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Joseph E. Lucas, Ph.D. - Publications

Affiliations: 
2006 Duke University, Durham, NC 
Area:
Bioinformatics, Statistics
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Murphy SK, Itchon-Ramos N, Visco Z, Huang Z, Grenier C, Schrott R, Acharya K, Boudreau MH, Price TM, Raburn DJ, Corcoran DL, Lucas JE, Mitchell JT, McClernon FJ, Cauley M, et al. Cannabinoid exposure and altered DNA methylation in rat and human sperm. Epigenetics. PMID 30521419 DOI: 10.1080/15592294.2018.1554521  0.31
2017 Lucas JE, Bazemore TC, Alo C, Monahan PB, Voora D. An electronic health record based model predicts statin adherence, LDL cholesterol, and cardiovascular disease in the United States Military Health System. Plos One. 12: e0187809. PMID 29155848 DOI: 10.1371/Journal.Pone.0187809  0.314
2015 Rose JJ, Voora D, Cyr DD, Lucas JE, Zaas AK, Woods CW, Newby LK, Kraus WE, Ginsburg GS. Gene Expression Profiles Link Respiratory Viral Infection, Platelet Response to Aspirin, and Acute Myocardial Infarction. Plos One. 10: e0132259. PMID 26193668 DOI: 10.1371/Journal.Pone.0132259  0.31
2015 Mayrink VD, Lucas JE. Bayesian factor models for the detection of coherent patterns in gene expression data Brazilian Journal of Probability and Statistics. 29: 1-33. DOI: 10.1214/13-Bjps226  0.709
2014 Benjamin AM, Nichols M, Burke TW, Ginsburg GS, Lucas JE. Comparing reference-based RNA-Seq mapping methods for non-human primate data. Bmc Genomics. 15: 570. PMID 25001289 DOI: 10.1186/1471-2164-15-570  0.329
2014 Zheng L, Yan X, Suchindran S, Dressman H, Chute JP, Lucas J. Biological pathway selection through Bayesian integrative modeling. Statistical Applications in Genetics and Molecular Biology. 13: 435-57. PMID 24937506 DOI: 10.1515/Sagmb-2013-0043  0.311
2014 Ray P, Zheng L, Lucas J, Carin L. Bayesian joint analysis of heterogeneous genomics data. Bioinformatics (Oxford, England). 30: 1370-6. PMID 24489367 DOI: 10.1093/Bioinformatics/Btu064  0.444
2013 Murray JS, Dunson DB, Carin L, Lucas JE. Bayesian Gaussian Copula Factor Models for Mixed Data. Journal of the American Statistical Association. 108: 656-665. PMID 23990691 DOI: 10.1080/01621459.2012.762328  0.354
2013 Friedman DR, Lucas JE, Weinberg JB. Clinical and biological relevance of genomic heterogeneity in chronic lymphocytic leukemia. Plos One. 8: e57356. PMID 23468975 DOI: 10.1371/Journal.Pone.0057356  0.316
2013 Henao R, Thompson JW, Moseley MA, Ginsburg GS, Carin L, Lucas JE. Latent protein trees Annals of Applied Statistics. 7: 691-713. DOI: 10.1214/13-Aoas639  0.355
2013 Mayrink VD, Lucas JE. Sparse latent factor models with interactions: Analysis of gene expression data Annals of Applied Statistics. 7: 799-822. DOI: 10.1214/12-Aoas607  0.7
2013 Uronis JM, VanDeusen JB, Datto MB, Lucas J, Morse M, Mantyh C, Lyerly HK, Clary BM, Hsu SD. A molecular profile of colorectal cancer to guide prognosis and therapy after resection of primary or metastatic disease. Journal of Clinical Oncology. 31: 339-339. DOI: 10.1200/Jco.2013.31.4_Suppl.339  0.353
2012 Lucas JE, Thompson JW, Dubois LG, McCarthy J, Tillmann H, Thompson A, Shire N, Hendrickson R, Dieguez F, Goldman P, Schwarz K, Patel K, McHutchison J, Moseley MA. Metaprotein expression modeling for label-free quantitative proteomics. Bmc Bioinformatics. 13: 74. PMID 22559859 DOI: 10.1186/1471-2105-13-74  0.326
2012 Tang X, Lucas JE, Chen JL, LaMonte G, Wu J, Wang MC, Koumenis C, Chi JT. Functional interaction between responses to lactic acidosis and hypoxia regulates genomic transcriptional outputs. Cancer Research. 72: 491-502. PMID 22135092 DOI: 10.1158/0008-5472.Can-11-2076  0.353
2012 Gatza ML, Kim SY, Reeves J, Lucas JE, Nevins JR. Abstract 5123: An integrated genomics approach to identify novel drivers of oncogenic pathway activity in human cancer Cancer Research. 72: 5123-5123. DOI: 10.1158/1538-7445.Am2012-5123  0.359
2011 Chang JT, Gatza ML, Lucas JE, Barry WT, Vaughn P, Nevins JR. SIGNATURE: a workbench for gene expression signature analysis. Bmc Bioinformatics. 12: 443. PMID 22078435 DOI: 10.1186/1471-2105-12-443  0.408
2011 Patel K, Lucas JE, Thompson JW, Dubois LG, Tillmann HL, Thompson AJ, Uzarski D, Califf RM, Moseley MA, Ginsburg GS, McHutchison JG, McCarthy JJ. High predictive accuracy of an unbiased proteomic profile for sustained virologic response in chronic hepatitis C patients. Hepatology (Baltimore, Md.). 53: 1809-18. PMID 21381069 DOI: 10.1002/Hep.24284  0.303
2010 Chen B, Chen M, Paisley J, Zaas A, Woods C, Ginsburg GS, Hero A, Lucas J, Dunson D, Carin L. Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies. Bmc Bioinformatics. 11: 552. PMID 21062443 DOI: 10.1186/1471-2105-11-552  0.306
2010 Lucas JE, Kung HN, Chi JT. Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers. Plos Computational Biology. 6: e1000920. PMID 20824128 DOI: 10.1371/Journal.Pcbi.1000920  0.469
2010 Gatza ML, Lucas JE, Barry WT, Kim JW, Wang Q, Crawford MD, Datto MB, Kelley M, Mathey-Prevot B, Potti A, Nevins JR. A pathway-based classification of human breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 107: 6994-9. PMID 20335537 DOI: 10.1073/Pnas.0912708107  0.43
2010 Du L, Chen M, Lucas J, Carin L. Sticky hidden Markov modeling of comparative genomic hybridization Ieee Transactions On Signal Processing. 58: 5353-5368. DOI: 10.1109/Tsp.2010.2053033  0.431
2009 Chang JT, Carvalho C, Mori S, Bild AH, Gatza ML, Wang Q, Lucas JE, Potti A, Febbo PG, West M, Nevins JR. A genomic strategy to elucidate modules of oncogenic pathway signaling networks. Molecular Cell. 34: 104-14. PMID 19362539 DOI: 10.1016/J.Molcel.2009.02.030  0.625
2009 Lucas JE, Carvalho CM, Chen JL, Chi JT, West M. Cross-study projections of genomic biomarkers: an evaluation in cancer genomics. Plos One. 4: e4523. PMID 19225561 DOI: 10.1371/Journal.Pone.0004523  0.68
2009 Lucas J, Carvalho C, West M. A bayesian analysis strategy for cross-study translation of gene expression biomarkers. Statistical Applications in Genetics and Molecular Biology. 8: Article 11. PMID 19222378 DOI: 10.2202/1544-6115.1436  0.681
2008 Carvalho CM, Chang J, Lucas JE, Nevins JR, Wang Q, West M. High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics. Journal of the American Statistical Association. 103: 1438-1456. PMID 21218139 DOI: 10.1198/016214508000000869  0.679
2008 Chen JL, Lucas JE, Schroeder T, Mori S, Wu J, Nevins J, Dewhirst M, West M, Chi JT. The genomic analysis of lactic acidosis and acidosis response in human cancers. Plos Genetics. 4: e1000293. PMID 19057672 DOI: 10.1371/Journal.Pgen.1000293  0.566
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