| Year |
Citation |
Score |
| 2021 |
Zakrevsky P, Calkins E, Kao YL, Singh G, Keleshian VL, Baudrey S, Jaeger L. In vitro selected GUAA tetraloop-binding receptors with structural plasticity and evolvability towards natural RNA structural modules. Nucleic Acids Research. PMID 33524109 DOI: 10.1093/nar/gkab021 |
0.42 |
|
| 2020 |
Huang S, Aleksashin NA, Loveland AB, Klepacki D, Reier K, Kefi A, Szal T, Remme J, Jaeger L, Vázquez-Laslop N, Korostelev AA, Mankin AS. Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly. Nature Communications. 11: 2900. PMID 32518240 DOI: 10.1038/S41467-020-16694-8 |
0.324 |
|
| 2020 |
Zakrevsky P, Kasprzak WK, Heinz WF, Wu W, Khant H, Bindewald E, Dorjsuren N, Fields EA, de Val N, Jaeger L, Shapiro BA. Truncated tetrahedral RNA nanostructures exhibit enhanced features for delivery of RNAi substrates. Nanoscale. PMID 31932830 DOI: 10.1039/C9Nr08197F |
0.701 |
|
| 2020 |
Kasprzak WK, Zakrevsky P, Bindewald E, Heinz WF, Wu W, Kahnt H, Dorjsuren N, Fields EA, de Val N, Jaeger L, Shapiro BA. Design and Modeling of a Tetrahedron Nanostructure for Enhanced Delivery of RNAi Substrates Biophysical Journal. 118: 623a. DOI: 10.1016/J.Bpj.2019.11.3360 |
0.323 |
|
| 2019 |
McCown PJ, Wang MC, Jaeger L, Brown JA. Secondary Structural Model of Human MALAT1 Reveals Multiple Structure-Function Relationships. International Journal of Molecular Sciences. 20. PMID 31717552 DOI: 10.3390/Ijms20225610 |
0.492 |
|
| 2019 |
Mitchell C, Polanco JA, DeWald L, Kress D, Jaeger L, Grabow WW. Responsive self-assembly of tectoRNAs with loop-receptor interactions from the tetrahydrofolate (THF) riboswitch. Nucleic Acids Research. PMID 31045210 DOI: 10.1093/Nar/Gkz304 |
0.578 |
|
| 2019 |
O'Hara JM, Marashi D, Morton S, Jaeger L, Grabow WW. Optimization of the Split-Spinach Aptamer for Monitoring Nanoparticle Assembly Involving Multiple Contiguous RNAs. Nanomaterials (Basel, Switzerland). 9. PMID 30845655 DOI: 10.3390/Nano9030378 |
0.708 |
|
| 2018 |
Calkins ER, Zakrevsky P, Keleshian VL, Aguilar EG, Geary C, Jaeger L. Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome. Nucleic Acids Research. PMID 30418638 DOI: 10.1093/Nar/Gky1111 |
0.749 |
|
| 2018 |
Sharma IM, Rappé MC, Addepalli B, Grabow WW, Zhuang Z, Abeysirigunawardena SC, Limbach PA, Jaeger L, Woodson SA. A metastable rRNA junction essential for bacterial 30S biogenesis. Nucleic Acids Research. 46: 5182-5194. PMID 29850893 DOI: 10.1093/Nar/Gky120 |
0.702 |
|
| 2018 |
Watkins AM, Geniesse C, Kladwang W, Zakrevsky P, Jaeger L, Das R. Blind prediction of noncanonical RNA structure at atomic accuracy. Science Advances. 4: eaar5316. PMID 29806027 DOI: 10.1126/Sciadv.Aar5316 |
0.604 |
|
| 2017 |
Geary C, Chworos A, Verzemnieks E, Voss NR, Jaeger L. Composing RNA nanostructures from a syntax of RNA structural modules. Nano Letters. PMID 29039189 DOI: 10.1021/Acs.Nanolett.7B03842 |
0.847 |
|
| 2017 |
Dabkowska AP, Michanek A, Jaeger L, Chworos A, Nylander T, Sparr E. Supported Fluid Lipid Bilayer as a Scaffold to Direct Assembly of RNA Nanostructures. Methods in Molecular Biology (Clifton, N.J.). 1632: 107-122. PMID 28730435 DOI: 10.1007/978-1-4939-7138-1_7 |
0.613 |
|
| 2015 |
Afonin KA, Schultz D, Jaeger L, Gwinn E, Shapiro BA. Silver nanoclusters for RNA nanotechnology: steps towards visualization and tracking of RNA nanoparticle assemblies. Methods in Molecular Biology (Clifton, N.J.). 1297: 59-66. PMID 25895995 DOI: 10.1007/978-1-4939-2562-9_4 |
0.569 |
|
| 2015 |
Dabkowska AP, Michanek A, Jaeger L, Rabe M, Chworos A, Höök F, Nylander T, Sparr E. Assembly of RNA nanostructures on supported lipid bilayers. Nanoscale. 7: 583-96. PMID 25417592 DOI: 10.1039/C4Nr05968A |
0.688 |
|
| 2015 |
Rogers TA, Andrews GE, Jaeger L, Grabow WW. Fluorescent monitoring of RNA assembly and processing using the split-spinach aptamer. Acs Synthetic Biology. 4: 162-6. PMID 24932527 DOI: 10.1021/Sb5000725 |
0.672 |
|
| 2015 |
Dabkowska AP, Michanek A, Jaeger L, Rabe M, Chworos A, Höök F, Nylander T, Sparr E. Assembly of RNA nanostructures on supported lipid bilayers Nanoscale. 7: 583-596. DOI: 10.1039/c4nr05968a |
0.516 |
|
| 2014 |
Afonin KA, Viard M, Koyfman AY, Martins AN, Kasprzak WK, Panigaj M, Desai R, Santhanam A, Grabow WW, Jaeger L, Heldman E, Reiser J, Chiu W, Freed EO, Shapiro BA. Multifunctional RNA nanoparticles. Nano Letters. 14: 5662-71. PMID 25267559 DOI: 10.1021/Nl502385K |
0.652 |
|
| 2014 |
Grabow WW, Jaeger L. RNA self-assembly and RNA nanotechnology. Accounts of Chemical Research. 47: 1871-80. PMID 24856178 DOI: 10.1021/Ar500076K |
0.747 |
|
| 2014 |
Afonin KA, Kasprzak W, Bindewald E, Puppala PS, Diehl AR, Hall KT, Kim TJ, Zimmermann MT, Jernigan RL, Jaeger L, Shapiro BA. Computational and experimental characterization of RNA cubic nanoscaffolds. Methods (San Diego, Calif.). 67: 256-65. PMID 24189588 DOI: 10.1016/J.Ymeth.2013.10.013 |
0.647 |
|
| 2014 |
Jaeger L. Structural Evolution of RNA Self-Assembly Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.182 |
0.702 |
|
| 2014 |
Zakrevsky P, Calkins ER, Jaeger L. Exploring the Genotype/Phenotype Landscape of Self-Assembling Modules in RNA Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.1648 |
0.37 |
|
| 2013 |
Grabow W, Jaeger L. RNA modularity for synthetic biology. F1000prime Reports. 5: 46. PMID 24273647 DOI: 10.12703/P5-46 |
0.645 |
|
| 2013 |
Afonin KA, Viard M, Martins AN, Lockett SJ, Maciag AE, Freed EO, Heldman E, Jaeger L, Blumenthal R, Shapiro BA. Activation of different split functionalities on re-association of RNA-DNA hybrids. Nature Nanotechnology. 8: 296-304. PMID 23542902 DOI: 10.1038/Nnano.2013.44 |
0.536 |
|
| 2013 |
Grabow WW, Zhuang Z, Shea JE, Jaeger L. The GA-minor submotif as a case study of RNA modularity, prediction, and design. Wiley Interdisciplinary Reviews. Rna. 4: 181-203. PMID 23378290 DOI: 10.1002/Wrna.1153 |
0.787 |
|
| 2012 |
Jaeger L, Calkins ER. Downward causation by information control in micro-organisms. Interface Focus. 2: 26-41. PMID 23386958 DOI: 10.1098/Rsfs.2011.0045 |
0.364 |
|
| 2012 |
Afonin KA, Kireeva M, Grabow WW, Kashlev M, Jaeger L, Shapiro BA. Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs. Nano Letters. 12: 5192-5. PMID 23016824 DOI: 10.1021/Nl302302E |
0.61 |
|
| 2012 |
Grabow WW, Zhuang Z, Swank ZN, Shea JE, Jaeger L. The right angle (RA) motif: a prevalent ribosomal RNA structural pattern found in group I introns. Journal of Molecular Biology. 424: 54-67. PMID 22999957 DOI: 10.1016/J.Jmb.2012.09.012 |
0.684 |
|
| 2012 |
Grabow WW, Jaeger L. siRNA delivery: Loaded-up microsponges. Nature Materials. 11: 268-9. PMID 22437781 DOI: 10.1038/Nmat3286 |
0.503 |
|
| 2012 |
Afonin KA, Lin YP, Calkins ER, Jaeger L. Attenuation of loop-receptor interactions with pseudoknot formation. Nucleic Acids Research. 40: 2168-80. PMID 22080507 DOI: 10.1093/Nar/Gkr926 |
0.481 |
|
| 2011 |
Afonin KA, Grabow WW, Walker FM, Bindewald E, Dobrovolskaia MA, Shapiro BA, Jaeger L. Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine. Nature Protocols. 6: 2022-34. PMID 22134126 DOI: 10.1038/Nprot.2011.418 |
0.566 |
|
| 2011 |
Bindewald E, Afonin K, Jaeger L, Shapiro BA. Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots. Acs Nano. 5: 9542-51. PMID 22067111 DOI: 10.1021/Nn202666W |
0.674 |
|
| 2011 |
Grabow WW, Zakrevsky P, Afonin KA, Chworos A, Shapiro BA, Jaeger L. Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes. Nano Letters. 11: 878-87. PMID 21229999 DOI: 10.1021/Nl104271S |
0.636 |
|
| 2011 |
Kasprzak W, Bindewald E, Kim TJ, Jaeger L, Shapiro BA. Use of RNA structure flexibility data in nanostructure modeling. Methods (San Diego, Calif.). 54: 239-50. PMID 21163354 DOI: 10.1016/J.Ymeth.2010.12.010 |
0.705 |
|
| 2011 |
Geary C, Chworos A, Jaeger L. Promoting RNA helical stacking via A-minor junctions Nucleic Acids Research. 39: 1066-1080. PMID 20876687 DOI: 10.1093/Nar/Gkq748 |
0.846 |
|
| 2011 |
Grabow WW, Zakrevsky P, Afonin KA, Chworos A, Shapiro BA, Jaeger L. Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes Nano Letters. 11: 878-887. DOI: 10.1021/nl104271s |
0.507 |
|
| 2010 |
Afonin KA, Bindewald E, Yaghoubian AJ, Voss N, Jacovetty E, Shapiro BA, Jaeger L. In vitro assembly of cubic RNA-based scaffolds designed in silico. Nature Nanotechnology. 5: 676-82. PMID 20802494 DOI: 10.1038/Nnano.2010.160 |
0.686 |
|
| 2010 |
Severcan I, Geary C, Chworos A, Voss N, Jacovetty E, Jaeger L. A polyhedron made of tRNAs Nature Chemistry. 2: 772-779. PMID 20729899 DOI: 10.1038/Nchem.733 |
0.811 |
|
| 2010 |
Afonin KA, Grabow W, Geary C, Severcan I, Chworos A, Yaghoubian AJ, Voss N, Jacovetty E, Bindewald E, Shapiro BA, Jaeger L. Conference paper: Complementary strategies for efficient design and synthesis of 3d self-assembling RNA nano-scaffolds 7th Annual Conference On Foundations of Nanoscience: Self-Assembled Architectures and Devices, Fnano 2010. |
0.793 |
|
| 2009 |
Jaeger L. Defining the syntax for self-assembling RNA tertiary architectures. Nucleic Acids Symposium Series (2004). 83-4. PMID 19749271 DOI: 10.1093/nass/nrp042 |
0.681 |
|
| 2009 |
Ishikawa J, Matsumura S, Jaeger L, Inoue T, Furuta H, Ikawa Y. Rational optimization of the DSL ligase ribozyme with GNRA/receptor interacting modules. Archives of Biochemistry and Biophysics. 490: 163-70. PMID 19728985 DOI: 10.1016/J.Abb.2009.08.020 |
0.517 |
|
| 2009 |
Severcan I, Geary C, Verzemnieks E, Chworos A, Jaeger L. Square-shaped RNA particles from different RNA folds Nano Letters. 9: 1270-1277. PMID 19239258 DOI: 10.1021/Nl900261H |
0.826 |
|
| 2009 |
Smitthipong W, Neumann T, Gajria S, Li Y, Chworos A, Jaeger L, Tirrell M. Noncovalent self-assembling nucleic acid-lipid based materials. Biomacromolecules. 10: 221-8. PMID 19099365 DOI: 10.1021/Bm800701A |
0.375 |
|
| 2009 |
Jaeger L, Verzemnieks EJ, Geary C. The UA_handle: a versatile submotif in stable RNA architectures. Nucleic Acids Research. 37: 215-30. PMID 19036788 DOI: 10.1093/Nar/Gkn911 |
0.819 |
|
| 2009 |
Severcan I, Geary C, Jaeger L, Bindewald E, Kasprzak W, Shapiro BA. Computational and Experimental RNA Nanoparticle Design Automation in Proteomics and Genomics: An Engineering Case-Based Approach. 193-220. DOI: 10.1002/9780470741191.ch8 |
0.781 |
|
| 2008 |
Geary C, Baudrey S, Jaeger L. Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors. Nucleic Acids Research. 36: 1138-52. PMID 18158305 DOI: 10.1093/Nar/Gkm1048 |
0.722 |
|
| 2008 |
Smitthipong W, Chworos A, Lin B, Neumann T, Gajria S, Jaeger L, Tirrell M. Self-assembled materials containing complementary nucleobase molecular recognition Materials Research Society Symposium Proceedings. 1094: 39-44. DOI: 10.1557/Proc-1094-Dd06-05 |
0.384 |
|
| 2008 |
Smitthipong W, Neumann T, Chworos A, Jaeger L, Tirrell M. Supramolecular materials comprising nucleic acid biopolymers Macromolecular Symposia. 264: 13-17. DOI: 10.1002/Masy.200850403 |
0.376 |
|
| 2007 |
Zhuang Z, Jaeger L, Shea JE. Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin. Nucleic Acids Research. 35: 6995-7002. PMID 17940098 DOI: 10.1093/Nar/Gkm719 |
0.652 |
|
| 2007 |
Geary C, Severcan I, Verzemieks E, Chworos A, Jaeger L. Sculpting addressable and responsive nano-architectures using a three-dimensional structure syntax of RNA 4th Conference On Foundations of Nanoscience: Self-Assembled Architectures and Devices, Fnano 2007. 49-51. |
0.806 |
|
| 2006 |
Jaeger L, Chworos A. The architectonics of programmable RNA and DNA nanostructures Current Opinion in Structural Biology. 16: 531-543. PMID 16843653 DOI: 10.1016/J.Sbi.2006.07.001 |
0.675 |
|
| 2006 |
Nasalean L, Baudrey S, Leontis NB, Jaeger L. Controlling RNA self-assembly to form filaments. Nucleic Acids Research. 34: 1381-92. PMID 16522648 DOI: 10.1093/Nar/Gkl008 |
0.687 |
|
| 2006 |
Bates AD, Callen BP, Cooper JM, Cosstick R, Geary C, Glidle A, Jaeger L, Pearson JL, Proupín-Pérez M, Xu C, Cumming DR. Construction and characterization of a gold nanoparticle wire assembled using Mg2+-dependent RNA-RNA interactions. Nano Letters. 6: 445-8. PMID 16522039 DOI: 10.1021/Nl052316G |
0.803 |
|
| 2006 |
Cumming DRS, Bates AD, Callen BP, Cooper JM, Cosstick R, Geary C, Glidle A, Jaeger L, Pearson JL, Proupín-Ṕrez M, Xu C. Gold nanoparticle wires made using RNA-based self-assembly Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 24: 3196-3199. DOI: 10.1116/1.2363404 |
0.786 |
|
| 2006 |
Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE. Corrigendum to "RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop-Receptor Complex" [J. Mol. Biol. 351 (2005) 371-382] (DOI:10.1016/j.jmb.2005.05.069) Journal of Molecular Biology. 360: 742. DOI: 10.1016/J.Jmb.2006.05.039 |
0.522 |
|
| 2005 |
Koyfman AY, Braun G, Magonov S, Chworos A, Reich NO, Jaeger L. Controlled spacing of cationic gold nanoparticles by nanocrown RNA. Journal of the American Chemical Society. 127: 11886-7. PMID 16117496 DOI: 10.1021/Ja051144M |
0.624 |
|
| 2005 |
Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE. RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex. Journal of Molecular Biology. 351: 371-82. PMID 16002091 DOI: 10.1016/J.Jmb.2005.05.069 |
0.602 |
|
| 2005 |
Jaeger L, Chworos A. From RNA tectonics to programmable jigsaw puzzles made of RNA 2nd Conference On Foundations of Nanoscience: Self-Assembled Architectures and Devices, Fnano 2005. 156-161. |
0.602 |
|
| 2004 |
Yoshioka W, Ikawa Y, Jaeger L, Inoue T. A ligase ribozyme obtained from a structured pool. Nucleic Acids Symposium Series (2004). 209-10. PMID 17150552 DOI: 10.1093/nass/48.1.209 |
0.553 |
|
| 2004 |
Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L. Building programmable jigsaw puzzles with RNA Science. 306: 2068-2072. PMID 15604402 DOI: 10.1126/Science.1104686 |
0.842 |
|
| 2004 |
Yoshioka W, Ikawa Y, Jaeger L, Shiraishi H, Inoue T. Generation of a catalytic module on a self-folding RNA. Rna (New York, N.Y.). 10: 1900-6. PMID 15525711 DOI: 10.1261/Rna.7170304 |
0.639 |
|
| 2004 |
Liu B, Baudrey S, Jaeger L, Bazan GC. Characterization of tectoRNA assembly with cationic conjugated polymers. Journal of the American Chemical Society. 126: 4076-7. PMID 15053575 DOI: 10.1021/Ja031552V |
0.573 |
|
| 2003 |
Hansma HG, Oroudjev E, Baudrey S, Jaeger L. TectoRNA and 'kissing-loop' RNA: Atomic force microscopy of self-assembling RNA structures Journal of Microscopy. 212: 273-279. PMID 14629553 DOI: 10.1111/J.1365-2818.2003.01276.X |
0.687 |
|
| 2001 |
Wagner C, Palacios I, Jaeger L, St Johnston D, Ehresmann B, Ehresmann C, Brunel C. Dimerization of the 3'UTR of bicoid mRNA involves a two-step mechanism. Journal of Molecular Biology. 313: 511-24. PMID 11676536 DOI: 10.1006/Jmbi.2001.5057 |
0.474 |
|
| 2001 |
Jaeger L, Westhof E, Leontis NB. TectoRNA: Modular assembly units for the construction of RNA nano-objects Nucleic Acids Research. 29: 455-463. PMID 11139616 DOI: 10.1093/Nar/29.2.455 |
0.667 |
|
| 2001 |
Jaeger L. The world of catalytic nucleic acids European Space Agency, (Special Publication) Esa Sp. 349-352. |
0.503 |
|
| 2000 |
Jaeger L, Leontis NB. Tecto-RNA: One-dimensional self-assembly through tertiary interactions Angewandte Chemie - International Edition. 39: 2521-2524. DOI: 10.1002/1521-3773(20000717)39:14<2521::Aid-Anie2521>3.0.Co;2-P |
0.713 |
|
| 2000 |
Jaeger L, Leontis N. Tekto-RNA: eindimensionale Selbstanordnung durch tertiäre Wechselwirkungen Angewandte Chemie. 112: 2576-2580. DOI: 10.1002/1521-3757(20000717)112:14<2576::Aid-Ange2576>3.0.Co;2-G |
0.664 |
|
| 1999 |
Jaeger L, Wright MC, Joyce GF. A complex ligase ribozyme evolved in vitro from a group I ribozyme domain. Proceedings of the National Academy of Sciences of the United States of America. 96: 14712-7. PMID 10611278 DOI: 10.1073/Pnas.96.26.14712 |
0.541 |
|
| 1998 |
Massire C, Jaeger L, Westhof E. Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis Journal of Molecular Biology. 279: 773-793. PMID 9642060 DOI: 10.1006/Jmbi.1998.1797 |
0.394 |
|
| 1998 |
Westhof E, Jaeger L, Lehnert V, Massire C, Michel F. The modular assembly of large rNAs: 3-D models of self-splicing introns and bacterial RNase P Faseb Journal. 12: A1315. |
0.521 |
|
| 1998 |
Westhof E, Masquida B, Jaeger L. RNA Tectonics and Modular Modeling of RNA Acs Symposium Series. 682: 346-358. |
0.587 |
|
| 1997 |
Jaeger L. The new world of ribozymes Current Opinion in Structural Biology. 7: 324-335. PMID 9204273 DOI: 10.1016/S0959-440X(97)80047-4 |
0.624 |
|
| 1997 |
Massire C, Jaeger L, Westhof E. Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs Rna (New York, N.Y.). 3: 553-556. PMID 9174090 |
0.464 |
|
| 1996 |
Westhof E, Masquida B, Jaeger L. RNA tectonics: Towards RNA design Folding and Design. 1: R78-R88. PMID 9079386 DOI: 10.1016/S1359-0278(96)00037-5 |
0.683 |
|
| 1996 |
Lehnert V, Jaeger L, Michel F, Westhof E. New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: A complete 3d model of the Tetrahymena thermophila ribozyme Chemistry and Biology. 3: 993-1009. PMID 9000010 DOI: 10.1016/S1074-5521(96)90166-0 |
0.564 |
|
| 1996 |
Jaeger L, Westhof E, Michel F. Function of a pseudoknot in the suppression of an alternative splicing event in a group I intron Biochimie. 78: 466-473. PMID 8915536 DOI: 10.1016/0300-9084(96)84753-5 |
0.386 |
|
| 1994 |
Jaeger L, Michel F, Westhof E. Involvement of a GNRA tetraloop in long-range RNA tertiary interactions Journal of Molecular Biology. 236: 1271-1276. PMID 7510342 DOI: 10.1016/0022-2836(94)90055-8 |
0.562 |
|
| 1992 |
Michel F, Jaeger L, Westhof E, Kuras R, Tihy F, Xu MQ, Shub DA. Activation of the catalytic core of a group I intron by a remote 3′ splice junction Genes and Development. 6: 1373-1385. PMID 1644285 DOI: 10.1101/Gad.6.8.1373 |
0.489 |
|
| 1992 |
Westhof E, Jaeger L. RNA pseudoknots Current Opinion in Structural Biology. 2: 327-333. DOI: 10.1016/0959-440X(92)90221-R |
0.586 |
|
| 1991 |
Jaeger L, Westhof E, Michel F. Function of P11, a tertiary base pairing in self-splicing introns of subgroup IA Journal of Molecular Biology. 221: 1153-1164. PMID 1942046 DOI: 10.1016/0022-2836(91)90925-V |
0.433 |
|
| Show low-probability matches. |