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Sasha F. Levy, Ph.D. - Publications

Affiliations: 
2005 University of California, Santa Barbara, Santa Barbara, CA, United States 
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Hale JJ, Matsui T, Goldstein I, Mullis MN, Roy KR, Ville CN, Miller D, Wang C, Reynolds T, Steinmetz LM, Levy SF, Ehrenreich IM. Genome-scale analysis of interactions between genetic perturbations and natural variation. Biorxiv : the Preprint Server For Biology. PMID 38293072 DOI: 10.1101/2023.05.06.539663  0.311
2023 Li W, Miller D, Liu X, Tosi L, Chkaiban L, Mei H, Hung PH, Parekkadan B, Sherlock G, Levy SF. Arrayed barcoding for multiplexed sequence verification of plasmid DNA and demultiplexing of pooled libraries. Biorxiv : the Preprint Server For Biology. PMID 37873145 DOI: 10.1101/2023.10.13.562064  0.525
2022 Aggeli D, Marad DA, Liu X, Buskirk SW, Levy SF, Lang GI. Overdominant and partially dominant mutations drive clonal adaptation in diploid Saccharomyces cerevisiae. Genetics. PMID 35435209 DOI: 10.1093/genetics/iyac061  0.753
2019 Nguyen Ba AN, Cvijović I, Rojas Echenique JI, Lawrence KR, Rego-Costa A, Liu X, Levy SF, Desai MM. High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast. Nature. PMID 31723263 DOI: 10.1038/S41586-019-1749-3  0.454
2019 Liu X, Liu Z, Dziulko AK, Li F, Miller D, Morabito RD, Francois D, Levy SF. iSeq 2.0: A Modular and Interchangeable Toolkit for Interaction Screening in Yeast. Cell Systems. PMID 30954477 DOI: 10.1016/J.Cels.2019.03.005  0.358
2019 Jaffe M, Dziulko A, Smith JD, St Onge RP, Levy SF, Sherlock G. Improved discovery of genetic interactions using CRISPRiSeq across multiple environments. Genome Research. PMID 30782640 DOI: 10.1101/Gr.246603.118  0.701
2018 Blundell JR, Schwartz K, Francois D, Fisher DS, Sherlock G, Levy SF. The dynamics of adaptive genetic diversity during the early stages of clonal evolution. Nature Ecology & Evolution. PMID 30598529 DOI: 10.1038/S41559-018-0758-1  0.671
2018 Lauer S, Avecilla G, Spealman P, Sethia G, Brandt N, Levy SF, Gresham D. Single-cell copy number variant detection reveals the dynamics and diversity of adaptation. Plos Biology. 16: e3000069. PMID 30562346 DOI: 10.1371/Journal.Pbio.3000069  0.436
2018 Li F, Salit ML, Levy SF. Unbiased Fitness Estimation of Pooled Barcode or Amplicon Sequencing Studies. Cell Systems. PMID 30391162 DOI: 10.1016/J.Cels.2018.09.004  0.342
2017 Schlecht U, Liu Z, Blundell JR, St Onge RP, Levy SF. A scalable double-barcode sequencing platform for characterization of dynamic protein-protein interactions. Nature Communications. 8: 15586. PMID 28541284 DOI: 10.1038/Ncomms15586  0.351
2017 Smith JD, Schlecht U, Xu W, Suresh S, Horecka J, Proctor MJ, Aiyar RS, Bennett RA, Chu A, Li YF, Roy K, Davis RW, Steinmetz LM, Hyman RW, Levy SF, et al. A method for high-throughput production of sequence-verified DNA libraries and strain collections. Molecular Systems Biology. 13: 913. PMID 28193641 DOI: 10.15252/Msb.20167233  0.349
2016 Jaffe M, Sherlock G, Levy SF. iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast. G3 (Bethesda, Md.). PMID 27821633 DOI: 10.1534/G3.116.034207  0.704
2016 Venkataram S, Dunn B, Li Y, Agarwala A, Chang J, Ebel ER, Geiler-Samerotte K, Hérissant L, Blundell JR, Levy SF, Fisher DS, Sherlock G, Petrov DA. Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast. Cell. PMID 27594428 DOI: 10.1016/J.Cell.2016.08.002  0.692
2016 Levy SF. Cellular Heterogeneity: Benefits Besides Bet-Hedging. Current Biology : Cb. 26: R355-7. PMID 27166691 DOI: 10.1016/J.Cub.2016.03.034  0.341
2015 Levy SF, Blundell JR, Venkataram S, Petrov DA, Fisher DS, Sherlock G. Quantitative evolutionary dynamics using high-resolution lineage tracking. Nature. 519: 181-6. PMID 25731169 DOI: 10.1038/Nature14279  0.653
2014 Blundell JR, Levy SF. Beyond genome sequencing: lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer. Genomics. 104: 417-30. PMID 25260907 DOI: 10.1016/J.Ygeno.2014.09.005  0.432
2013 Richardson JB, Uppendahl LD, Traficante MK, Levy SF, Siegal ML. Histone variant HTZ1 shows extensive epistasis with, but does not increase robustness to, new mutations. Plos Genetics. 9: e1003733. PMID 23990806 DOI: 10.1371/Journal.Pgen.1003733  0.481
2012 Levy SF, Siegal ML. The robustness continuum. Advances in Experimental Medicine and Biology. 751: 431-52. PMID 22821470 DOI: 10.1007/978-1-4614-3567-9_20  0.376
2012 Fraser HB, Levy S, Chavan A, Shah HB, Perez JC, Zhou Y, Siegal ML, Sinha H. Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity. Genome Research. 22: 1930-9. PMID 22645260 DOI: 10.1101/Gr.134080.111  0.442
2012 Levy SF, Ziv N, Siegal ML. Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant. Plos Biology. 10: e1001325. PMID 22589700 DOI: 10.1371/Journal.Pbio.1001325  0.345
2008 Levy SF, Siegal ML. Network hubs buffer environmental variation in Saccharomyces cerevisiae. Plos Biology. 6: e264. PMID 18986213 DOI: 10.1371/Journal.Pbio.0060264  0.463
2008 LeBoeuf AC, Levy SF, Gaylord M, Bhattacharya A, Singh AK, Jordan MA, Wilson L, Feinstein SC. FTDP-17 mutations in Tau alter the regulation of microtubule dynamics: an "alternative core" model for normal and pathological Tau action. The Journal of Biological Chemistry. 283: 36406-15. PMID 18940799 DOI: 10.1074/Jbc.M803519200  0.582
2008 Bhattacharya A, Levy S, LeBoeuf A, Gaylord M, Wilson L, Singh AK, Feinstein SC. A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics. Bmc Bioinformatics. 9: 339. PMID 18700022 DOI: 10.1186/1471-2105-9-339  0.542
2005 Levy SF, Leboeuf AC, Massie MR, Jordan MA, Wilson L, Feinstein SC. Three- and four-repeat tau regulate the dynamic instability of two distinct microtubule subpopulations in qualitatively different manners. Implications for neurodegeneration. The Journal of Biological Chemistry. 280: 13520-8. PMID 15671021 DOI: 10.1074/Jbc.M413490200  0.524
2004 Feinstein S, Bunker J, Levy S, LeBoeuf A, Massie M, Panda D, Jordan MA, Wilson L. P3-274 Tau, microtubule dynamics and neuronal cell death in tauopathies Neurobiology of Aging. 25: S432. DOI: 10.1016/S0197-4580(04)81424-6  0.683
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