geranylgeranylation. Nature Protocols. 16: 5083-5122. PMID 34707257 DOI: 10.1038/s41596-021-00601-6   
2021 Ma W, Jiang X, Dou Y, Zhang Z, Li J, Yuan B, Yang K. Biophysical Impact of Lipid A Modification Caused by Mobile Colistin Resistance Gene on Bacterial Outer Membranes. The Journal of Physical Chemistry Letters. 11629-11635. PMID 34817187 DOI: 10.1021/acs.jpclett.1c03295   
2021 Chen Y, Liao M, Ma K, Wang Z, Demé B, Penfold J, Lu JR, R P Webster J, Li P. Implications of surfactant hydrophobic chain architecture on the Surfactant-Skin lipid model interaction. Journal of Colloid and Interface Science. 608: 405-415. PMID 34628313 DOI: 10.1016/j.jcis.2021.09.098   
2021 Lewis-Laurent A, Doktorova M, Heberle FA, Marquardt D. Vesicle Viewer: Online visualization and analysis of small-angle scattering from lipid vesicles. Biophysical Journal. PMID 34571013 DOI: 10.1016/j.bpj.2021.09.018   
2021 Sahonero-Canavesi DX, Villanueva L, Bale NJ, Bosviel J, Koenen M, Hopmans EC, Sinninghe Damsté JS. Changes in the distribution of membrane lipids during growth of at different temperatures: Indications for the potential mechanism of biosynthesis of ether-bound diabolic acid (membrane-spanning) lipids. Applied and Environmental Microbiology. AEM0176321. PMID 34731048 DOI: 10.1128/AEM.01763-21   
2021 Schnorr SL, Berry D. Lipid synthesis at the trophic base as the source for energy management to build complex structures. Current Opinion in Biotechnology. 73: 364-373. PMID 34735986 DOI: 10.1016/j.copbio.2021.09.014   
2021 Tang S, Davoudi Z, Wang G, Xu Z, Rehman T, Prominski A, Tian B, Bratlie KM, Peng H, Wang Q. Soft materials as biological and artificial membranes. Chemical Society Reviews. PMID 34636824 DOI: 10.1039/d1cs00029b   
2021 Wu F, Jin X, Guan Z, Lin J, Cai C, Wang L, Li Y, Lin S, Xu P, Gao L. Membrane Nanopores Induced by Nanotoroids via an Insertion and Pore-Forming Pathway. Nano Letters. PMID 34623162 DOI: 10.1021/acs.nanolett.1c01331   
2021 Van Cleave C, Koehn JT, Pereira CS, Haase AA, Peters BJ, Croslow SW, McLaughlin KG, Werst KR, Goach AL, Crick DC, Arantes GM, Crans DC. Interactions of Truncated Menaquinones in Lipid Monolayers and Bilayers. International Journal of Molecular Sciences. 22. PMID 34575937 DOI: 10.3390/ijms22189755   
2021 Ferraris Q, Alcazar A, Qian MC. Profiling polar lipids in whey protein phospholipid concentrate by LC-HRMS/MS. Food Chemistry. 131495. PMID 34776307 DOI: 10.1016/j.foodchem.2021.131495   
2021 Canner SW, Feller SE, Wassall SR. Molecular Organization of a Raft-like Domain in a Polyunsaturated Phospholipid Bilayer: A Supervised Machine Learning Analysis of Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 34812629 DOI: 10.1021/acs.jpcb.1c06511   
2021 Yoda T, Yamada Y, Chounan Y. Effects of isovaleraldehyde on cell-sized lipid bilayer vesicles. Biophysical Chemistry. 279: 106698. PMID 34644672 DOI: 10.1016/j.bpc.2021.106698   
2021 Kuo JC, Paszek MJ. Glycocalyx Curving the Membrane: Forces Emerging from the Cell Exterior. Annual Review of Cell and Developmental Biology. 37: 257-283. PMID 34613816 DOI: 10.1146/annurev-cellbio-120219-054401   
2021 Claro B, Peón A, González-Freire E, Goormaghtigh E, Amorín M, Granja JR, Garcia-Fandiño R, Bastos M. Macromolecular assembly and membrane activity of antimicrobial D,L-α-Cyclic peptides. Colloids and Surfaces. B, Biointerfaces. 208: 112086. PMID 34492602 DOI: 10.1016/j.colsurfb.2021.112086   
2021 Rocha S, Kumar R, Nordén B, Wittung-Stafshede P. Orientation of α-Synuclein at Negatively Charged Lipid Vesicles: Linear Dichroism Reveals Time-Dependent Changes in Helix Binding Mode. Journal of the American Chemical Society. PMID 34748321 DOI: 10.1021/jacs.1c05344   
2021 Sengupta N, Mondal AK, Mishra S, Chattopadhyay K, Dutta S. Single-particle cryo-EM reveals conformational variability of the oligomeric VCC β-barrel pore in a lipid bilayer. The Journal of Cell Biology. 220. PMID 34617964 DOI: 10.1083/jcb.202102035   
2021 Ge Y, Liu J, Dou Y, Chen Z, Li Z, Yang K, Yuan B, Kang Z. A real-time and in-situ monitoring of the molecular interactions between drug carrier polymers and a phospholipid membrane. Colloids and Surfaces. B, Biointerfaces. 209: 112161. PMID 34700114 DOI: 10.1016/j.colsurfb.2021.112161   
2021 Hu Z, Martí J, Lu H. Structure of benzothiadiazine at zwitterionic phospholipid cell membranes. The Journal of Chemical Physics. 155: 154303. PMID 34686044 DOI: 10.1063/5.0065163   
2021 Quan X, Zhao D, Zhou J. The interplay between surface-functionalized gold nanoparticles and negatively charged lipid vesicles. Physical Chemistry Chemical Physics : Pccp. 23: 23526-23536. PMID 34642720 DOI: 10.1039/d1cp01903a