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Namhee Kim, Ph.D. - Publications

Affiliations: 
2009 Program in Computational Biology New York University, New York, NY, United States 
Area:
Bioinformatics, Biochemistry
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Han MS, Seong MW, Kim N, Shin S, Cho SI, Park H, Kim TS, Park SS, Choi EH. Viral RNA Load in Mildly Symptomatic and Asymptomatic Children with COVID-19, Seoul. Emerging Infectious Diseases. 26. PMID 32497001 DOI: 10.3201/eid2610.202449  0.44
2020 Han MS, Seong MW, Heo EY, Park JH, Kim N, Shin S, Cho SI, Park SS, Choi EH. Sequential analysis of viral load in a neonate and her mother infected with SARS-CoV-2. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32297925 DOI: 10.1093/cid/ciaa447  0.325
2017 Bayrak CS, Kim N, Schlick T. Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction. Nucleic Acids Research. PMID 28158755 DOI: 10.1093/Nar/Gkx045  0.719
2016 Hua L, Song Y, Kim N, Laing C, Wang JT, Schlick T. CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking. Plos One. 11: e0147097. PMID 26789998 DOI: 10.1371/Journal.Pone.0147097  0.752
2015 Baba N, Elmetwaly S, Kim N, Schlick T. Predicting Large RNA-Like Topologies by a Knowledge-Based Clustering Approach. Journal of Molecular Biology. PMID 26478223 DOI: 10.1016/J.Jmb.2015.10.009  0.804
2015 Kim N, Zahran M, Schlick T. Computational prediction of riboswitch tertiary structures including pseudoknots by RAGTOP: a hierarchical graph sampling approach. Methods in Enzymology. 553: 115-35. PMID 25726463 DOI: 10.1016/Bs.Mie.2014.10.054  0.766
2014 Kim N, Zheng Z, Elmetwaly S, Schlick T. RNA graph partitioning for the discovery of RNA modularity: a novel application of graph partition algorithm to biology. Plos One. 9: e106074. PMID 25188578 DOI: 10.1371/Journal.Pone.0106074  0.758
2014 Kim N, Laing C, Elmetwaly S, Jung S, Curuksu J, Schlick T. Graph-based sampling for approximating global helical topologies of RNA. Proceedings of the National Academy of Sciences of the United States of America. 111: 4079-84. PMID 24591615 DOI: 10.1073/Pnas.1318893111  0.766
2013 Kim N, Petingi L, Schlick T. Network Theory Tools for RNA Modeling. Wseas Transactions On Mathematics. 9: 941-955. PMID 25414570  0.782
2013 Laing C, Jung S, Kim N, Elmetwaly S, Zahran M, Schlick T. Predicting helical topologies in RNA junctions as tree graphs. Plos One. 8: e71947. PMID 23991010 DOI: 10.1371/Journal.Pone.0071947  0.778
2012 Kim N, Schlick T. A new toolkit for modeling RNA from a pseudo-torsional space: commentary on "discrete RNA libraries from pseudo-torsional space" by Humphris-Narayanan and Pyle (J. Mol. Biol. March 2012). Journal of Molecular Biology. 421: 1-5. PMID 22634179 DOI: 10.1016/J.Jmb.2012.05.027  0.691
2011 Izzo JA, Kim N, Elmetwaly S, Schlick T. RAG: an update to the RNA-As-Graphs resource. Bmc Bioinformatics. 12: 219. PMID 21627789 DOI: 10.1186/1471-2105-12-219  0.789
2010 Kim N, Izzo JA, Elmetwaly S, Gan HH, Schlick T. Computational generation and screening of RNA motifs in large nucleotide sequence pools. Nucleic Acids Research. 38: e139. PMID 20448026 DOI: 10.1093/Nar/Gkq282  0.679
2009 Quarta G, Kim N, Izzo JA, Schlick T. Analysis of riboswitch structure and function by an energy landscape framework. Journal of Molecular Biology. 393: 993-1003. PMID 19733179 DOI: 10.1016/J.Jmb.2009.08.062  0.615
2007 Kim N, Shin JS, Elmetwaly S, Gan HH, Schlick T. RagPools: RNA-As-Graph-Pools--a web server for assisting the design of structured RNA pools for in vitro selection. Bioinformatics (Oxford, England). 23: 2959-60. PMID 17855416 DOI: 10.1093/Bioinformatics/Btm439  0.757
2007 Kim N, Gan HH, Schlick T. A computational proposal for designing structured RNA pools for in vitro selection of RNAs. Rna (New York, N.Y.). 13: 478-92. PMID 17322501 DOI: 10.1261/Rna.374907  0.73
2004 Kim N, Shiffeldrim N, Gan HH, Schlick T. Candidates for novel RNA topologies. Journal of Molecular Biology. 341: 1129-44. PMID 15321711 DOI: 10.1016/J.Jmb.2004.06.054  0.791
2004 Fera D, Kim N, Shiffeldrim N, Zorn J, Laserson U, Gan HH, Schlick T. RAG: RNA-As-Graphs web resource. Bmc Bioinformatics. 5: 88. PMID 15238163 DOI: 10.1186/1471-2105-5-88  0.8
2004 Gan HH, Fera D, Zorn J, Shiffeldrim N, Tang M, Laserson U, Kim N, Schlick T. RAG: RNA-As-Graphs database--concepts, analysis, and features. Bioinformatics (Oxford, England). 20: 1285-91. PMID 14962931 DOI: 10.1093/Bioinformatics/Bth084  0.803
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