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Vinhthuy T. Phan, Ph.D. - Publications

Affiliations: 
2003 Stony Brook University, Stony Brook, NY, United States 
Area:
Algorithms, Computational Biology, Large-scale Text Analytics and Sentiment Analysis, Social Trends Analysis, Combinatorial Computing Environments
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Tran Q, Phan V. Assembling Reads Improves Taxonomic Classification of Species. Genes. 11. PMID 32824429 DOI: 10.3390/Genes11080946  0.318
2019 Phan V, Pham DT, Melton C, Ramsey A, Daigle BJ, Mandel JR. icHET: Interactive Visualization of Cytoplasmic Heteroplasmy. Bioinformatics (Oxford, England). PMID 31038667 DOI: 10.1093/Bioinformatics/Btz300  0.301
2018 Vo NS, Phan V. Leveraging known genomic variants to improve detection of variants, especially close-by Indels. Bioinformatics (Oxford, England). PMID 29590294 DOI: 10.1093/Bioinformatics/Bty183  0.329
2017 Tran Q, Pham DT, Phan V. Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities. Bmc Bioinformatics. 18: 499. PMID 29297282 DOI: 10.1186/S12859-017-1901-8  0.339
2017 Pham DT, Gao S, Phan V. An accurate and fast alignment-free method for profiling microbial communities. Journal of Bioinformatics and Computational Biology. 1740001. PMID 28345370 DOI: 10.1142/S0219720017400017  0.341
2016 Tran Q, Gao S, Phan V. Analysis of optimal alignments unfolds aligners' bias in existing variant profiles. Bmc Bioinformatics. 17: 349. PMID 27766935 DOI: 10.1186/S12859-016-1216-1  0.382
2015 Phan V, Gao S, Tran Q, Vo NS. How genome complexity can explain the difficulty of aligning reads to genomes. Bmc Bioinformatics. 16: S3. PMID 26678826 DOI: 10.1186/1471-2105-16-S17-S3  0.313
2015 Tran Q, Gao S, Vo NS, Phan V. A linear model for predicting performance of short-read aligners using genome complexity Bmc Bioinformatics. 16: 17. DOI: 10.1186/1471-2105-16-S15-P17  0.352
2014 Vo NS, Tran Q, Niraula N, Phan V. RandAL: a randomized approach to aligning DNA sequences to reference genomes. Bmc Genomics. 15: S2. PMID 25081493 DOI: 10.1186/1471-2164-15-S5-S2  0.384
2014 O’kello KL, Phan V. Determining gene response patterns of time series gene expression data using R Bmc Bioinformatics. 15. DOI: 10.1186/1471-2105-15-S10-P24  0.335
2014 Tran Q, Phan V. Alignment of short reads to multiple genomes using hashing Bmc Bioinformatics. 15. DOI: 10.1186/1471-2105-15-S10-P23  0.345
2014 Vo NS, Phan V. Exploiting the bootstrap method to analyze patterns of gene expression Bmc Bioinformatics. 15. DOI: 10.1186/1471-2105-15-S10-P19  0.313
2013 Vo NS, Sutter TR, Phan V. mDAG: A web tool for analyzing, visualizing, and interpreting response patterns in gene expression data with multiple treatments Advances in Bioscience and Biotechnology. 4: 706-709. DOI: 10.4236/Abb.2013.46093  0.313
2011 Roy S, Heinrich K, Phan V, Berry MW, Homayouni R. Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets. Bmc Bioinformatics. 12: S19. PMID 22165960 DOI: 10.1186/1471-2105-12-S10-S19  0.314
2011 Phan VT, Vo NS, Sutter TR. mDAG: a web-based tool for analyzing microarray data with multiple treatments Bmc Bioinformatics. 12. DOI: 10.1186/1471-2105-12-S7-A7  0.308
2004 Phan V, Skiena S. An improved time-sensitive metaheuristic framework for combinatorial optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3059: 432-445. DOI: 10.1007/978-3-540-24838-5_32  0.527
2003 Phan V, Skiena S, Sumazin P. A model for analyzing black-box optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2748: 424-438.  0.478
2002 Phan V, Sumazin P, Skiena S. A time-sensitive system for black-box combinatorial optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2409: 16-28.  0.475
2001 Phan VT, Skiena SS. Dealing with errors in interactive sequencing by hybridization. Bioinformatics (Oxford, England). 17: 862-70. PMID 11673230 DOI: 10.1093/Bioinformatics/17.10.862  0.504
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