Shivam Mukherjee, Ph.D. - Publications

Affiliations: 
2014 Chemistry Stony Brook University, Stony Brook, NY, United States 

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Pande P, Ji S, Mukherjee S, Schärer OD, Tretyakova NY, Basu AK. Mutagenicity of a model DNA-peptide cross-link in human cells: Roles of translesion synthesis DNA polymerases. Chemical Research in Toxicology. PMID 27951635 DOI: 10.1021/Acs.Chemrestox.6B00397  0.681
2016 Wickramaratne S, Ji S, Mukherjee S, Su Y, Pence MG, Lior-Hoffmann L, Fu I, Broyde S, Guengerich FP, Distefano M, Scharer OD, Sham YY, Tretyakova N. Bypass of DNA-Protein Cross-links Conjugated to the 7-Deazaguanine Position of DNA by Translesion Synthesis Polymerases. The Journal of Biological Chemistry. PMID 27621316 DOI: 10.1074/Jbc.M116.745257  0.728
2016 Khund-Sayeed S, He X, Holzberg T, Wang J, Rajagopal D, Upadhyay S, Durell SR, Mukherjee S, Weirauch MT, Rose R, Vinson C. 5-Hydroxymethylcytosine in E-box motifs ACAT|GTG and ACAC|GTG increases DNA-binding of the B-HLH transcription factor TCF4. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 27485769 DOI: 10.1039/C6Ib00079G  0.406
2016 Roy U, Mukherjee S, Sharma A, Frank EG, Schärer OD. The structure and duplex context of DNA interstrand crosslinks affects the activity of DNA polymerase η. Nucleic Acids Research. PMID 27257072 DOI: 10.1093/Nar/Gkw485  0.74
2016 Samanta S, Raghunathan D, Mukherjee S. Effect of temperature on the structure and hydration layer of TATA-box DNA: A molecular dynamics simulation study. Journal of Molecular Graphics & Modelling. 66: 9-19. PMID 27017424 DOI: 10.1016/J.Jmgm.2016.03.005  0.387
2016 Paul BK, Ghosh N, Mukherjee S. Interaction of an anti-cancer photosensitizer with a genomic DNA: From base pair specificity and thermodynamic landscape to tuning the rate of detergent-sequestered dissociation. Journal of Colloid and Interface Science. 470: 211-220. PMID 26945117 DOI: 10.1016/J.Jcis.2016.02.059  0.396
2015 Su F, Bhattacharya S, Abdisalaam S, Mukherjee S, Yajima H, Yang Y, Mishra R, Srinivasan K, Ghose S, Chen DJ, Yannone SM, Asaithamby A. Replication stress induced site-specific phosphorylation targets WRN to the ubiquitin-proteasome pathway. Oncotarget. PMID 26695548 DOI: 10.18632/Oncotarget.6659  0.377
2015 Pizzolato J, Mukherjee S, Schärer OD, Jiricny J. FANCD2-associated Nuclease 1, but Not Exonuclease 1 or Flap Endonuclease 1, Is Able to Unhook DNA Interstrand Cross-links in Vitro. The Journal of Biological Chemistry. 290: 22602-11. PMID 26221031 DOI: 10.1074/Jbc.M115.663666  0.678
2014 Mukherjee S, Guainazzi A, Schärer OD. Synthesis of structurally diverse major groove DNA interstrand crosslinks using three different aldehyde precursors. Nucleic Acids Research. 42: 7429-35. PMID 24782532 DOI: 10.1093/Nar/Gku328  0.585
2014 Hodskinson MR, Silhan J, Crossan GP, Garaycoechea JI, Mukherjee S, Johnson CM, Schärer OD, Patel KJ. Mouse SLX4 is a tumor suppressor that stimulates the activity of the nuclease XPF-ERCC1 in DNA crosslink repair. Molecular Cell. 54: 472-84. PMID 24726326 DOI: 10.1016/J.Molcel.2014.03.014  0.718
2013 Wickramaratne S, Mukherjee S, Villalta PW, Schärer OD, Tretyakova NY. Synthesis of sequence-specific DNA-protein conjugates via a reductive amination strategy. Bioconjugate Chemistry. 24: 1496-506. PMID 23885807 DOI: 10.1021/Bc400018U  0.731
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