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Masoumeh Sikaroodi, Ph.D. - Publications

Affiliations: 
2013 Biosciences George Mason University, Washington, DC 
Area:
Bioinformatics, Environmental Sciences, Parasitology
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171 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bajaj JS, Fagan A, Gavis EA, Mousel T, Gallagher ML, Puri P, Fuchs M, Davis BC, Hylemon PB, Zhou H, Ahluwalia V, Cadrain R, Sikaroodi M, Gillevet PM. The RIVET RCT: Rifamycin SV MMX improves muscle mass, physical function, and ammonia in cirrhosis and minimal encephalopathy. Hepatology Communications. 8. PMID 38315140 DOI: 10.1097/HC9.0000000000000384  0.468
2023 Jinato T, Sikaroodi M, Fagan A, Sterling RK, Lee H, Puri P, Davis BC, Fuchs M, Gavis E, Gillevet PM, Bajaj JS. Alterations in gut virome are associated with cognitive function and minimal hepatic encephalopathy cross-sectionally and longitudinally in cirrhosis. Gut Microbes. 15: 2288168. PMID 38010871 DOI: 10.1080/19490976.2023.2288168  0.489
2023 Rodríguez MP, Fagan A, Sikaroodi M, Gillevet PM, Bajaj JS. Proton Pump Inhibitor use and Complications of Cirrhosis Are Linked with Distinct Gut Microbial Bacteriophage and Eukaryotic Viral Like Particle Signatures in Cirrhosis. Clinical and Translational Gastroenterology. PMID 37937851 DOI: 10.14309/ctg.0000000000000659  0.481
2022 Zawada SG, von Fricken ME, Weppelmann TA, Sikaroodi M, Gillevet PM. Genetic variation of in Fairfax County, Virginia, targeting the OspC gene in white-footed mice. Frontiers in Microbiology. 13: 998365. PMID 36466686 DOI: 10.3389/fmicb.2022.998365  0.461
2022 Bajaj JS, Peña-Rodriguez M, La Reau A, Phillips W, Fuchs M, Davis BC, Sterling RK, Sikaroodi M, Fagan A, Shamsaddini A, Henseler Z, Ward T, Puri P, Lee H, Gillevet PM. Longitudinal transkingdom gut microbial approach towards decompensation in outpatients with cirrhosis. Gut. PMID 36343978 DOI: 10.1136/gutjnl-2022-328403  0.488
2022 Wolstenholme JT, Saunders JM, Smith M, Kang JD, Hylemon PB, González-Maeso J, Fagan A, Zhao D, Sikaroodi M, Herzog J, Shamsaddini A, Peña-Rodríguez M, Su L, Tai YL, Zheng J, et al. Reduced alcohol preference and intake after fecal transplant in patients with alcohol use disorder is transmissible to germ-free mice. Nature Communications. 13: 6198. PMID 36261423 DOI: 10.1038/s41467-022-34054-6  0.499
2022 Bajaj JS, Reddy KR, Tandon P, Garcia-Tsao G, Kamath PS, O'Leary JG, Wong F, Lai J, Vargas H, Thuluvath PJ, Subramanian RM, Pena-Rodriguez M, Sikaroodi M, Thacker LR, Gillevet PM. Association of serum metabolites and gut microbiota at hospital admission with nosocomial infection development in patients with cirrhosis. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. PMID 36017804 DOI: 10.1002/lt.26552  0.5
2022 Saraf VS, Ali Zaidi SS, Zhu J, Gillevet P, Sikaroodi M, Bokhari H, Javed S. Pathogenic microbe detection in placental tissues supports placental pathobiome association with preterm birth risk in Pakistani women: A brief snapshot. Placenta. 126: 160-163. PMID 35839624 DOI: 10.1016/j.placenta.2022.07.002  0.472
2022 Bajaj JS, Rodriguez MP, Fagan A, McGeorge S, Sterling RK, Lee H, Luketic V, Fuchs M, Davis BC, Sikaroodi M, Gillevet PM. Impact of Bacterial Infections and SBP Prophylaxis on Phage-Bacterial Dynamics in Cirrhosis. Hepatology (Baltimore, Md.). PMID 35561076 DOI: 10.1002/hep.32571  0.479
2022 Bajaj JS, Fagan A, McGeorge S, Sterling RK, Rogal S, Sikaroodi M, Gillevet PM. Area Deprivation Index and Gut-Brain Axis in Cirrhosis. Clinical and Translational Gastroenterology. PMID 35537854 DOI: 10.14309/ctg.0000000000000495  0.534
2021 Hall NC, Sikaroodi M, Hogan D, Jones RC, Gillevet PM. The Presence of Denitrifiers In Bacterial Communities of Urban Stormwater Best Management Practices (BMPs). Environmental Management. PMID 34860281 DOI: 10.1007/s00267-021-01529-z  0.48
2021 Saboo K, Petrakov NV, Shamsaddini A, Fagan A, Gavis EA, Sikaroodi M, McGeorge S, Gillevet PM, Iyer RK, Bajaj JS. Stool microbiota are superior to saliva in distinguishing cirrhosis and hepatic encephalopathy using machine learning. Journal of Hepatology. PMID 34793867 DOI: 10.1016/j.jhep.2021.11.011  0.479
2021 Bajaj JS, Shamsaddini A, Acharya C, Fagan A, Sikaroodi M, Gavis E, McGeorge S, Khoruts A, Fuchs M, Sterling RK, Lee H, Gillevet PM. Multiple bacterial virulence factors focused on adherence and biofilm formation associate with outcomes in cirrhosis. Gut Microbes. 13: 1993584. PMID 34743650 DOI: 10.1080/19490976.2021.1993584  0.508
2021 Bajaj JS, Shamsaddini A, Fagan A, McGeorge S, Gavis E, Sikaroodi M, Brenner LA, Wade JB, Gillevet PM. Distinct gut microbial compositional and functional changes associated with impaired inhibitory control in patients with cirrhosis. Gut Microbes. 13: 1953247. PMID 34346283 DOI: 10.1080/19490976.2021.1953247  0.536
2021 Zhang Y, Kang JD, Zhao D, Ghosh SS, Wang Y, Tai Y, Gonzalez-Maeso J, Sikaroodi M, Gillevet PM, Lippman HR, Hylemon PB, Zhou H, Bajaj JS. Hepatic Branch Vagotomy Modulates the Gut-Liver-Brain Axis in Murine Cirrhosis. Frontiers in Physiology. 12: 702646. PMID 34248683 DOI: 10.3389/fphys.2021.702646  0.488
2021 Shamsaddini A, Gillevet PM, Acharya C, Fagan A, Gavis E, Sikaroodi M, McGeorge S, Khoruts A, Albaisi S, Fuchs M, Sterling RK, Bajaj JS. Impact of Antibiotic Resistance Genes in Gut Microbiome of Patients with Cirrhosis. Gastroenterology. PMID 33857456 DOI: 10.1053/j.gastro.2021.04.013  0.496
2021 Álvares-da-Silva MR, Oliveira CP, Fagan A, Longo L, Thoen RU, Yoshimura Zitelli PM, Tanaka Ferreira RM, Mcgeorge S, Shamsaddini A, Farias AQ, Sikaroodi M, Gillevet PM, Bajaj JS. Interaction of Microbiome, Diet, and Hospitalizations Between Brazilian and American Patients With Cirrhosis. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 33813071 DOI: 10.1016/j.cgh.2021.03.045  0.484
2021 Jung J, Gillevet PM, Sikaroodi M, Andrews J, Song B, Shields JD. Comparative study of the hemolymph microbiome between live and recently dead American lobsters Homarus americanus. Diseases of Aquatic Organisms. 143: 147-158. PMID 33629659 DOI: 10.3354/dao03568  0.533
2021 Bajaj JS, Shamsaddini A, Fagan A, Sterling RK, Gavis E, Khoruts A, Fuchs M, Lee H, Sikaroodi M, Gillevet PM. Fecal Microbiota Transplant in Cirrhosis Reduces Gut Microbial Antibiotic Resistance Genes: Analysis of Two Trials. Hepatology Communications. 5: 258-271. PMID 33553973 DOI: 10.1002/hep4.1639  0.487
2021 Albhaisi S, Shamsaddini A, Fagan A, McGeorge S, Sikaroodi M, Gavis E, Patel S, Davis BC, Acharya C, Sterling RK, Matherly S, Fuchs M, Gillevet PM, Bajaj JS. Gut Microbial Signature of Hepatocellular Cancer in Men with Cirrhosis. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. PMID 33492761 DOI: 10.1002/lt.25994  0.45
2020 Dal Forno M, Lawrey JD, Sikaroodi M, Gillevet PM, Schuettpelz E, Lücking R. Extensive photobiont sharing in a rapidly-radiating cyanolichen clade. Molecular Ecology. PMID 33080083 DOI: 10.1111/mec.15700  0.508
2020 Bajaj JS, Acharya C, Sikaroodi M, Gillevet PM, Thacker LR. Cost-effectiveness of integrating gut microbiota analysis into hospitalisation prediction in cirrhosis. Gastrohep. 2: 79-86. PMID 33071650 DOI: 10.1002/ygh2.390  0.495
2020 Bajaj JS, Sikaroodi M, Shamsaddini A, Henseler Z, Santiago-Rodiguez T, Acharya C, Fagan A, Hylemon PB, Fuchs M, Gavis E, Ward T, Knights D, Gillevet PM. Interaction of bacterial metagenome and virome in patients with cirrhosis and hepatic encephalopathy. Gut. PMID 32998876 DOI: 10.1136/gutjnl-2020-322470  0.549
2020 Bajaj JS, Gavis EA, Fagan A, Wade JB, Thacker LR, Fuchs M, Patel S, Davis B, Meador J, Puri P, Sikaroodi M, Gillevet PM. A Randomized Clinical Trial of Fecal Microbiota Transplant for Alcohol Use Disorder. Hepatology (Baltimore, Md.). PMID 32750174 DOI: 10.1002/Hep.31496  0.53
2020 Bajaj JS, Reddy KR, O'Leary JG, Vargas HE, Lai JC, Kamath PS, Tandon P, Wong F, Subramanian RM, Thuluvath P, Fagan A, White MB, Gavis EA, Sehrawat T, Rodriguez RR, ... ... Sikaroodi M, et al. Serum Levels of Metabolites Produced by Intestinal Microbes and Lipid Moieties Independently Associated With Acute on Chronic Liver Failure and Death in Patients With Cirrhosis. Gastroenterology. PMID 32687928 DOI: 10.1053/J.Gastro.2020.07.019  0.541
2020 Saboo K, Shamsaddini A, Iyer MV, Hu C, Fagan A, Gavis EA, White MB, Fuchs M, Heuman DM, Sikaroodi M, Iyer RK, Gillevet PM, Bajaj JS. Sex is associated with differences in gut microbial composition and function in hepatic encephalopathy. Journal of Hepatology. PMID 32679299 DOI: 10.1016/J.Jhep.2020.06.046  0.574
2020 Bajaj JS, Torre A, Lara Rojas M, Fagan A, Nandez IE, Gavis EA, De Leon Osorio O, White MB, Fuchs M, Sikaroodi M, Gillevet PM. Cognition and Hospitalizations are Linked with Salivary and Fecal Microbiota in Cirrhosis Cohorts from USA and Mexico. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 32181561 DOI: 10.1111/Liv.14437  0.537
2020 Saunders JM, Moreno JL, Ibi D, Sikaroodi M, Kang DJ, Muñoz-Moreno R, Dalmet SS, García-Sastre A, Gillevet PM, Dozmorov MG, Bajaj JS, González-Maeso J. Gut microbiota manipulation during the prepubertal period shapes behavioral abnormalities in a mouse neurodevelopmental disorder model. Scientific Reports. 10: 4697. PMID 32170216 DOI: 10.1038/S41598-020-61635-6  0.533
2020 Smirnova E, Puri P, Muthiah MD, Daitya K, Brown R, Chalasani N, Liangpunsakul S, Shah VH, Gelow K, Siddiqui MS, Boyett S, Mirshahi F, Sikaroodi M, Gillevet P, Sanyal AJ. Fecal microbiome distinguishes alcohol consumption from alcoholic hepatitis but does not discriminate disease severity. Hepatology (Baltimore, Md.). PMID 32056227 DOI: 10.1002/Hep.31178  0.557
2020 Zawada SG, von Fricken ME, Weppelmann TA, Sikaroodi M, Gillevet PM. Optimization of tissue sampling for Borrelia burgdorferi in white-footed mice (Peromyscus leucopus). Plos One. 15: e0226798. PMID 31978068 DOI: 10.1371/Journal.Pone.0226798  0.517
2020 Lawrey JD, Sikaroodi M, Gillevet PM, Diederich P. A new species of bulbil-forming lichenicolous fungi represents an isolated clade in the Cantharellales The Bryologist. 123: 155. DOI: 10.1639/0007-2745-123.2.155  0.541
2020 Bajaj JS, Torre A, Fagan A, Lara MVR, Gavis E, De Leon-Osorio OA, Fuchs M, Nandez IE, White MB, Sikaroodi M, Gillevet PM. Su1598 GUT MICROBIOTA ARE ASSOCIATED WITH MINIMAL HEPATIC ENCEPHALOPATHY (MHE) IN CIRRHOSIS REGARDLESS OF COUNTRY OF ORIGIN Gastroenterology. 158: S-1352. DOI: 10.1016/s0016-5085(20)34051-8  0.515
2020 Zhang Y, Kang D, Zhao D, Yan J, Ghosh S, Sikaroodi M, Tai Y, Wang Y, Gurley E, Liu R, Gillevet PM, Hylemon P, Zhou H, Bajaj JS. Su1592 NEURO AND HEPATIC INFLAMMATION AND STEATOSIS ARE MODULATED BY GUT MICROBIAL CHANGES AFTER ISOLATED HEPATIC VAGOTOMY AND ANTIBIOTICS IN CIRRHOSIS Gastroenterology. 158: S-1349-S-1350. DOI: 10.1016/S0016-5085(20)34045-2  0.51
2020 Bajaj JS, Fagan A, Gavis E, Fuchs M, Sikaroodi M, Puri P, Davis B, Patel SS, Gillevet PM. 626 FECAL MICROBIOTA TRANSPLANT REDUCES SHORT-TERM CRAVING, IMPROVES PSYCHOSOCIAL FUNCTION AND MICROBIAL DIVERSITY IN CIRRHOSIS AND ALCOHOL USE DISORDER: A PLACEBO-CONTROLLED RANDOMIZED CLINICAL TRIAL. Gastroenterology. 158: S-1282-S-1283. DOI: 10.1016/s0016-5085(20)33869-5  0.482
2020 Bajaj JS, Lara MVR, Fagan A, Gavis E, Nandez IE, McGeorge S, White MB, Fuchs M, De Leon-Osorio OA, Sikaroodi M, Gillevet PM, Torre A. Tu1934 SALIVARY AND STOOL MICROBIOTA DIFFERENCES ARE RELATED TO HIGHER 90-DAY HOSPITALIZATIONS IN MEXICAN COMPARED TO AMERICAN PATIENTS WITH CIRRHOSIS Gastroenterology. 158: S-1224. DOI: 10.1016/s0016-5085(20)33721-5  0.468
2020 Bajaj JS, Acharya C, Sikaroodi M, Gillevet PM, Thacker LR. Cost‐effectiveness of integrating gut microbiota analysis into hospitalisation prediction in cirrhosis Gastrohep. 2: 79-86. DOI: 10.1002/ygh2.390  0.49
2019 Bajaj JS, Salzman N, Acharya C, Takei H, Kakiyama G, Fagan A, White MB, Gavis EA, Holtz ML, Hayward M, Nittono H, Hylemon PB, Cox IJ, Williams R, Taylor-Robinson SD, ... ... Sikaroodi M, et al. Microbial Functional Change is Linked with Clinical Outcomes after Capsular Fecal Transplant in Cirrhosis. Jci Insight. PMID 31751317 DOI: 10.1172/Jci.Insight.133410  0.56
2019 Cox IJ, Idiliman R, Fagan A, Turan D, Ajayi L, Le Guennec AD, Taylor-Robinson SD, Karakaya F, Gavis E, Andrew Atkinson R, Williams R, Sikaroodi M, Nizam S, Gillevet PM, Bajaj JS. Metabolomics and Microbial Composition Increase Insight into the Impact of Dietary Differences in Cirrhosis. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 31544308 DOI: 10.1111/Liv.14256  0.583
2019 Bajaj JS, Sikaroodi M, Fagan A, Heuman DM, Gilles HC, Gavis EA, Fuchs M, Gonzalez-Maeso J, Nizam S, Gillevet PM, Wade JB. Post-Traumatic Stress Disorder is Associated with Altered Gut Microbiota that Modulates Cognitive Performance in Veterans with Cirrhosis. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 31460790 DOI: 10.1152/Ajpgi.00194.2019  0.547
2019 Dadkhah E, Sikaroodi M, Korman L, Hardi R, Baybick J, Hanzel D, Kuehn G, Kuehn T, Gillevet PM. Gut microbiome identifies risk for colorectal polyps. Bmj Open Gastroenterology. 6: e000297. PMID 31275588 DOI: 10.1136/Bmjgast-2019-000297  0.509
2019 Solano-Aguilar G, Shao J, Urban J, Lakshman S, Jang S, Lozano V, Sikaroodi M, Gupta R, Gillevet P, Molokin A, Vinyard B, Humphrys M, Proszkowiec-Weglarz M, Beshah E, Lamon-Fava S, et al. Dietary Patterns Differentially Affect Microbiome Composition and Function in a Porcine Model of Obesity-related Metabolic Disorder (OR23-04-19). Current Developments in Nutrition. 3. PMID 31223764 DOI: 10.1093/cdn/nzz040.OR23-04-19  0.446
2019 Liu R, Kang JD, Sartor RB, Sikaroodi M, Fagan A, Gavis EA, Zhou H, Hylemon PB, Herzog JW, Li X, Lippman RH, Maeso JG, Wade JB, Ghosh S, Gurley E, et al. Neuroinflammation in Murine Cirrhosis is Dependent on the Gut Microbiome and is Attenuated by Fecal Transplant. Hepatology (Baltimore, Md.). PMID 31220352 DOI: 10.1002/Hep.30827  0.571
2019 Bajaj JS, Salzman NH, Acharya C, Sterling RK, White MB, Gavis EA, Fagan A, Hayward M, Holtz ML, Matherly S, Lee H, Osman M, Siddiqui MS, Fuchs M, Puri P, ... Sikaroodi M, et al. Fecal Microbial Transplant Capsules are Safe in Hepatic Encephalopathy: A Phase 1, Randomized, Placebo-Controlled Trial. Hepatology (Baltimore, Md.). PMID 31038755 DOI: 10.1002/Hep.30690  0.546
2019 Bajaj JS, Fagan A, Sikaroodi M, Kakiyama G, Takei H, Degefu Y, Pandak WM, Hylemon PB, Fuchs M, John B, Heuman DM, Gavis E, Nittono H, Patil R, Gillevet PM. Alterations in Skin Microbiomes of Patients With Cirrhosis. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 30905718 DOI: 10.1016/J.Cgh.2019.03.028  0.543
2019 Bajaj JS, Fagan A, White MB, Wade JB, Hylemon PB, Heuman DM, Fuchs M, John BV, Acharya C, Sikaroodi M, Gillevet PM. Specific Gut and Salivary Microbiota Patterns Are Linked With Different Cognitive Testing Strategies in Minimal Hepatic Encephalopathy. The American Journal of Gastroenterology. PMID 30816877 DOI: 10.14309/Ajg.0000000000000102  0.567
2019 Bajaj JS, Fagan A, Gavis EA, Kassam Z, Sikaroodi M, Gillevet PM. Long-term Outcomes after Fecal Microbiota Transplant in Cirrhosis. Gastroenterology. PMID 30664879 DOI: 10.1053/J.Gastro.2019.01.033  0.513
2019 Bajaj JS, Fagan A, Sikaroodi M, Kakiyama G, Pandak W, Takei H, Gavis E, Hylemon P, Heuman D, Nittono H, Gillevet P. SAT-012-Alterations in skin microbiota, serum bile acids and autotaxin modulate itching intensity in patients with cirrhosis Journal of Hepatology. 70: e630. DOI: 10.1016/S0618-8278(19)31255-1  0.467
2019 Bajaj JS, Salzman N, Acharya C, Sterling R, Fagan A, White M, Gavis E, Osman M, Hayward M, Holtz M, Matherly S, Stravitz RT, Siddiqui M, Fuchs M, John B, ... Sikaroodi M, et al. PS-087-Fecal microbiota capsules are safe and effective in patients with recurrent hepatic encephalopathy: A randomized, blinded, placebo-controlled trial Journal of Hepatology. 70: e55. DOI: 10.1016/S0618-8278(19)30099-4  0.471
2019 Bajaj JS, Fagan A, Sikaroodi M, Kakiyama G, Pandak WM, Nittono H, Takei H, Gavis E, Hylemon P, Heuman D, Gillevet PM. 408 – Alterations in Skin Microbiota, Serum Bile Acids and Autotaxin Modulate Itching Intensity in Patients with Cirrhosis Gastroenterology. 156: S-1196-S-1197. DOI: 10.1016/S0016-5085(19)39968-8  0.464
2019 Bajaj JS, Salzman N, Acharya C, Sterling RK, Cox J, Hayward M, Holtz M, Atkinson A, Williams R, Taylor-Robinson SD, Matherly S, White MB, Gavis E, Osman M, Siddiqui MS, ... ... Sikaroodi M, et al. 245 – Fecal Microbiota Capsular Transplant is Safe and Effective in Patients with Recurrent Hepatic Encephalopathy: A Randomized, Blinded, Placebo-Controlled Trial Gastroenterology. 156: S-1186. DOI: 10.1016/S0016-5085(19)39938-X  0.476
2018 Solano-Aguilar GI, Jang S, Lakshman S, Gupta R, Beshah E, Sikaroodi M, Vinyard B, Molokin A, Gillevet PM, Urban JF. The Effect of Dietary Mushroom on Intestinal Microbiota Composition and Host Immunological Function. Nutrients. 10. PMID 30424006 DOI: 10.3390/Nu10111721  0.559
2018 Bajaj JS, Matin P, White MB, Fagan A, Golob Deeb J, Acharya C, Dalmet SS, Sikaroodi M, Gillevet PM, Sahingur SE. Periodontal Therapy Favorably Modulates the Oral-Gut-Hepatic Axis in Cirrhosis. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 30118351 DOI: 10.1152/Ajpgi.00230.2018  0.545
2018 Bajaj JS, Vargas HE, Reddy KR, Lai JC, O'leary JG, Tandon P, Wong F, Mitrani R, White MB, Kelly M, Fagan A, Patil R, Sait S, Sikaroodi M, Thacker LR, et al. Association Between Intestinal Microbiota Collected at Hospital Admission and Outcomes of Patients with Cirrhosis. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 30036646 DOI: 10.1016/J.Cgh.2018.07.022  0.561
2018 Solano-Aguilar GI, Lakshman S, Jang S, Beshah E, Xie Y, Sikaroodi M, Gupta R, Vinyard B, Molokin A, Urban JF, Gillevet P, Davis CD. The Effect of Feeding Cocoa Powder and on the Composition and Function of Pig Intestinal Microbiome. Current Developments in Nutrition. 2: nzy011. PMID 30019034 DOI: 10.1093/cdn/nzy011  0.505
2018 Laffin MR, Perry T, Park H, Gillevet P, Sikaroodi M, Kaplan GG, Fedorak RN, Kroeker K, Dieleman LA, Dicken B, Madsen KL. Endospore forming bacteria may be associated with maintenance of surgically-induced remission in Crohn's disease. Scientific Reports. 8: 9734. PMID 29950676 DOI: 10.1038/S41598-018-28071-Z  0.574
2018 Bajaj JS, Acharya C, Fagan A, White MB, Gavis E, Heuman DM, Hylemon PB, Fuchs M, Puri P, Schubert ML, Sanyal AJ, Sterling RK, Stravitz RT, Siddiqui MS, Luketic V, ... ... Sikaroodi M, et al. Proton Pump Inhibitor Initiation and Withdrawal affects Gut Microbiota and Readmission Risk in Cirrhosis. The American Journal of Gastroenterology. PMID 29872220 DOI: 10.1038/S41395-018-0085-9  0.564
2018 Bajaj JS, Kakiyama G, Savidge T, Takei H, Kassam ZA, Fagan A, Gavis EA, Pandak WM, Nittono H, Hylemon PB, Boonma P, Haag A, Heuman DM, Fuchs M, John B, ... Sikaroodi M, et al. Antibiotic-Associated Disruption of Microbiota Composition and Function in Cirrhosis is Restored by Fecal Transplant. Hepatology (Baltimore, Md.). PMID 29665102 DOI: 10.1002/Hep.30037  0.581
2018 Keshteli AH, Tso R, Dieleman LA, Park H, Kroeker KI, Jovel J, Gillevet PM, Sikaroodi M, Mandal R, Fedorak RN, Madsen KL. A Distinctive Urinary Metabolomic Fingerprint Is Linked With Endoscopic Postoperative Disease Recurrence in Crohn's Disease Patients. Inflammatory Bowel Diseases. 24: 861-870. PMID 29562272 DOI: 10.1093/Ibd/Izx070  0.548
2018 Bajaj JS, Thacker LR, Fagan A, White MB, Gavis EA, Hylemon PB, Brown R, Acharya C, Heuman DM, Fuchs M, Dalmet S, Sikaroodi M, Gillevet PM. Gut microbial RNA and DNA analysis predicts hospitalizations in cirrhosis. Jci Insight. 3. PMID 29515036 DOI: 10.1172/Jci.Insight.98019  0.553
2018 Bajaj JS, Kakiyama G, Cox IJ, Nittono H, Takei H, White M, Fagan A, Gavis EA, Heuman DM, Gilles HC, Hylemon P, Taylor-Robinson SD, Legido-Quigley C, Kim M, Xu J, ... ... Sikaroodi M, et al. Alterations in Gut Microbial Function Following Liver Transplant. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. PMID 29500907 DOI: 10.1002/Lt.25046  0.57
2018 Bajaj JS, Idilman R, Mabudian L, Hood M, Fagan A, Turan D, White MB, Karakaya F, Wang J, Atalay R, Hylemon PB, Gavis EA, Brown R, Thacker LR, Acharya C, ... ... Sikaroodi M, et al. Diet Affects Gut Microbiota and Modulates Hospitalization Risk Differentially In an International Cirrhosis Cohort. Hepatology (Baltimore, Md.). PMID 29350768 DOI: 10.1016/S0168-8278(18)30241-1  0.551
2018 Reardon KM, Wilson CJ, Gillevet PM, Sikaroodi M, Shields JD. Increasing prevalence of epizootic shell disease in American lobster from the nearshore Gulf of Maine Bulletin of Marine Science. 94: 903-921. DOI: 10.5343/Bms.2017.1144  0.536
2018 Laffin M, Perry T, Park H, Gillevet P, Sikaroodi M, Kaplan GG, Fedorak R, Kroeker KI, Dieleman LA, Dicken B, Madsen K. A83 THE MUCOSA-ASSOCIATED-MICROBIOTA IS ASSOCIATED WITH RELAPSE IN CROHN’S DISEASE PATIENTS UNDERGOING ILEOCECAL RESECTION Journal of the Canadian Association of Gastroenterology. 1: 143-144. DOI: 10.1093/jcag/gwy008.084  0.487
2018 Puri P, Mirshahi F, Liangpunsakul S, Crabb D, Shah V, Gores G, Kamath P, Malhi H, Sikaroodi M, Raedeva S, Gillevet P, Chalasani N, Sanyal A. The bile acid biome and its relationship to the development and severity of alcoholic hepatitis Journal of Hepatology. 68: S811. DOI: 10.1016/S0168-8278(18)31894-4  0.516
2018 Bajaj J, Fagan A, Heuman D, Gavis E, Fuchs M, John B, Kassam Z, Sikaroodi M, Gillevet P. Sustained long-term improvement in clinical and cognitive outcomes after fecal microbiota transplantation in cirrhosis Journal of Hepatology. 68: S752-S753. DOI: 10.1016/S0168-8278(18)31771-9  0.523
2018 Bajaj J, Fagan A, Kakiyama G, Savidge T, Gavis E, Sikaroodi M, Heuman D, Nittono H, Takei H, Kassam Z, Fuchs M, Boonma P, Haag A, Gillevet P. Antibiotic-associated disruption of microbial composition and functionality is restored after fecal transplant in cirrhosis Journal of Hepatology. 68: S702. DOI: 10.1016/S0168-8278(18)31668-4  0.556
2018 Acharya C, Fagan A, Gavis E, White MB, Sikaroodi M, Gillevet PM, Bajaj JS. Su1564 - Renal Dysfunction is Associated with Gut Microbiota Changes in Cirrhosis Gastroenterology. 154: S-1179. DOI: 10.1016/s0016-5085(18)33905-2  0.471
2018 Bajaj JS, Kakiyama G, Savidge TC, Fagan A, Gavis E, Nittono H, Hylemon P, Boonma P, Haag A, Heuman D, Kassam Z, Sikaroodi M, Gillevet PM. 803 - Antibiotic-Associated Disruption of Microbial Composition and Functionality is Restored after Fecal Microbial Transplant in Cirrhosis Gastroenterology. 154: S-1107. DOI: 10.1016/S0016-5085(18)33680-1  0.517
2018 Bajaj JS, Fagan A, Gavis E, Heuman D, John B, Fuchs M, Sikaroodi M, Gillevet PM. Tu1512 - Proton Pump Inhibitor Initiation and Withdrawal can Modulate Gut Microbiota in Patients with Decompensated Cirrhosis Gastroenterology. 154: S-948-S-949. DOI: 10.1016/S0016-5085(18)33197-4  0.482
2018 Fagan A, Gavis E, Kassam Z, Heuman D, Fuchs M, John B, Sikaroodi M, Gillevet PM, Bajaj JS. 232 - Sustained Long-Term Clinical and Cognitive Improvement after Fecal Microbiota Transplantation in Cirrhosis Gastroenterology. 154: S-59-S-60. DOI: 10.1016/S0016-5085(18)30656-5  0.471
2018 Kaur A, Tuncil YE, Sikaroodi M, Gillevet P, Patterson JA, Keshavarzian A, Hamaker BR. Alterations in the amounts of microbial metabolites in different regions of the mouse large intestine using variably fermentable fibres Bioactive Carbohydrates and Dietary Fibre. 13: 7-13. DOI: 10.1016/J.Bcdf.2018.01.001  0.56
2017 Kang DJ, Hylemon PB, Gillevet PM, Sartor RB, Betrapally NS, Kakiyama G, Sikaroodi M, Takei H, Nittono H, Zhou H, Pandak WM, Yang J, Jiao C, Li X, Lippman HR, et al. Gut microbial composition can differentially regulate bile acid synthesis in humanized mice. Hepatology Communications. 1: 61-70. PMID 29404434 DOI: 10.1002/hep4.1020  0.482
2017 Llorente C, Jepsen P, Inamine T, Wang L, Bluemel S, Wang HJ, Loomba R, Bajaj JS, Schubert ML, Sikaroodi M, Gillevet PM, Xu J, Kisseleva T, Ho SB, DePew J, et al. Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus. Nature Communications. 8: 2137. PMID 29233961 DOI: 10.1038/S41467-017-01779-8  0.522
2017 Llorente C, Jepsen P, Inamine T, Wang L, Bluemel S, Wang HJ, Loomba R, Bajaj JS, Schubert ML, Sikaroodi M, Gillevet PM, Xu J, Kisseleva T, Ho SB, DePew J, et al. Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus. Nature Communications. 8: 837. PMID 29038503 DOI: 10.1038/S41467-017-00796-X  0.564
2017 Bajaj JS, Kakiyama G, Zhao D, Takei H, Fagan A, Hylemon P, Zhou H, Pandak WM, Nittono H, Fiehn O, Salzman N, Holtz M, Simpson P, Gavis EA, Heuman DM, ... ... Sikaroodi M, et al. Continued Alcohol Misuse in Human Cirrhosis is Associated with An Impaired Gut-Liver Axis. Alcoholism, Clinical and Experimental Research. PMID 28925102 DOI: 10.1111/Acer.13498  0.552
2017 Bajaj JS, Kassam Z, Fagan A, Gavis EA, Liu E, Cox IJ, Kheradman R, Heuman D, Wang J, Gurry T, Williams R, Sikaroodi M, Fuchs M, Alm E, John B, et al. Fecal Microbiota Transplant from a Rational Stool Donor Improves Hepatic Encephalopathy: A Randomized Clinical Trial. Hepatology (Baltimore, Md.). PMID 28586116 DOI: 10.1002/Hep.29306  0.567
2017 Bajaj JS, Liu EJ, Kheradman R, Fagan A, Heuman DM, White M, Gavis EA, Hylemon P, Sikaroodi M, Gillevet PM. Fungal dysbiosis in cirrhosis. Gut. PMID 28578302 DOI: 10.1136/Gutjnl-2016-313170  0.539
2017 Bajaj JS, Fagan A, Sikaroodi M, White MB, Sterling RK, Gilles H, Heuman D, Stravitz RT, Matherly SC, Siddiqui MS, Puri P, Sanyal AJ, Luketic V, John B, Fuchs M, et al. Liver Transplant Modulates Gut Microbial Dysbiosis and Cognitive Function in Cirrhosis. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. PMID 28240840 DOI: 10.1002/Lt.24754  0.56
2017 Bhedi CD, Prevatte CW, Lookadoo MS, Waikel PA, Gillevet PM, Sikaroodi M, Campagna SR, Richardson LL. Elevated Temperature Enhances Short to Medium Chain Acyl Homoserine Lactone Production by Black Band Disease Associated Vibrios. Fems Microbiology Ecology. PMID 28137764 DOI: 10.1093/Femsec/Fix005  0.544
2017 Bajaj J, Fagan A, Wade J, Fagan A, Gavis E, White M, Ganapathy D, Heuman D, Sikaroodi M, Fuchs M, John B, Gilles H, Gillevet P. Gut microbiota are associated with impaired brain recovery after liver transplant Journal of Hepatology. 66: S63-S64. DOI: 10.1016/S0168-8278(17)30388-4  0.552
2017 Bajaj JS, Kassam Z, Fagan A, Gavis E, Liu EJ, Kheradman R, Wang J, Cox J, Taylor-Robinson SD, Sikaroodi M, Alm E, Gurry T, Smith M, John B, Heuman D, et al. Fecal Microbiota Transplant Using a Precision Medicine Approach is Safe, Associated with Lower Hospitalization Risk and Improved Cognitive Function in Recurrent Hepatic Encephalopathy Gastroenterology. 152: S906. DOI: 10.1016/S0168-8278(17)30361-6  0.543
2017 Bajaj J, Kassam Z, Fagan A, Gavis E, Liu E, Cox J, Kheradman R, Heuman D, Wang J, Gurry T, Williams R, Sikaroodi M, Fuchs M, Alm E, John B, et al. Fecal microbiota transplant using a precision medicine approach is safe, Associated with lower hospitalization risk and improved cognitive function in recurrent hepatic encephalopathy Journal of Hepatology. 66: S49. DOI: 10.1016/S0168-8278(17)30361-6  0.489
2017 Bajaj JS, Fagan A, Gilles H, Heuman D, Sikaroodi M, Wade J, John B, Fuchs M, Gillevet PM. Gut Microbiota are Associated with Impaired Brain Recovery after Liver Transplant Gastroenterology. 152: S1066. DOI: 10.1016/S0016-5085(17)33600-4  0.499
2017 Laffin M, Perry T, Park H, Gillevet PM, Sikaroodi M, Kaplan G, Fedorak RN, Kroeker K, Dieleman LA, Dicken B, Madsen K. Endospore-Forming Bacteria are Associated with Maintenance of Remission following Intestinal Resection in Crohn’s Disease Gastroenterology. 152: S192-S193. DOI: 10.1016/S0016-5085(17)30952-6  0.576
2017 Gillevet PM, Dadkhah E, Sikaroodi M, Dalmet S, Korman LY, Hardi R, Baybick JH, Hanzel DK, Kuehn G, Kuehn T. Use of the Microbiome as a Biomarker to Identify Patients with Colorectal Polyps Gastroenterology. 152: S152. DOI: 10.1016/S0016-5085(17)30830-2  0.456
2016 Bajaj JS, Ahluwalia V, Steinberg JL, Hobgood S, Boling PA, Godschalk M, Habib S, White MB, Fagan A, Gavis EA, Ganapathy D, Hylemon PB, Stewart KE, Keradman R, Liu EJ, ... ... Sikaroodi M, et al. Elderly patients have an altered gut-brain axis regardless of the presence of cirrhosis. Scientific Reports. 6: 38481. PMID 27922089 DOI: 10.1038/Srep38481  0.554
2016 Acharya C, Betrapally NS, Gillevet PM, Sterling RK, Akbarali H, White MB, Ganapathy D, Fagan A, Sikaroodi M, Bajaj JS. Chronic opioid use is associated with altered gut microbiota and predicts readmissions in patients with cirrhosis. Alimentary Pharmacology & Therapeutics. PMID 27868217 DOI: 10.1111/Apt.13858  0.542
2016 Kang DJ, Kakiyama G, Betrapally NS, Herzog J, Nittono H, Hylemon PB, Zhou H, Carroll I, Yang J, Gillevet PM, Jiao C, Takei H, Pandak WM, Iida T, Heuman DM, ... ... Sikaroodi M, et al. Rifaximin Exerts Beneficial Effects Independent of its Ability to Alter Microbiota Composition. Clinical and Translational Gastroenterology. 7: e187. PMID 27560928 DOI: 10.1038/Ctg.2016.44  0.572
2016 Bajaj JS, Sterling RK, Betrapally NS, Nixon DE, Fuchs M, Daita K, Heuman DM, Sikaroodi M, Hylemon PB, White MB, Ganapathy D, Gillevet PM. HCV eradication does not impact gut dysbiosis or systemic inflammation in cirrhotic patients. Alimentary Pharmacology & Therapeutics. PMID 27417456 DOI: 10.1016/S0168-8278(16)01141-7  0.523
2016 Kang DJ, Betrapally NS, Ghosh SA, Sartor RB, Hylemon PB, Gillevet PM, Sanyal AJ, Heuman DM, Carl D, Zhou H, Liu R, Wang X, Yang J, Jiao C, Herzog J, ... ... Sikaroodi M, et al. Gut microbiota drive the development of neuro-inflammatory response in cirrhosis. Hepatology (Baltimore, Md.). PMID 27339732 DOI: 10.1002/Hep.28696  0.557
2016 Ahluwalia V, Betrapally NS, Hylemon PB, White MB, Gillevet PM, Unser AB, Fagan A, Daita K, Heuman DM, Zhou H, Sikaroodi M, Bajaj JS. Impaired Gut-Liver-Brain Axis in Patients with Cirrhosis. Scientific Reports. 6: 26800. PMID 27225869 DOI: 10.1038/Srep26800  0.564
2016 Miller GE, Engen PA, Gillevet PM, Shaikh M, Sikaroodi M, Forsyth CB, Mutlu E, Keshavarzian A. Lower Neighborhood Socioeconomic Status Associated with Reduced Diversity of the Colonic Microbiota in Healthy Adults. Plos One. 11: e0148952. PMID 26859894 DOI: 10.1371/Journal.Pone.0148952  0.593
2016 Bajaj JS, Betrapally NS, Hylemon PB, Thacker LR, Daita K, Kang DJ, White MB, Unser AB, Fagan A, Gavis EA, Sikaroodi M, Dalmet S, Heuman DM, Gillevet PM. Erratum: Gut Microbiota Alterations can predict Hospitalizations in Cirrhosis Independent of Diabetes Mellitus. Scientific Reports. 6: 20447. PMID 26823047 DOI: 10.1038/srep20447  0.451
2016 Kang D, Balfour Sartor R, Betrapally N, Nittono H, Herzog J, Hylemon P, SIkaroodi M, Gillevet P, Carroll I, Kakiyama G, Zhou H, Yang J, Jiao C, Fan S, Fiehn O, et al. The Beneficial Impact of Rifaximin on Systemic and Intestinal Inflammation and Ammonia Occurs even without Microbiota: More than an Antibiotic Journal of Hepatology. 64: S447. DOI: 10.1016/S0168-8278(16)00741-8  0.55
2016 Bajaj JS, Hylemon P, White MB, Unser A, Sikaroodi M, Heuman D, Sterling R, Fagan A, Gillevet PM. 1096 Chronic Opioid Therapy Is Associated With Gut Dysbiosis in Cirrhosis Independent of Cirrhosis Severity Gastroenterology. 150: S219. DOI: 10.1016/S0168-8278(16)00740-6  0.525
2016 Bajaj J, Sterling R, Hylemon P, Nixon D, Heuman D, SIkaroodi M, Gillevet P. Chronic Opioid Therapy is Associated with Gut Dysbiosis in Cirrhosis Independent of Cirrhosis Severity Journal of Hepatology. 64: S446-S447. DOI: 10.1016/S0168-8278(16)00740-6  0.469
2016 Kang D, Sartor RB, Kakiyama G, Betrapally N, Herzog J, Nittono H, Hylemon P, Zhou H, Carroll I, Yang J, Gillevet PM, Jiao C, Takei H, Fan S, Fiehn O, ... ... Sikaroodi M, et al. 280 The Beneficial Impact of Rifaximin on Systemic and Intestinal Inflammation and Ammonia Occurs Even Without Microbiota: More Than an Antibiotic Gastroenterology. 150: S1022-S1023. DOI: 10.1016/S0016-5085(16)33464-3  0.55
2016 Lücking R, Forno MD, Moncada B, Coca LF, Vargas-Mendoza LY, Aptroot A, Arias LJ, Besal B, Bungartz F, Cabrera-Amaya DM, Cáceres MES, Chaves JL, Eliasaro S, Gutiérrez MC, Hernández Marin JE, ... ... Sikaroodi M, et al. Turbo-taxonomy to assemble a megadiverse lichen genus: seventy new species of Cora (Basidiomycota: Agaricales: Hygrophoraceae), honouring David Leslie Hawksworth’s seventieth birthday Fungal Diversity. 84: 139-207. DOI: 10.1007/S13225-016-0374-9  0.477
2015 Almeida-Dalmet S, Sikaroodi M, Gillevet PM, Litchfield CD, Baxter BK. Temporal Study of the Microbial Diversity of the North Arm of Great Salt Lake, Utah, U.S. Microorganisms. 3: 310-26. PMID 27682091 DOI: 10.3390/microorganisms3030310  0.529
2015 Bajaj JS, Betrapally NS, Hylemon PB, Thacker LR, Daita K, Kang DJ, White MB, Unser AB, Fagan A, Gavis EA, Sikaroodi M, Dalmet S, Heuman DM, Gillevet PM. Gut Microbiota Alterations can predict Hospitalizations in Cirrhosis Independent of Diabetes Mellitus. Scientific Reports. 5: 18559. PMID 26692421 DOI: 10.1038/Srep18559  0.536
2015 Dal-Forno M, Lucking R, Bungartz F, Yánez-Ayabaca A, Marcelli MP, Spielmann AA, Coca LF, Chaves JL, Aptroot A, Sipman H, Sikaroodi M, Gillevet PM, Lawrey JD. From one to six: unrecognized species diversity in the genus Acantholichen (lichenized Basidiomycota: Hygrophoraceae). Mycologia. PMID 26577612 DOI: 10.3852/15-060  0.548
2015 Frankenfeld CL, Sikaroodi M, Lamb E, Shoemaker S, Gillevet PM. High-intensity sweetener consumption and gut microbiome content and predicted gene function in a cross-sectional study of adults in the United States. Annals of Epidemiology. 25: 736-742.e4. PMID 26272781 DOI: 10.1016/J.Annepidem.2015.06.083  0.517
2015 Valcheva R, Hotte N, Gillevet P, Sikaroodi M, Thiessen A, Madsen KL. Soluble Dextrin Fibers Alter the Intestinal Microbiota and Reduce Proinflammatory Cytokine Secretion in Male IL-10-Deficient Mice. The Journal of Nutrition. 145: 2060-6. PMID 26180249 DOI: 10.3945/Jn.114.207738  0.509
2015 Brown RE, Ghannoum MA, Mukherjee PK, Gillevet PM, Sikaroodi M. Quorum-sensing dysbiotic shifts in the HIV-infected oral metabiome. Plos One. 10: e0123880. PMID 25886290 DOI: 10.1371/Journal.Pone.0123880  0.55
2015 Bajaj JS, Betrapally NS, Hylemon PB, Heuman DM, Daita K, White MB, Unser A, Thacker LR, Sanyal AJ, Kang DJ, Sikaroodi M, Gillevet PM. Salivary microbiota reflects changes in gut microbiota in cirrhosis with hepatic encephalopathy. Hepatology (Baltimore, Md.). PMID 25820757 DOI: 10.1002/Hep.27819  0.593
2015 Wisittipanit N, Rangwala H, Sikaroodi M, Keshavarzian A, Mutlu EA, Gillevet P. Classification methods for the analysis of LH-PCR data associated with inflammatory bowel disease patients. International Journal of Bioinformatics Research and Applications. 11: 111-29. PMID 25786791 DOI: 10.1504/Ijbra.2015.068087  0.793
2014 Bajaj JS, Cox IJ, Betrapally NS, Heuman DM, Schubert ML, Ratneswaran M, Hylemon PB, White MB, Daita K, Noble NA, Sikaroodi M, Williams R, Crossey MM, Taylor-Robinson SD, Gillevet PM. Systems biology analysis of omeprazole therapy in cirrhosis demonstrates significant shifts in gut microbiota composition and function. American Journal of Physiology. Gastrointestinal and Liver Physiology. 307: G951-7. PMID 25258407 DOI: 10.1152/Ajpgi.00268.2014  0.579
2014 Lücking R, Dal-Forno M, Sikaroodi M, Gillevet PM, Bungartz F, Moncada B, Yánez-Ayabaca A, Chaves JL, Coca LF, Lawrey JD. A single macrolichen constitutes hundreds of unrecognized species. Proceedings of the National Academy of Sciences of the United States of America. 111: 11091-6. PMID 24982168 DOI: 10.1073/Pnas.1403517111  0.534
2014 Benning L, Golub ET, Anastos K, French AL, Cohen M, Gilbert D, Gillevet P, Munyazesa E, Landay AL, Sikaroodi M, Spear GT. Comparison of lower genital tract microbiota in HIV-infected and uninfected women from Rwanda and the US. Plos One. 9: e96844. PMID 24817204 DOI: 10.1371/Journal.Pone.0096844  0.509
2014 Idrees M, Thangavelu K, Sikaroodi M, Smith C, Sivaraman J, Gillevet PM, Bokhari H. Novel fluorescent protein from Hydnophora rigida possesses green emission. Biochemical and Biophysical Research Communications. 448: 33-8. PMID 24747076 DOI: 10.1016/J.Bbrc.2014.04.042  0.479
2014 Bajaj JS, Heuman DM, Hylemon PB, Sanyal AJ, Puri P, Sterling RK, Luketic V, Stravitz RT, Siddiqui MS, Fuchs M, Thacker LR, Wade JB, Daita K, Sistrun S, White MB, ... ... Sikaroodi M, et al. Randomised clinical trial: Lactobacillus GG modulates gut microbiome, metabolome and endotoxemia in patients with cirrhosis. Alimentary Pharmacology & Therapeutics. 39: 1113-25. PMID 24628464 DOI: 10.1111/Apt.12695  0.528
2014 Mukherjee PK, Chandra J, Retuerto M, Sikaroodi M, Brown RE, Jurevic R, Salata RA, Lederman MM, Gillevet PM, Ghannoum MA. Oral mycobiome analysis of HIV-infected patients: identification of Pichia as an antagonist of opportunistic fungi. Plos Pathogens. 10: e1003996. PMID 24626467 DOI: 10.1371/Journal.Ppat.1003996  0.541
2014 Bajaj JS, Heuman DM, Hylemon PB, Sanyal AJ, White MB, Monteith P, Noble NA, Unser AB, Daita K, Fisher AR, Sikaroodi M, Gillevet PM. Altered profile of human gut microbiome is associated with cirrhosis and its complications. Journal of Hepatology. 60: 940-7. PMID 24374295 DOI: 10.1016/J.Jhep.2013.12.019  0.771
2014 Lücking R, Lawrey JD, Gillevet PM, Sikaroodi M, Dal-Forno M, Berger SA. Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact? Journal of Molecular Evolution. 78: 148-62. PMID 24343640 DOI: 10.1007/S00239-013-9603-Y  0.523
2014 Bajaj J, Ahluwalia V, Sikaroodi M, Wade J, White M, Heuman D, Gilles H, Unser A, Hylemon P, Gillevet P. P499 ALTERED GUT MICROBIOME IS ASSOCIATED WITH NEURO-INFLAMMATION ON BRAIN MRI IN CIRRHOSIS: IMPLICATIONS FOR THE GUT–LIVER–BRAIN AXIS Journal of Hepatology. 60: S235-S236. DOI: 10.1016/S0168-8278(14)60661-9  0.531
2014 Bajaj J, Heuman D, Hylemon P, Sanyal A, Sterling R, Stravitz R, Puri P, Sikaroodi M, Thacker L, Wade J, Gillevet P. P456 SYSTEMS BIOLOGY ANALYSIS OF PROBIOTIC LACTOBACILLUS GG IN CIRRHOTIC PATIENTS WITH MINIMAL HEPATIC ENCEPHALOPATHY: A RANDOMIZED DOUBLE-BLIND, PLACEBO-CONTROLLED TRIAL Journal of Hepatology. 60: S221. DOI: 10.1016/S0168-8278(14)60618-8  0.513
2014 Bajaj J, Heuman D, Hylemon P, Sikaroodi M, Ridlon J, Pandak W, Schubert M, Fuchs M, White M, Daita K, Gillevet P. P335 DYSFUNCTIONAL GUT MICROBIOTA IN ILEO-COLONIC MUCOSA AND STOOL IN ALCOHOLIC CIRRHOSIS IS ASSOCIATED WITH ENDOTOXEMIA: IMPLICATIONS FOR BACTERIAL TRANSLOCATION Journal of Hepatology. 60: S178-S179. DOI: 10.1016/S0168-8278(14)60497-9  0.568
2014 Mirshahi S, Puri P, Pacana T, Daita K, Patel V, Min H, Sikaroodi M, Gillevet P, Sanyal A. P297 VITAMIN E ALTERS INTESTINAL MICROBIOME THROUGH DIFFERENTIAL CHANGES IN MUCOSAL AND FECAL MICROBIOTA IN MOUSE MODEL OF NONALCOHOLIC FATTY LIVER DISEASE (NALFD) Journal of Hepatology. 60: S164. DOI: 10.1016/S0168-8278(14)60459-1  0.565
2013 Couch RD, Navarro K, Sikaroodi M, Gillevet P, Forsyth CB, Mutlu E, Engen PA, Keshavarzian A. The approach to sample acquisition and its impact on the derived human fecal microbiome and VOC metabolome. Plos One. 8: e81163. PMID 24260553 DOI: 10.1371/Journal.Pone.0081163  0.532
2013 Dal-Forno M, Lawrey JD, Sikaroodi M, Bhattarai S, Gillevet PM, Sulzbacher M, Lücking R. Starting from scratch: Evolution of the lichen thallus in the basidiolichen Dictyonema (Agaricales: Hygrophoraceae). Fungal Biology. 117: 584-98. PMID 24012299 DOI: 10.1016/J.Funbio.2013.05.006  0.735
2013 Bajaj JS, Heuman DM, Sanyal AJ, Hylemon PB, Sterling RK, Stravitz RT, Fuchs M, Ridlon JM, Daita K, Monteith P, Noble NA, White MB, Fisher A, Sikaroodi M, Rangwala H, et al. Modulation of the metabiome by rifaximin in patients with cirrhosis and minimal hepatic encephalopathy. Plos One. 8: e60042. PMID 23565181 DOI: 10.1371/Journal.Pone.0060042  0.759
2013 Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, Greenwood R, Sikaroodi M, Lam V, Crotty P, Bailey J, Myers RP, Rioux KP. Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. 11: 868-75.e1-3. PMID 23454028 DOI: 10.1016/J.Cgh.2013.02.015  0.586
2013 Kakiyama G, Pandak WM, Gillevet PM, Hylemon PB, Heuman DM, Daita K, Takei H, Muto A, Nittono H, Ridlon JM, White MB, Noble NA, Monteith P, Fuchs M, Thacker LR, ... Sikaroodi M, et al. Modulation of the fecal bile acid profile by gut microbiota in cirrhosis. Journal of Hepatology. 58: 949-55. PMID 23333527 DOI: 10.1016/J.Jhep.2013.01.003  0.554
2013 Hamdan LJ, Coffin RB, Sikaroodi M, Greinert J, Treude T, Gillevet PM. Ocean currents shape the microbiome of Arctic marine sediments. The Isme Journal. 7: 685-96. PMID 23190727 DOI: 10.1038/Ismej.2012.143  0.526
2013 Ghannoum MA, Mukherjee PK, Jurevic RJ, Retuerto M, Brown RE, Sikaroodi M, Webster-Cyriaque J, Gillevet PM. Metabolomics reveals differential levels of oral metabolites in HIV-infected patients: toward novel diagnostic targets. Omics : a Journal of Integrative Biology. 17: 5-15. PMID 21751871 DOI: 10.1089/Omi.2011.0035  0.512
2013 Bajaj J, Heuman D, Sanyal A, Hylemon P, Sterling R, Stravitz R, Fuchs M, Ridlon J, Daita K, Monteith P, White M, Noble N, Fisher A, Sikaroodi M, Rangwala H, et al. 192 RIFAXIMIN IMPROVES COGNITION AND ENDOTOXEMIA IN MINIMAL HEPATIC ENCEPHALOPATHY BY SHIFTING GUT MICROBIAL FUNCTIONALITY WITHOUT ALTERING THEIR ABUNDANCE Journal of Hepatology. 58: S84-S85. DOI: 10.1016/S0168-8278(13)60194-4  0.753
2013 Cook GM, Rothenberger JP, Sikaroodi M, Gillevet PM, Peters EC, Jonas RB. A comparison of culture-dependent and culture-independent techniques used to characterize bacterial communities on healthy and white plague-diseased corals of the Montastraea annularis species complex Coral Reefs. 32: 375-388. DOI: 10.1007/s00338-012-0989-6  0.546
2012 Sikaroodi M, Gillevet PM. Quality control in multi-tag pyrosequencing of microbial communities. Biotechniques. 53: 381-3. PMID 23227989 DOI: 10.2144/000113967  0.553
2012 Bajaj JS, Hylemon PB, Ridlon JM, Heuman DM, Daita K, White MB, Monteith P, Noble NA, Sikaroodi M, Gillevet PM. Colonic mucosal microbiome differs from stool microbiome in cirrhosis and hepatic encephalopathy and is linked to cognition and inflammation. American Journal of Physiology. Gastrointestinal and Liver Physiology. 303: G675-85. PMID 22821944 DOI: 10.1152/Ajpgi.00152.2012  0.582
2012 Bajaj JS, Gillevet PM, Patel NR, Ahluwalia V, Ridlon JM, Kettenmann B, Schubert CM, Sikaroodi M, Heuman DM, Crossey MM, Bell DE, Hylemon PB, Fatouros PP, Taylor-Robinson SD. A longitudinal systems biology analysis of lactulose withdrawal in hepatic encephalopathy. Metabolic Brain Disease. 27: 205-15. PMID 22527995 DOI: 10.1007/S11011-012-9303-0  0.556
2012 Mutlu EA, Gillevet PM, Rangwala H, Sikaroodi M, Naqvi A, Engen PA, Kwasny M, Lau CK, Keshavarzian A. Colonic microbiome is altered in alcoholism. American Journal of Physiology. Gastrointestinal and Liver Physiology. 302: G966-78. PMID 22241860 DOI: 10.1152/Ajpgi.00380.2011  0.775
2012 Bajaj JS, Ridlon JM, Hylemon PB, Thacker LR, Heuman DM, Smith S, Sikaroodi M, Gillevet PM. Linkage of gut microbiome with cognition in hepatic encephalopathy. American Journal of Physiology. Gastrointestinal and Liver Physiology. 302: G168-75. PMID 21940902 DOI: 10.1152/Ajpgi.00190.2011  0.556
2012 Meres NJ, Ajuzie CC, Sikaroodi M, Vemulapalli M, Shields JD, Gillevet PM. Dysbiosis in epizootic shell disease of the American lobster (Homarus americanus) Journal of Shellfish Research. 31: 463-472. DOI: 10.2983/035.031.0206  0.75
2012 Hamdan LJ, Sikaroodi M, Gillevet PM. Bacterial Community Composition and Diversity in Methane Charged Sediments Revealed by Multitag Pyrosequencing Geomicrobiology Journal. 29: 340-351. DOI: 10.1080/01490451.2011.559305  0.554
2012 Lawrey JD, Diederich P, Nelsen MP, Freebury C, Van Den Broeck D, Sikaroodi M, Ertz D. Phylogenetic placement of lichenicolous Phoma species in the Phaeosphaeriaceae (Pleosporales, Dothideomycetes) Fungal Diversity. 55: 195-213. DOI: 10.1007/S13225-012-0166-9  0.307
2012 Diederich P, Lawrey JD, Sikaroodi M, Van Den Boom PPG, Ertz D. Briancoppinsia, a new coelomycetous genus of Arthoniaceae (Arthoniales) for the lichenicolous Phoma cytospora, with a key to this and similar taxa Fungal Diversity. 52: 1-12. DOI: 10.1007/S13225-011-0105-1  0.312
2011 Hamdan LJ, Gillevet PM, Pohlman JW, Sikaroodi M, Greinert J, Coffin RB. Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand. Fems Microbiology Ecology. 77: 518-32. PMID 21595727 DOI: 10.1111/J.1574-6941.2011.01133.X  0.543
2011 Lawrey JD, Diederich P, Nelsen MP, Sikaroodi M, Gillevet PM, Brand AM, van den Boom P. The obligately lichenicolous genus Lichenoconium represents a novel lineage in the Dothideomycetes. Fungal Biology. 115: 176-87. PMID 21315315 DOI: 10.1016/J.Funbio.2010.12.002  0.563
2011 Diederich P, Lawrey JD, Sikaroodi M, Gillevet PM. A new lichenicolous teleomorph is related to plant pathogens in Laetisaria and Limonomyces (Basidiomycota, Corticiales). Mycologia. 103: 525-33. PMID 21193603 DOI: 10.3852/10-255  0.509
2011 Wisittipanit N, Rangwala H, Sikaroodi M, Keshavarzian A, Mutlu EA, Gillevet P. Profiling microbial communities using SSU rRNA sequence and LH-PCR data 3rd International Conference On Bioinformatics and Computational Biology 2011, Bicob 2011. 190-195.  0.801
2010 Gillevet P, Sikaroodi M, Keshavarzian A, Mutlu EA. Quantitative assessment of the human gut microbiome using multitag pyrosequencing. Chemistry & Biodiversity. 7: 1065-75. PMID 20491064 DOI: 10.1002/Cbdv.200900322  0.589
2010 Bokhari H, Smith C, Veerendra K, Sivaraman J, Sikaroodi M, Gillevet P. Novel fluorescent protein from Hydnophora rigida possess cyano emission Biochemical and Biophysical Research Communications. 396: 631-636. PMID 20435020 DOI: 10.1016/j.bbrc.2010.04.136  0.419
2010 Spear GT, Gilbert D, Sikaroodi M, Doyle L, Green L, Gillevet PM, Landay AL, Veazey RS. Identification of rhesus macaque genital microbiota by 16S pyrosequencing shows similarities to human bacterial vaginosis: implications for use as an animal model for HIV vaginal infection. Aids Research and Human Retroviruses. 26: 193-200. PMID 20156101 DOI: 10.1089/Aid.2009.0166  0.567
2010 Ghannoum MA, Jurevic RJ, Mukherjee PK, Cui F, Sikaroodi M, Naqvi A, Gillevet PM. Characterization of the oral fungal microbiome (mycobiome) in healthy individuals. Plos Pathogens. 6: e1000713. PMID 20072605 DOI: 10.1371/Journal.Ppat.1000713  0.785
2010 Bajaj J, McPhail M, Heuman D, Bell D, Gillevet P, Sikaroodi M, Sanyal A, Sharif M, Ridlon J, Hylemon P, Taylor-Robinson S. 151 URINARY MAGNETIC RESONANCE SPECTROSCOPY IN PATIENTS WITH HEPATIC ENCEPHALOPATHY: CITRATE CORRELATES WITH ASYMMETRIC DIMETHYLARGININE AND GUT MICROBIAL SPECIES AND CAN PREDICT RECURRENCE AFTER LACTULOSE DISCONTINUATION Journal of Hepatology. 52: S67. DOI: 10.1016/S0168-8278(10)60153-5  0.551
2010 Wisittipanit N, Keshavarzian A, Rangwala H, Gillevet P, Sikaroodi M, Mutlu EA. SVM-based classification and feature selection methods for the analysis of inflammatory bowel disease microbiome data Proceedings of the Acm Sigkdd International Conference On Knowledge Discovery and Data Mining. 85-92.  0.793
2009 Lücking R, Lawrey JD, Sikaroodi M, Gillevet PM, Chaves JL, Sipman HJ, Bungartz F. Do lichens domesticate photobionts like farmers domesticate crops? Evidence from a previously unrecognized lineage of filamentous cyanobacteria. American Journal of Botany. 96: 1409-18. PMID 21628288 DOI: 10.3732/Ajb.0800258  0.553
2009 Lawrey JD, Lücking R, Sipman HJ, Chaves JL, Redhead SA, Bungartz F, Sikaroodi M, Gillevet PM. High concentration of basidiolichens in a single family of agaricoid mushrooms (Basidiomycota: Agaricales: Hygrophoraceae). Mycological Research. 113: 1154-71. PMID 19646529 DOI: 10.1016/J.Mycres.2009.07.016  0.552
2009 Mutlu E, Keshavarzian A, Engen P, Forsyth CB, Sikaroodi M, Gillevet P. Intestinal dysbiosis: a possible mechanism of alcohol-induced endotoxemia and alcoholic steatohepatitis in rats. Alcoholism, Clinical and Experimental Research. 33: 1836-46. PMID 19645728 DOI: 10.1111/J.1530-0277.2009.01022.X  0.543
2009 Bisson IA, Marra PP, Burtt EH, Sikaroodi M, Gillevet PM. Variation in plumage microbiota depends on season and migration. Microbial Ecology. 58: 212-20. PMID 19212698 DOI: 10.1007/S00248-009-9490-3  0.568
2009 Gillevet PM, Sikaroodi M, Torzilli AP. Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing Fungal Ecology. 2: 160-167. DOI: 10.1016/J.Funeco.2009.04.001  0.56
2009 Ahn C, Gillevet PM, Sikaroodi M, Wolf KL. An assessment of soil bacterial community structure and physicochemistry in two microtopographic locations of a palustrine forested wetland Wetlands Ecology and Management. 17: 397-407. DOI: 10.1007/S11273-008-9116-4  0.527
2009 Litchfield CD, Oren A, Irby A, Sikaroodi M, Gillevet PM. Temporal and salinity impacts on the microbial diversity at the Eilat, Israel solar salt plant Global Nest Journal. 11: 86-90.  0.515
2008 Lawrey JD, Diederich P, Sikaroodi M, Gillevet PM. Remarkable nutritional diversity of basidiomycetes in the Corticiales, including a new foliicolous species of Marchandiomyces (anamorphic Basidiomycota, Corticiaceae) from Australia. American Journal of Botany. 95: 816-23. PMID 21632407 DOI: 10.3732/Ajb.0800078  0.565
2008 Ertz D, Lawrey JD, Sikaroodi M, Gillevet PM, Fischer E, Killmann D, Sérusiaux E. A new lineage of lichenized basidiomycetes inferred from a two-gene phylogeny: The Lepidostromataceae with three species from the tropics. American Journal of Botany. 95: 1548-56. PMID 21628162 DOI: 10.3732/Ajb.0800232  0.554
2008 Pesenti PT, Sikaroodi M, Gillevet PM, Sánchez-Porro C, Ventosa A, Litchfield CD. Halorubrum californiense sp. nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA. International Journal of Systematic and Evolutionary Microbiology. 58: 2710-5. PMID 19060045 DOI: 10.1099/Ijs.0.2008/002410-0  0.497
2008 Spear GT, Sikaroodi M, Zariffard MR, Landay AL, French AL, Gillevet PM. Comparison of the diversity of the vaginal microbiota in HIV-infected and HIV-uninfected women with or without bacterial vaginosis. The Journal of Infectious Diseases. 198: 1131-40. PMID 18717638 DOI: 10.1086/591942  0.496
2008 Hamdan LJ, Gillevet PM, Sikaroodi M, Pohlman JW, Plummer RE, Coffin RB. Geomicrobial characterization of gas hydrate-bearing sediments along the mid-Chilean margin. Fems Microbiology Ecology. 65: 15-30. PMID 18522645 DOI: 10.1111/J.1574-6941.2008.00507.X  0.518
2008 Mutlu EA, Glover SC, Gillevet PM, Llor X, Quander CR, Sikaroodi M, Engen P, Bracamonte S, Keshavarzian A. S2007 Bacterial Microbiota Fingerprints Are Altered in Colon Cancer Gastroenterology. 134: A-296. DOI: 10.1016/S0016-5085(08)61377-3  0.535
2007 Komanduri S, Gillevet PM, Sikaroodi M, Mutlu E, Keshavarzian A. Dysbiosis in pouchitis: evidence of unique microfloral patterns in pouch inflammation. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. 5: 352-60. PMID 17368235 DOI: 10.1016/J.Cgh.2007.01.001  0.583
2007 Bisson IA, Marra PP, Burtt EH, Sikaroodi M, Gillevet PM. A molecular comparison of plumage and soil bacteria across biogeographic, ecological, and taxonomic scales. Microbial Ecology. 54: 65-81. PMID 17334855 DOI: 10.1007/s00248-006-9173-2  0.513
2007 Lawrey JD, Binder M, Diederich P, Molina MC, Sikaroodi M, Ertz D. Phylogenetic diversity of lichen-associated homobasidiomycetes. Molecular Phylogenetics and Evolution. 44: 778-89. PMID 17291787 DOI: 10.1016/J.Ympev.2006.12.023  0.331
2007 Ahn C, Gillevet PM, Sikaroodi M. Molecular characterization of microbial communities in treatment microcosm wetlands as influenced by macrophytes and phosphorus loading Ecological Indicators. 7: 852-863. DOI: 10.1016/J.Ecolind.2006.10.004  0.497
2006 Torzilli AP, Sikaroodi M, Chalkley D, Gillevet PM. A comparison of fungal communities from four salt marsh plants using automated ribosomal intergenic spacer analysis (ARISA). Mycologia. 98: 690-8. PMID 17256573 DOI: 10.3852/Mycologia.98.5.690  0.559
2006 Yang C, Mills D, Mathee K, Wang Y, Jayachandran K, Sikaroodi M, Gillevet P, Entry J, Narasimhan G. An eco-informatics tool for microbial community studies: supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. Journal of Microbiological Methods. 65: 49-62. PMID 16054254 DOI: 10.1016/J.Mimet.2005.06.012  0.538
2006 Mutlu EA, Gillevet P, Sikaroodi M, Komanduri S, Keshavarzian A. There Is a Shift of Luminal Flora to the Mucosal Surface in Inflammatory Bowel Disease American Journal of Gastroenterology. 101: S467-S468. DOI: 10.14309/00000434-200609001-01202  0.535
2006 Mutlu EA, Gillevet P, Sikaroodi M, Kwasny M, Keshavarzian A. Bacterial Diversity Remains High in Inflammatory Bowel Disease American Journal of Gastroenterology. 101: S467. DOI: 10.14309/00000434-200609001-01201  0.569
2006 Litchfield CD, Sikaroodi M, Gillevet PM. 21 Characterization of Natural Communities of Halophilic Microorganisms Methods in Microbiology. 35: 513-533. DOI: 10.1016/S0580-9517(08)70024-2  0.543
2005 Drgon T, Saito K, Gillevet PM, Sikaroodi M, Whitaker B, Krupatkina DN, Argemi F, Vasta GR. Characterization of ichthyocidal activity of Pfiesteria piscicida: dependence on the dinospore cell density. Applied and Environmental Microbiology. 71: 519-29. PMID 15640229 DOI: 10.1128/Aem.71.1.519-529.2005  0.538
2004 Lydell C, Dowell L, Sikaroodi M, Gillevet P, Emerson D. A population survey of members of the phylum Bacteroidetes isolated from salt marsh sediments along the east coast of the United States Microbial Ecology. 48: 263-273. PMID 15107955 DOI: 10.1007/S00248-003-1068-X  0.532
2001 Sikaroodi M, Lawrey JD, Hawksworth DL, DePriest PT. The phylogenetic position of selected lichenicolous fungi: Hobsonia, Illosporium, and Marchandiomyces Mycological Research. 105: 453-460. DOI: 10.1017/S0953756201003768  0.306
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