Chris Gaiteri - Publications

Sage Bionetworks 
dynamical systems, gene networks

17/43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Tasaki S, Gaiteri C, Mostafavi S, Wang Y. Deep learning decodes the principles of differential gene expression. Nature Machine Intelligence. 2: 376-386. PMID 32671330 DOI: 10.1038/s42256-020-0201-6  0.56
2018 Tasaki S, Gaiteri C, Mostafavi S, Yu L, Wang Y, De Jager PL, Bennett DA. Multi-omic Directed Networks Describe Features of Gene Regulation in Aged Brains and Expand the Set of Genes Driving Cognitive Decline. Frontiers in Genetics. 9: 294. PMID 30140277 DOI: 10.3389/fgene.2018.00294  0.56
2018 Gaiteri C, Dawe R, Mostafavi S, Blizinsky KD, Tasaki S, Komashko V, Yu L, Wang Y, Schneider JA, Arfanakis K, De Jager PL, Bennett DA. Gene expression and DNA methylation are extensively coordinated with MRI-based brain microstructural characteristics. Brain Imaging and Behavior. PMID 29934819 DOI: 10.1007/s11682-018-9910-4  0.56
2016 Gaiteri C, Mostafavi S, Honey CJ, De Jager PL, Bennett DA. Genetic variants in Alzheimer disease - molecular and brain network approaches. Nature Reviews. Neurology. PMID 27282653 DOI: 10.1038/nrneurol.2016.84  1
2016 Kuzmin K, Gaiteri C, Szymanski BK. Synergy landscapes: A multilayer network for collaboration in biological research Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9564: 205-212. DOI: 10.1007/978-3-319-28361-6_18  1
2015 Gaiteri C, Chen M, Szymanski B, Kuzmin K, Xie J, Lee C, Blanche T, Chaibub Neto E, Huang SC, Grabowski T, Madhyastha T, Komashko V. Identifying robust communities and multi-community nodes by combining top-down and bottom-up approaches to clustering. Scientific Reports. 5: 16361. PMID 26549511 DOI: 10.1038/srep16361  1
2015 Yang J, Yu L, Gaiteri C, Srivastava GP, Chibnik LB, Leurgans SE, Schneider JA, Meissner A, De Jager PL, Bennett DA. Association of DNA methylation in the brain with age in older persons is confounded by common neuropathologies. The International Journal of Biochemistry & Cell Biology. PMID 26003740 DOI: 10.1016/j.biocel.2015.05.009  1
2015 Tasaki S, Sauerwine B, Hoff B, Toyoshiba H, Gaiteri C, Chaibub Neto E. Bayesian network reconstruction using systems genetics data: comparison of MCMC methods. Genetics. 199: 973-89. PMID 25631319 DOI: 10.1534/genetics.114.172619  1
2014 Nichols TW, Gaiteri C. Morton's foot and pyridoxal 5'-phosphate deficiency: genetically linked traits. Medical Hypotheses. 83: 644-8. PMID 25441836 DOI: 10.1016/j.mehy.2014.09.003  1
2014 Gaiteri C, Ding Y, French B, Tseng GC, Sibille E. Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders. Genes, Brain, and Behavior. 13: 13-24. PMID 24320616 DOI: 10.1111/gbb.12106  1
2013 Zhang B, Gaiteri C, Bodea LG, Wang Z, McElwee J, Podtelezhnikov AA, Zhang C, Xie T, Tran L, Dobrin R, Fluder E, Clurman B, Melquist S, Narayanan M, Suver C, et al. Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease. Cell. 153: 707-20. PMID 23622250 DOI: 10.1016/j.cell.2013.03.030  1
2013 Giraldo M, Lopera F, Siniard AL, Corneveaux JJ, Schrauwen I, Carvajal J, Muñoz C, Ramirez-Restrepo M, Gaiteri C, Myers AJ, Caselli RJ, Kosik KS, Reiman EM, Huentelman MJ. Variants in triggering receptor expressed on myeloid cells 2 are associated with both behavioral variant frontotemporal lobar degeneration and Alzheimer's disease. Neurobiology of Aging. 34: 2077.e11-8. PMID 23582655 DOI: 10.1016/j.neurobiolaging.2013.02.016  1
2011 Gaiteri C, Sibille E. Differentially expressed genes in major depression reside on the periphery of resilient gene coexpression networks. Frontiers in Neuroscience. 5: 95. PMID 21922000 DOI: 10.3389/fnins.2011.00095  1
2011 Gaiteri C, Rubin JE. The interaction of intrinsic dynamics and network topology in determining network burst synchrony. Frontiers in Computational Neuroscience. 5: 10. PMID 21373358 DOI: 10.3389/fncom.2011.00010  1
2010 Gaiteri C, Guilloux JP, Lewis DA, Sibille E. Altered gene synchrony suggests a combined hormone-mediated dysregulated state in major depression. Plos One. 5: e9970. PMID 20376317 DOI: 10.1371/journal.pone.0009970  1
2010 Guilloux JP, Gaiteri C, Sibille E. Network analysis of positional candidate genes of schizophrenia highlights...more than... myelin-related pathways. Molecular Psychiatry. 15: 786-8. PMID 20351722 DOI: 10.1038/mp.2009.68  1
2009 Sibille E, Wang Y, Joeyen-Waldorf J, Gaiteri C, Surget A, Oh S, Belzung C, Tseng GC, Lewis DA. A molecular signature of depression in the amygdala. The American Journal of Psychiatry. 166: 1011-24. PMID 19605536 DOI: 10.1176/appi.ajp.2009.08121760  1
Low-probability matches
2017 Yu L, Lutz MW, Wilson RS, Burns DK, Roses AD, Saunders AM, Gaiteri C, De Jager PL, Barnes LL, Bennett DA. TOMM40'523 variant and cognitive decline in older persons with APOE ε3/3 genotype. Neurology. PMID 28108637 DOI: 10.1212/WNL.0000000000003614  0.04
2021 Patrick E, Olah M, Taga M, Klein HU, Xu J, White CC, Felsky D, Agrawal S, Gaiteri C, Chibnik LB, Mostafavi S, Schneider JA, Bennett DA, Bradshaw EM, De Jager PL. A cortical immune network map identifies distinct microglial transcriptional programs associated with β-amyloid and Tau pathologies. Translational Psychiatry. 11: 50. PMID 33446646 DOI: 10.1038/s41398-020-01175-9  0.01
2020 Heuer SE, Neuner SM, Hadad N, O'Connell KMS, Williams RW, Philip VM, Gaiteri C, Kaczorowski CC. Identifying the molecular systems that influence cognitive resilience to Alzheimer's disease in genetically diverse mice. Learning & Memory (Cold Spring Harbor, N.Y.). 27: 355-371. PMID 32817302 DOI: 10.1101/lm.051839.120  0.01
2020 Patrick E, Taga M, Ergun A, Ng B, Casazza W, Cimpean M, Yung C, Schneider JA, Bennett DA, Gaiteri C, De Jager PL, Bradshaw EM, Mostafavi S. Deconvolving the contributions of cell-type heterogeneity on cortical gene expression. Plos Computational Biology. 16: e1008120. PMID 32804935 DOI: 10.1371/journal.pcbi.1008120  0.01
2020 Wan YW, Al-Ouran R, Mangleburg CG, Perumal TM, Lee TV, Allison K, Swarup V, Funk CC, Gaiteri C, Allen M, Wang M, Neuner SM, Kaczorowski CC, Philip VM, Howell GR, et al. Meta-Analysis of the Alzheimer's Disease Human Brain Transcriptome and Functional Dissection in Mouse Models. Cell Reports. 32: 107908. PMID 32668255 DOI: 10.1016/j.celrep.2020.107908  0.01
2020 Yang HS, White CC, Klein HU, Yu L, Gaiteri C, Ma Y, Felsky D, Mostafavi S, Petyuk VA, Sperling RA, Ertekin-Taner N, Schneider JA, Bennett DA, De Jager PL. Genetics of Gene Expression in the Aging Human Brain Reveal TDP-43 Proteinopathy Pathophysiology. Neuron. PMID 32526197 DOI: 10.1016/j.neuron.2020.05.010  0.01
2019 Geerts H, Wikswo J, van der Graaf PH, Bai JPF, Gaiteri C, Bennett D, Swalley SE, Schuck E, Kaddurah-Daouk R, Tsaioun K, Pelleymounter M. Quantitative Systems Pharmacology (QSP) for Neuroscience Drug Discovery and Development: Current Status, Opportunities and Challenges. Cpt: Pharmacometrics & Systems Pharmacology. PMID 31674729 DOI: 10.1002/psp4.12478  0.01
2019 Tasaki S, Gaiteri C, Petyuk VA, Blizinsky KD, De Jager PL, Buchman AS, Bennett DA. Genetic risk for Alzheimer's dementia predicts motor deficits through multi-omic systems in older adults. Translational Psychiatry. 9: 241. PMID 31582723 DOI: 10.1038/s41398-019-0577-4  0.01
2019 Kim N, Yu L, Dawe R, Petyuk VA, Gaiteri C, De Jager PL, Schneider JA, Arfanakis K, Bennett DA. Microstructural changes in the brain mediate the association of AK4, IGFBP5, HSPB2, and ITPK1 with cognitive decline. Neurobiology of Aging. 84: 17-25. PMID 31479860 DOI: 10.1016/j.neurobiolaging.2019.07.013  0.01
2019 Ng B, Casazza W, Patrick E, Tasaki S, Novakovsky G, Felsky D, Ma Y, Bennett DA, Gaiteri C, De Jager PL, Mostafavi S. Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain. American Journal of Human Genetics. PMID 31447098 DOI: 10.1016/j.ajhg.2019.07.016  0.01
2019 Buchman AS, Yu L, Petyuk VA, Gaiteri C, Tasaki S, Blizinsky KD, Schneider JA, De Jager PL, Bennett DA. Cognition may link cortical IGFBP5 levels with motor function in older adults. Plos One. 14: e0220968. PMID 31404102 DOI: 10.1371/journal.pone.0220968  0.01
2019 Yu L, Petyuk VA, Tasaki S, Boyle PA, Gaiteri C, Schneider JA, De Jager PL, Bennett DA. Association of Cortical β-Amyloid Protein in the Absence of Insoluble Deposits With Alzheimer Disease. Jama Neurology. PMID 31009033 DOI: 10.1001/jamaneurol.2019.0834  0.01
2019 Buchman AS, Yu L, Wilson RS, Lim A, Dawe RJ, Gaiteri C, Leurgans SE, Schneider JA, Bennett DA. Physical activity, common brain pathologies, and cognition in community-dwelling older adults. Neurology. PMID 30651386 DOI: 10.1212/WNL.0000000000006954  0.01
2018 Tasaki S, Gaiteri C, Mostafavi S, De Jager PL, Bennett DA. The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia. Frontiers in Neuroscience. 12: 699. PMID 30349450 DOI: 10.3389/fnins.2018.00699  0.01
2018 Lamar M, Yu L, Rubin LH, James BD, Barnes LL, Farfel JM, Gaiteri C, Buchman AS, Bennett DA, Schneider JA. APOE genotypes as a risk factor for age-dependent accumulation of cerebrovascular disease in older adults. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 30321502 DOI: 10.1016/j.jalz.2018.08.007  0.01
2018 Lim ASP, Gaiteri C, Yu L, Sohail S, Swardfager W, Tasaki S, Schneider JA, Paquet C, Stuss DT, Masellis M, Black SE, Hugon J, Buchman AS, Barnes LL, Bennett DA, et al. Seasonal plasticity of cognition and related biological measures in adults with and without Alzheimer disease: Analysis of multiple cohorts. Plos Medicine. 15: e1002647. PMID 30180184 DOI: 10.1371/journal.pmed.1002647  0.01
2018 De Jager PL, Ma Y, McCabe C, Xu J, Vardarajan BN, Felsky D, Klein HU, White CC, Peters MA, Lodgson B, Nejad P, Tang A, Mangravite LM, Yu L, Gaiteri C, et al. A multi-omic atlas of the human frontal cortex for aging and Alzheimer's disease research. Scientific Data. 5: 180142. PMID 30084846 DOI: 10.1038/sdata.2018.142  0.01
2018 Felsky D, Patrick E, Schneider JA, Mostafavi S, Gaiteri C, Patsopoulos N, Bennett DA, De Jager PL. Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain. Molecular Neurodegeneration. 13: 38. PMID 30041668 DOI: 10.1186/s13024-018-0272-6  0.01
2018 Yu L, Petyuk VA, Gaiteri C, Mostafavi S, Young-Pearse T, Shah RC, Buchman AS, Schneider JA, Piehowski PD, Sontag RL, Fillmore TL, Shi T, Smith RD, De Jager PL, Bennett DA. Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia. Annals of Neurology. PMID 29908079 DOI: 10.1002/ana.25266  0.01
2018 Mostafavi S, Gaiteri C, Sullivan SE, White CC, Tasaki S, Xu J, Taga M, Klein HU, Patrick E, Komashko V, McCabe C, Smith R, Bradshaw EM, Root DE, Regev A, et al. A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer's disease. Nature Neuroscience. 21: 811-819. PMID 29802388 DOI: 10.1038/s41593-018-0154-9  0.01
2018 Oveisgharan S, Buchman AS, Yu L, Farfel J, Hachinski V, Gaiteri C, De Jager PL, Schneider JA, Bennett DA. ε2ε4 genotype, incident AD and MCI, cognitive decline, and AD pathology in older adults. Neurology. PMID 29752306 DOI: 10.1212/WNL.0000000000005677  0.01
2017 Yu L, Dawe RJ, Boyle PA, Gaiteri C, Yang J, Buchman AS, Schneider JA, Arfanakis K, De Jager PL, Bennett DA. Association Between Brain Gene Expression, DNA Methylation, and Alteration of Ex Vivo Magnetic Resonance Imaging Transverse Relaxation in Late-Life Cognitive Decline. Jama Neurology. PMID 29084334 DOI: 10.1001/jamaneurol.2017.2807  0.01
2017 Dawe RJ, Leurgans SE, Yang J, Bennett JM, Hausdorff JM, Lim AS, Gaiteri C, Bennett DA, Buchman AS. Association between Quantitative Gait and Balance Measures and Total Daily Physical Activity in Community-Dwelling Older Adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 28957994 DOI: 10.1093/gerona/glx167  0.01
2017 Ng B, White CC, Klein HU, Sieberts SK, McCabe C, Patrick E, Xu J, Yu L, Gaiteri C, Bennett DA, Mostafavi S, De Jager PL. An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome. Nature Neuroscience. PMID 28869584 DOI: 10.1038/nn.4632  0.01
2017 Yu L, Lutz MW, Wilson RS, Burns DK, Roses AD, Saunders AM, Yang J, Gaiteri C, De Jager PL, Barnes LL, Bennett DA. APOE ε4-TOMM40 '523 haplotypes and the risk of Alzheimer's disease in older Caucasian and African Americans. Plos One. 12: e0180356. PMID 28672022 DOI: 10.1371/journal.pone.0180356  0.01
2016 Kuzmin K, Lu X, Mukherjee PS, Zhuang J, Gaiteri C, Szymanski BK. Supporting novel biomedical research via multilayer collaboration networks. Applied Network Science. 1: 11. PMID 30533503 DOI: 10.1007/s41109-016-0015-y  0.01
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