David I. Hirsh - Related publications

Affiliations: 
1971-1985 University of Colorado, Boulder, Boulder, CO, United States 
 1985- Columbia University, New York, NY 
Area:
nucleic acid structure and function and gene activity during early development of C. elegans
Website:
https://www.simonsfoundation.org/team/david-i-hirsh/
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Skarp S, Xia JH, Zhang Q, Löija M, Costantini A, Ruddock LW, Mäkitie O, Wei GH, Männikkö M. Exome sequencing reveals a phenotype modifying variant in ZNF528 in primary osteoporosis with a COL1A2 deletion. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 32722848 DOI: 10.1002/jbmr.4145   
2020 Teramura Y, Tanaka M, Yamazaki Y, Yamashita K, Takazawa Y, Ae K, Matsumoto S, Nakayama T, Kaneko T, Musha Y, Nakamura T. Identification of Novel Fusion Genes in Bone and Soft Tissue Sarcoma and Their Implication in the Generation of a Mouse Model. Cancers. 12. PMID 32825119 DOI: 10.3390/cancers12092345   
2020 Hodgens C, Chang N, Schaller GE, Kieber JJ. Mutagenomics: A rapid, high-throughput method to identify causative mutations from a genetic screen. Plant Physiology. PMID 32887734 DOI: 10.1104/pp.20.00609   
2020 Crosby FL, Munderloh UG, Nelson CM, Herron MJ, Lundgren AM, Xiao YP, Allred DR, Barbet AF. Disruption of VirB6 paralogs in attenuates its growth. Journal of Bacteriology. PMID 32928930 DOI: 10.1128/JB.00301-20   
2020 Liu Z, Zheng L, Pu L, Ma X, Wang X, Wu Y, Ming H, Wang Q, Zhang G. Affects the Seed Size and Weight by Adjusting Cytokinin Content and Forming ENO2-bZIP75 Complex in . Frontiers in Plant Science. 11: 574316. PMID 32983222 DOI: 10.3389/fpls.2020.574316   
2020 Sang L, Yu Z, Wang A, Li H, Dai X, Sun L, Liu H, Yuan Y. Identification of methylated-differentially expressed genes and pathways in esophageal squamous cell carcinoma. Pathology, Research and Practice. 216: 153050. PMID 32825936 DOI: 10.1016/j.prp.2020.153050   
2020 Chen CC, Wong TY, Chin TY, Lee WH, Kuo CY, Hsu YC. Systems biology approach to exploring the effect of cyclic stretching on cardiac cell physiology. Aging. 12. PMID 32759460 DOI: 10.18632/aging.103465   
2020 Gan Z, Cheng J, Xia L, Kwok KW, Lu Y, Nie P. Unique duplication of IFNh genes in Nile tilapia (Oreochromis niloticus) reveals lineage-specific evolution of IFNh in perciform fishes. Fish & Shellfish Immunology. PMID 32941975 DOI: 10.1016/j.fsi.2020.09.018   
2020 Li J, Lu M, Zhang P, Hou E, Li T, Liu X, Xu X, Wang Z, Fan Y, Zhen X, Li R, Liu P, Yu Y, Hang J, Qiao J. Aberrant spliceosome expression and altered alternative splicing events correlate with maturation deficiency in human oocytes. Cell Cycle (Georgetown, Tex.). 1-13. PMID 32779509 DOI: 10.1080/15384101.2020.1799295   
2020 Yang J, McGovern A, Martin P, Duffus K, Ge X, Zarrineh P, Morris AP, Adamson A, Fraser P, Rattray M, Eyre S. Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis. Nature Communications. 11: 4402. PMID 32879318 DOI: 10.1038/s41467-020-18180-7   
2020 Orr RG, Foley SJ, Sherman CA, Abreu I, Galotto G, Liu B, Gonzalez-Guerrero M, Vidali L. Robust survival-based RNAi of gene families using in tandem silencing of adenine phosphoribosyltransferase. Plant Physiology. PMID 32764132 DOI: 10.1104/pp.20.00865   
2020 Li Q, Meng L, Liu D. Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology. Frontiers in Genetics. 11: 782. PMID 32849793 DOI: 10.3389/fgene.2020.00782   
2020 Ali Hosseini Rad SM, Poudel A, Tan GMY, McLellan AD. Optimisation of Tet-On inducible systems for Sleeping Beauty-based chimeric antigen receptor (CAR) applications. Scientific Reports. 10: 13125. PMID 32753634 DOI: 10.1038/s41598-020-70022-0   
2020 Wang X, Zhao L, Man Y, Li X, Wang L, Xiao J. PDM4, a Pentatricopeptide Repeat Protein, Affects Chloroplast Gene Expression and Chloroplast Development in . Frontiers in Plant Science. 11: 1198. PMID 32849743 DOI: 10.3389/fpls.2020.01198   
2020 Tripathi RK, Aguirre JA, Singh J. Genome-wide analysis of wall associated kinase (WAK) gene family in barley. Genomics. PMID 32987151 DOI: 10.1016/j.ygeno.2020.09.045   
2020 Lee J, Suh Y, Jeong H, Kim GH, Byeon SH, Han J, Lim HT. Aberrant expression of PAX6 gene associated with classical aniridia: identification and functional characterization of novel noncoding mutations. Journal of Human Genetics. PMID 32920601 DOI: 10.1038/s10038-020-00829-2   
2020 Soutourina O, Dubois T, Monot M, Shelyakin PV, Saujet L, Boudry P, Gelfand MS, Dupuy B, Martin-Verstraete I. Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen . Frontiers in Microbiology. 11: 1939. PMID 32903654 DOI: 10.3389/fmicb.2020.01939   
2020 Rajaram K, Liu HB, Prigge ST. Redesigned TetR-Aptamer System To Control Gene Expression in Plasmodium falciparum. Msphere. 5. PMID 32817449 DOI: 10.1128/mSphere.00457-20   
2020 Ichino N, Serres MR, Urban RM, Urban MD, Treichel AJ, Schaefbauer KJ, Greif LE, Varshney GK, Skuster KJ, McNulty MS, Daby CL, Wang Y, Liao HK, El-Rass S, Ding Y, et al. Building the vertebrate codex using the gene breaking protein trap library. Elife. 9. PMID 32779569 DOI: 10.7554/eLife.54572   
2020 Zhao X, Cheng Y, Wu C, Ren W, Rao F, Zhou Q, Cui G, Qi X, Hong W. [A temperature-inducible Targetron system for efficient gene inactivation in Escherichia coli]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 36: 1659-1671. PMID 32924364 DOI: 10.13345/j.cjb.190547   
2020 Zhang T, Tan M, Geng L, Li J, Xiang Y, Zhang B, Zhao Y. New insight into comprehensive analysis of INDETERMINATE DOMAIN (IDD) gene family in rice. Plant Physiology and Biochemistry : Ppb. 154: 547-556. PMID 32912488 DOI: 10.1016/j.plaphy.2020.06.032   
2020 Bush SJ, McCulloch MEB, Lisowski ZM, Muriuki C, Clark EL, Young R, Pridans C, Prendergast JGD, Summers KM, Hume DA. Species-Specificity of Transcriptional Regulation and the Response to Lipopolysaccharide in Mammalian Macrophages. Frontiers in Cell and Developmental Biology. 8: 661. PMID 32793601 DOI: 10.3389/fcell.2020.00661   
2020 Zhou XT, Jia LD, Duan MZ, Chen X, Qiao CL, Ma JQ, Zhang C, Jing FY, Zhang SS, Yang B, Zhang LY, Li JN. Genome-wide identification and expression profiling of the carotenoid cleavage dioxygenase (CCD) gene family in Brassica napus L. Plos One. 15: e0238179. PMID 32881902 DOI: 10.1371/journal.pone.0238179   
2020 Durnaoglu S, Kim HS, Ahnn J, Lee SK. Human Endogenous Retrovirus K (HERV-K) can drive gene expression as a promoter in Caenorhabditis elegans. Bmb Reports. PMID 32867919   
2020 Durnaoglu S, Kim HS, Ahnn J, Lee SK. Human Endogenous Retrovirus K (HERV-K) can drive gene expression as a promoter in Caenorhabditis elegans. Bmb Reports. PMID 32867919   
2020 Barter MJ, Cheung K, Falk J, Panagiotopoulos AC, Cosimini C, O'Brien S, Teja-Putri K, Neill G, Deehan DJ, Young DA. Dynamic chromatin accessibility landscape changes following interleukin-1 stimulation. Epigenetics. 1-14. PMID 32741307 DOI: 10.1080/15592294.2020.1789266   
2020 Meng J, Yang J, Peng M, Liu X, He H. Genome-Wide Characterization, Evolution, and Expression Analysis of the Leucine-Rich Repeat Receptor-Like Protein Kinase (LRR-RLK) Gene Family in . Life (Basel, Switzerland). 10. PMID 32899802 DOI: 10.3390/life10090176   
2020 Cui DL, Meng JY, Ren XY, Yue JJ, Fu HY, Huang MT, Zhang QQ, Gao SJ. Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum. Scientific Reports. 10: 13202. PMID 32764599 DOI: 10.1038/s41598-020-70061-7   
2020 Houseright RA, Rosowski EE, Lam PY, Tauzin SJM, Mulvaney O, Dewey CN, Huttenlocher A. Cell type specific gene expression profiling reveals a role for complement component C3 in neutrophil responses to tissue damage. Scientific Reports. 10: 15716. PMID 32973200 DOI: 10.1038/s41598-020-72750-9   
2020 Cao J, Cheng X. Characterization and molecular evolution of claudin genes in the Pungitius sinensis. Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology. PMID 32778926 DOI: 10.1007/s00360-020-01301-5   
2020 Cao J, Cheng X. Characterization and molecular evolution of claudin genes in the Pungitius sinensis. Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology. PMID 32778926 DOI: 10.1007/s00360-020-01301-5   
2020 Qi S, Chen S, Li W, Xu X, Zhong M, Lin J, Yu Y, Chen Y, Li H. Alternative splicing and duplication of PI-like genes in maize. Gene. 145064. PMID 32891770 DOI: 10.1016/j.gene.2020.145064   
2020 Yan Z, Shen Z, Li Z, Chao Q, Kong L, Gao ZF, Li QW, Zheng HY, Zhao CF, Lu CM, Wang YW, Wang BC. Genome-wide transcriptome and proteome profiles indicate an active role of alternative splicing during de-etiolation of maize seedlings. Planta. 252: 60. PMID 32964359 DOI: 10.1007/s00425-020-03464-5   
2020 Ko CC, Hatfull GF. Identification of mycobacteriophage toxic genes reveals new features of mycobacterial physiology and morphology. Scientific Reports. 10: 14670. PMID 32887931 DOI: 10.1038/s41598-020-71588-5   
2020 Tripathi RK, Overbeek W, Singh J. Global analysis of SBP gene family in Brachypodium distachyon reveals its association with spike development. Scientific Reports. 10: 15032. PMID 32929136 DOI: 10.1038/s41598-020-72005-7   
2020 Ge L, Kang J, Dong X, Luan D, Su G, Li G, Zhang Y, Quan F. Myostatin site-directed mutation and simultaneous PPARγ site-directed knockin in bovine genome. Journal of Cellular Physiology. PMID 32841375 DOI: 10.1002/jcp.30017   
2020 Ge L, Kang J, Dong X, Luan D, Su G, Li G, Zhang Y, Quan F. Myostatin site-directed mutation and simultaneous PPARγ site-directed knockin in bovine genome. Journal of Cellular Physiology. PMID 32841375 DOI: 10.1002/jcp.30017   
2020 Lu B, Wang Y, Zhang G, Feng Y, Yan Z, Wu J, Chen X. Genome-Wide Identification and Expression Analysis of the Strawberry Gene Family and the Role of Key Gene in Fruit Resistance to Gray Mold. Plants (Basel, Switzerland). 9. PMID 32937812 DOI: 10.3390/plants9091199   
2020 Jung YJ, Kim DH, Lee HJ, Nam KH, Bae S, Nou IS, Cho YG, Kim MK, Kang KK. Knockout of Gene ( Encoding bHLH Transcription Factor Using CRISPR/Cas9 System Confers Male Sterility Phenotype in Tomato. Plants (Basel, Switzerland). 9. PMID 32933074 DOI: 10.3390/plants9091189   
2020 van Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Dos Santos Lopes A, van Lieshout N, Myers CL, et al. Systematic analysis of bypass suppression of essential genes. Molecular Systems Biology. 16: e9828. PMID 32939983 DOI: 10.15252/msb.20209828   
2020 Sun X, Zhang K, Gu J, Yang J, Huang Q, Yan R, Qin S, Hou C, Zhang G, Wang S, Li M. The biological characters of Bmelav-like genes in the development of Bombyx mori. Insect Molecular Biology. PMID 32940384 DOI: 10.1111/imb.12668   
2020 Li M, Xie F, Li Y, Gong L, Luo Y, Zhang Y, Chen Q, Wang Y, Lin Y, Zhang Y, Wang X, Tang H. Genome-Wide Analysis of the Heat Shock Transcription Factor Gene Family in : Structure, Evolution, and Expression Profiles. Dna and Cell Biology. PMID 32945687 DOI: 10.1089/dna.2020.5922   
2020 Ma X, Su B, Tian Y, Backenstose NJC, Ye Z, Moss A, Duong TY, Wang X, Dunham RA. Deep Transcriptomic Analysis Reveals the Dynamic Developmental Progression during Early Development of Channel Catfish (). International Journal of Molecular Sciences. 21. PMID 32748829 DOI: 10.3390/ijms21155535   
2020 Wu M, Wang P, Gao M, Shen D, Zhao Q. Transcriptome analysis of the eggs of the silkworm pale red egg (rep-1) mutant at 36 hours after oviposition. Plos One. 15: e0237242. PMID 32764803 DOI: 10.1371/journal.pone.0237242   
2020 Hou H, Lv L, Huo H, Dai H, Zhang Y. Genome-Wide Identification of the ABA Receptors Genes and Their Response to Abiotic Stress in Apple. Plants (Basel, Switzerland). 9. PMID 32823728 DOI: 10.3390/plants9081028   
2020 Liu J, Chanumolu SK, White KM, Albahrani M, Otu HH, Nawshad A. Transcriptional analysis of cleft palate in TGFβ3 mutant mice. Scientific Reports. 10: 14940. PMID 32913205 DOI: 10.1038/s41598-020-71636-0   
2020 Lin A, Ma J, Xu F, Xu W, Jiang H, Zhang H, Qu C, Wei L, Li J. Differences in Alternative Splicing between Yellow and Black-Seeded Rapeseed. Plants (Basel, Switzerland). 9. PMID 32752101 DOI: 10.3390/plants9080977   
2020 Singh R, Sophiarani Y. A report on DNA sequence determinants in gene expression. Bioinformation. 16: 422-431. PMID 32831525 DOI: 10.6026/97320630016422   
2020 Liu J, Sun Z, Wang Z, Peng Y. A Comparative Transcriptomics Approach to Analyzing the Differences in Cold Resistance in between Guangdong and Hunan. Journal of Immunology Research. 2020: 8025140. PMID 32832573 DOI: 10.1155/2020/8025140   
2020 Sato DX, Rafati N, Ring H, Younis S, Feng C, Blanco-Aguiar JA, Rubin CJ, Villafurte R, Hallböök F, Carneiro M, Andersson L. Brain transcriptomics of wild and domestic rabbits suggests that changes in dopamine signalling and ciliary function contributed to evolution of tameness. Genome Biology and Evolution. PMID 32835359 DOI: 10.1093/gbe/evaa158