| Year |
Citation |
Score |
| 2023 |
Barrett A, Brown JA, Smith MA, Woodward A, Vavalle JP, Kheradvar A, Griffith BE, Fogelson AL. A model of fluid-structure and biochemical interactions for applications to subclinical leaflet thrombosis. International Journal For Numerical Methods in Biomedical Engineering. e3700. PMID 37016277 DOI: 10.1002/cnm.3700 |
0.569 |
|
| 2021 |
Du J, Lewis OL, Keener JP, Fogelson AL. Modeling and Simulation of the Ion-Binding-Mediated Swelling Dynamics of Mucin-like Polyelectrolyte Gels. Gels (Basel, Switzerland). 7. PMID 34940304 DOI: 10.3390/gels7040244 |
0.692 |
|
| 2021 |
Barrett A, Fogelson AL, Griffith BE. A Hybrid Semi-Lagrangian Cut Cell Method for Advection-Diffusion Problems with Robin Boundary Conditions in Moving Domains. Journal of Computational Physics. 449. PMID 34898720 DOI: 10.1016/j.jcp.2021.110805 |
0.605 |
|
| 2020 |
Rahman S, Fogelson A, Hlady V. Effects of elapsed time on downstream platelet adhesion following transient exposure to elevated upstream shear forces. Colloids and Surfaces. B, Biointerfaces. 193: 111118. PMID 32450503 DOI: 10.1016/J.Colsurfb.2020.111118 |
0.32 |
|
| 2020 |
Nelson AC, Keener JP, Fogelson AL. Kinetic model of two-monomer polymerization. Physical Review. E. 101: 022501. PMID 32168560 DOI: 10.1103/Physreve.101.022501 |
0.323 |
|
| 2019 |
Link KG, Stobb MT, Sorrells MG, Bortot M, Ruegg K, Manco-Johnson MJ, Di Paola JA, Sindi SS, Fogelson AL, Leiderman K, Neeves KB. A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A. Journal of Thrombosis and Haemostasis : Jth. PMID 31562694 DOI: 10.1111/Jth.14653 |
0.307 |
|
| 2018 |
Shankar V, Fogelson AL. Hyperviscosity-Based Stabilization for Radial Basis Function-Finite Difference (RBF-FD) Discretizations of Advection-Diffusion Equations. Journal of Computational Physics. 372: 616-639. PMID 31011233 DOI: 10.1016/J.Jcp.2018.06.036 |
0.433 |
|
| 2018 |
Lewis OL, Keener JP, Fogelson AL. Electrodiffusion-Mediated Swelling of a Two-Phase Gel Model of Gastric Mucus. Gels (Basel, Switzerland). 4. PMID 30674852 DOI: 10.3390/Gels4030076 |
0.698 |
|
| 2018 |
Link KG, Stobb MT, Di Paola J, Neeves KB, Fogelson AL, Sindi SS, Leiderman K. A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow. Plos One. 13: e0200917. PMID 30048479 DOI: 10.1371/Journal.Pone.0200917 |
0.359 |
|
| 2018 |
Shankar V, Kirby RM, Fogelson AL. Robust Node Generation for Mesh-free Discretizations on Irregular Domains and Surfaces Siam Journal On Scientific Computing. 40: A2584-A2608. DOI: 10.1137/17M114090X |
0.3 |
|
| 2017 |
Lewis OL, Keener JP, Fogelson AL. A physics-based model for maintenance of the pH gradient in the gastric mucus layer. American Journal of Physiology. Gastrointestinal and Liver Physiology. ajpgi.00221.2017. PMID 28882824 DOI: 10.1152/Ajpgi.00221.2017 |
0.694 |
|
| 2017 |
Bannish BE, Chernysh IN, Keener JP, Fogelson AL, Weisel JW. Molecular and Physical Mechanisms of Fibrinolysis and Thrombolysis from Mathematical Modeling and Experiments. Scientific Reports. 7: 6914. PMID 28785035 DOI: 10.1038/S41598-017-06383-W |
0.758 |
|
| 2017 |
Schoeman RM, Rana K, Danes N, Lehmann M, Di Paola JA, Fogelson AL, Leiderman K, Neeves KB. A microfluidic model of hemostasis sensitive to platelet function and coagulation. Cellular and Molecular Bioengineering. 10: 3-15. PMID 28529666 DOI: 10.1007/S12195-016-0469-0 |
0.338 |
|
| 2017 |
Du J, Fogelson AL. A Two-phase mixture model of platelet aggregation. Mathematical Medicine and Biology : a Journal of the Ima. PMID 28339733 DOI: 10.1093/Imammb/Dqx001 |
0.364 |
|
| 2017 |
Walton BL, Lehmann M, Skorczewski T, Holle LA, Beckman JD, Cribb JA, Mooberry MJ, Wufsus AR, Cooley BC, Homeister JW, Pawlinski R, Falvo MR, Key NS, Fogelson AL, Neeves KB, et al. Elevated hematocrit enhances platelet accumulation following vascular injury. Blood. PMID 28251913 DOI: 10.1182/Blood-2016-10-746479 |
0.318 |
|
| 2016 |
Elizondo P, Fogelson AL. A Mathematical Model of Venous Thrombosis Initiation. Biophysical Journal. 111: 2722-2734. PMID 28002748 DOI: 10.1016/J.Bpj.2016.10.030 |
0.355 |
|
| 2016 |
Eichinger CD, Fogelson AL, Hlady V. Functional assay of antiplatelet drugs based on margination of platelets in flowing blood. Biointerphases. 11: 029805. PMID 27030476 DOI: 10.1116/1.4945305 |
0.31 |
|
| 2016 |
Shankar V, Wright GB, Kirby RM, Fogelson AL. A Radial Basis Function (RBF)-Finite Difference (FD) Method for Diffusion and Reaction-Diffusion Equations on Surfaces. Journal of Scientific Computing. 63: 745-768. PMID 25983388 DOI: 10.1007/S10915-014-9914-1 |
0.375 |
|
| 2016 |
Camacho V, Fogelson A, Keener J. Eulerian-lagrangian treatment of nondilute two-phase gels Siam Journal On Applied Mathematics. 76: 341-367. DOI: 10.1137/15M1023579 |
0.417 |
|
| 2016 |
Zhang Q, Fogelson A. MARS: An Analytic Framework of Interface Tracking via Mapping and Adjusting Regular Semialgebraic Sets Siam Journal On Numerical Analysis. 54: 530-560. DOI: 10.1137/140966812 |
0.325 |
|
| 2015 |
Fogelson AL, Keener JP. A Framework for Exploring the Post-gelation Behavior of Ziff and Stell's Polymerization Models. Siam Journal On Applied Mathematics. 75: 1346-1368. PMID 30774159 DOI: 10.1137/140983872 |
0.368 |
|
| 2015 |
Fogelson AL, Neeves KB. Fluid Mechanics of Blood Clot Formation. Annual Review of Fluid Mechanics. 47: 377-403. PMID 26236058 DOI: 10.1146/Annurev-Fluid-010814-014513 |
0.369 |
|
| 2015 |
Shankar V, Wright GB, Kirby RM, Fogelson AL. Augmenting the immersed boundary method with Radial Basis Functions (RBFs) for the modeling of platelets in hemodynamic flows International Journal For Numerical Methods in Fluids. 79: 536-557. DOI: 10.1002/Fld.4061 |
0.436 |
|
| 2014 |
Du J, Guy RD, Fogelson AL. An Immersed Boundary Method for Two-fluid Mixtures. Journal of Computational Physics. 262: 231-243. PMID 25013235 DOI: 10.1016/J.Jcp.2014.01.008 |
0.586 |
|
| 2014 |
Leiderman K, Fogelson A. An overview of mathematical modeling of thrombus formation under flow. Thrombosis Research. 133: S12-4. PMID 24759131 DOI: 10.1016/J.Thromres.2014.03.005 |
0.382 |
|
| 2014 |
Bannish BE, Keener JP, Woodbury M, Weisel JW, Fogelson AL. Modelling fibrinolysis: 1D continuum models. Mathematical Medicine and Biology : a Journal of the Ima. 31: 45-64. PMID 23220467 DOI: 10.1093/Imammb/Dqs030 |
0.763 |
|
| 2014 |
Bannish BE, Keener JP, Fogelson AL. Modelling fibrinolysis: a 3D stochastic multiscale model. Mathematical Medicine and Biology : a Journal of the Ima. 31: 17-44. PMID 23220403 DOI: 10.1093/Imammb/Dqs029 |
0.759 |
|
| 2014 |
Zhang Q, Fogelson A. Fourth-order interface tracking in two dimensions via an improved polygonal area mapping method Siam Journal On Scientific Computing. 36: A2369-A2340. DOI: 10.1137/140951886 |
0.385 |
|
| 2014 |
Du J, Guy RD, Fogelson AL. An immersed boundary method for two-fluid mixtures Journal of Computational Physics. 262: 231-243. DOI: 10.1016/j.jcp.2014.01.008 |
0.533 |
|
| 2014 |
Shankar V, Wright GB, Fogelson AL, Kirby RM. A radial basis function (RBF) finite difference method for the simulation of reaction-diffusion equations on stationary platelets within the augmented forcing method International Journal For Numerical Methods in Fluids. 75: 1-22. DOI: 10.1002/Fld.3880 |
0.44 |
|
| 2013 |
Onasoga-Jarvis AA, Leiderman K, Fogelson AL, Wang M, Manco-Johnson MJ, Di Paola JA, Neeves KB. The effect of factor VIII deficiencies and replacement and bypass therapies on thrombus formation under venous flow conditions in microfluidic and computational models. Plos One. 8: e78732. PMID 24236042 DOI: 10.1371/Journal.Pone.0078732 |
0.332 |
|
| 2013 |
Skorczewski T, Erickson LC, Fogelson AL. Platelet motion near a vessel wall or thrombus surface in two-dimensional whole blood simulations. Biophysical Journal. 104: 1764-72. PMID 23601323 DOI: 10.1016/J.Bpj.2013.01.061 |
0.603 |
|
| 2013 |
Shankar V, Wright GB, Fogelson AL, Kirby RM. A study of different modeling choices for simulating platelets within the immersed boundary method. Applied Numerical Mathematics : Transactions of Imacs. 63: 58-77. PMID 23585704 DOI: 10.1016/J.Apnum.2012.09.006 |
0.439 |
|
| 2013 |
Sircar S, Keener JP, Fogelson AL. The effect of divalent vs. monovalent ions on the swelling of Mucin-like polyelectrolyte gels: Governing equations and equilibrium analysis Journal of Chemical Physics. 138. PMID 23298059 DOI: 10.1063/1.4772405 |
0.31 |
|
| 2013 |
Leiderman K, Fogelson AL. The influence of hindered transport on the development of platelet thrombi under flow. Bulletin of Mathematical Biology. 75: 1255-83. PMID 23097125 DOI: 10.1007/S11538-012-9784-3 |
0.344 |
|
| 2013 |
Du J, Guy RD, Fogelson AL, Wright GB, Keener JP. An interface-capturing regularization method for solving the equations for two-fluid mixtures Communications in Computational Physics. 14: 1322-1346. DOI: 10.4208/Cicp.180512.210313A |
0.616 |
|
| 2012 |
Du J, Keener JP, Guy RD, Fogelson AL. Low-Reynolds-number swimming in viscous two-phase fluids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 036304. PMID 22587177 DOI: 10.1103/Physreve.85.036304 |
0.556 |
|
| 2012 |
Fogelson AL, Hussain YH, Leiderman K. Blood clot formation under flow: the importance of factor XI depends strongly on platelet count. Biophysical Journal. 102: 10-8. PMID 22225793 DOI: 10.1016/J.Bpj.2011.10.048 |
0.347 |
|
| 2012 |
Yao L, Fogelson AL. Simulations of chemical transport and reaction in a suspension of cells I: An augmented forcing point method for the stationary case International Journal For Numerical Methods in Fluids. 69: 1736-1752. DOI: 10.1002/Fld.2661 |
0.366 |
|
| 2011 |
Leiderman K, Fogelson AL. Grow with the flow: a spatial-temporal model of platelet deposition and blood coagulation under flow. Mathematical Medicine and Biology : a Journal of the Ima. 28: 47-84. PMID 20439306 DOI: 10.1093/Imammb/Dqq005 |
0.347 |
|
| 2011 |
Keener JP, Sircar S, Fogelson AL. Kinetics of swelling gels Siam Journal On Applied Mathematics. 71: 854-875. DOI: 10.1137/100796984 |
0.349 |
|
| 2011 |
Crowl L, Fogelson AL. Analysis of mechanisms for platelet near-wall excess under arterial blood flow conditions Journal of Fluid Mechanics. 676: 348-375. DOI: 10.1017/Jfm.2011.54 |
0.363 |
|
| 2011 |
Wright GB, Guy RD, Du J, Fogelson AL. A high-resolution finite-difference method for simulating two-fluid, viscoelastic gel dynamics Journal of Non-Newtonian Fluid Mechanics. 166: 1137-1157. DOI: 10.1016/J.Jnnfm.2011.07.002 |
0.628 |
|
| 2011 |
Du J, Fogelson AL. A Cartesian grid method for two-phase gel dynamics on an irregular domain International Journal For Numerical Methods in Fluids. 67: 1799-1817. DOI: 10.1002/Fld.2445 |
0.409 |
|
| 2010 |
Crowl LM, Fogelson AL. Computational model of whole blood exhibiting lateral platelet motion induced by red blood cells. International Journal For Numerical Methods in Biomedical Engineering. 26: 471-487. PMID 21152372 DOI: 10.1002/Cnm.1274 |
0.364 |
|
| 2009 |
Du J, Fogelson AL, Wright GB. A parallel computational method for simulating two-phase gel dynamics on a staggered grid International Journal For Numerical Methods in Fluids. 60: 633-649. DOI: 10.1002/Fld.1907 |
0.403 |
|
| 2008 |
Leiderman KM, Miller LA, Fogelson AL. The effects of spatial inhomogeneities on flow through the endothelial surface layer. Journal of Theoretical Biology. 252: 313-25. PMID 18358493 DOI: 10.1016/J.Jtbi.2008.01.013 |
0.32 |
|
| 2008 |
Newren EP, Fogelson AL, Guy RD, Kirby RM. A comparison of implicit solvers for the immersed boundary equations Computer Methods in Applied Mechanics and Engineering. 197: 2290-2304. DOI: 10.1016/J.Cma.2007.11.030 |
0.734 |
|
| 2008 |
Guy RD, Fogelson AL. A wave propagation algorithm for viscoelastic fluids with spatially and temporally varying properties Computer Methods in Applied Mechanics and Engineering. 197: 2250-2264. DOI: 10.1016/J.Cma.2007.11.022 |
0.608 |
|
| 2008 |
Fogelson AL, Guy RD. Immersed-boundary-type models of intravascular platelet aggregation Computer Methods in Applied Mechanics and Engineering. 197: 2087-2104. DOI: 10.1016/J.Cma.2007.06.030 |
0.609 |
|
| 2007 |
Guy RD, Fogelson AL, Keener JP. Fibrin gel formation in a shear flow. Mathematical Medicine and Biology : a Journal of the Ima. 24: 111-30. PMID 17018571 DOI: 10.1093/Imammb/Dql022 |
0.584 |
|
| 2007 |
Wright GB, Guy RD, Fogelson AL. An efficient and robust method for simulating two-phase gel dynamics Siam Journal On Scientific Computing. 30: 2535-2565. DOI: 10.1137/070695927 |
0.635 |
|
| 2007 |
Newren EP, Fogelson AL, Guy RD, Kirby RM. Unconditionally stable discretizations of the immersed boundary equations Journal of Computational Physics. 222: 702-719. DOI: 10.1016/J.Jcp.2006.08.004 |
0.734 |
|
| 2006 |
Fogelson A, Guy R. Computational modeling of arterial platelet thrombosis in stenotic vessels Journal of Biomechanics. 39: S296. DOI: 10.1016/S0021-9290(06)84148-5 |
0.554 |
|
| 2005 |
Fogelson AL, Tania N. Coagulation under flow: the influence of flow-mediated transport on the initiation and inhibition of coagulation. Pathophysiology of Haemostasis and Thrombosis. 34: 91-108. PMID 16432311 DOI: 10.1159/000089930 |
0.332 |
|
| 2005 |
Guy RD, Fogelson AL. Stability of approximate projection methods on cell-centered grids Journal of Computational Physics. 203: 517-538. DOI: 10.1016/J.Jcp.2004.09.005 |
0.592 |
|
| 2004 |
Fogelson AL, Guy RD. Platelet-wall interactions in continuum models of platelet thrombosis: formulation and numerical solution. Mathematical Medicine and Biology : a Journal of the Ima. 21: 293-334. PMID 15567887 DOI: 10.1093/Imammb/21.4.293 |
0.621 |
|
| 2003 |
Yi CS, Fogelson AL, Keener JP, Peskin CS. A mathematical study of volume shifts and ionic concentration changes during ischemia and hypoxia. Journal of Theoretical Biology. 220: 83-106. PMID 12453453 DOI: 10.1006/Jtbi.2003.3154 |
0.691 |
|
| 2002 |
Guy RD, Fogelson AL. Probabilistic modeling of platelet aggregation: effects of activation time and receptor occupancy. Journal of Theoretical Biology. 219: 33-53. PMID 12392973 DOI: 10.1016/S0022-5193(02)93106-1 |
0.582 |
|
| 2001 |
Kuharsky AL, Fogelson AL. Surface-mediated control of blood coagulation: The role of binding site densities and platelet deposition Biophysical Journal. 80: 1050-1074. PMID 11222273 DOI: 10.1016/S0006-3495(01)76085-7 |
0.37 |
|
| 2001 |
Fogelson AL, Keener JP. Immersed interface methods for Neumann and related problems in two and three dimensions Siam Journal On Scientific Computing. 22: 1630-1654. DOI: 10.1137/S1064827597327541 |
0.39 |
|
| 1999 |
Wang NT, Fogelson AL. Computational Methods for Continuum Models of Platelet Aggregation Journal of Computational Physics. 151: 649-675. DOI: 10.1006/Jcph.1999.6212 |
0.439 |
|
| 1996 |
Fogelson AL, Wang NT. Platelet dense-granule centralization and the persistence of ADP secretion American Journal of Physiology - Heart and Circulatory Physiology. 270: H1131-H1140. PMID 8780211 DOI: 10.1152/Ajpheart.1996.270.3.H1131 |
0.311 |
|
| 1996 |
Dillon R, Fauci L, Fogelson A, Gaver D. Modeling biofilm processes using the immersed boundary method Journal of Computational Physics. 129: 57-73. DOI: 10.1006/Jcph.1996.0233 |
0.411 |
|
| 1993 |
Moll VH, Fogelson AL. Activation waves in a model of platelet aggregation: existence of solutions and stability of travelling fronts Journal of Mathematical Biology. 31: 675-701. PMID 8245730 DOI: 10.1007/Bf00160419 |
0.376 |
|
| 1993 |
Fogelson AL, Dillon RH. Optimal Smoothing in Function-Transport Particle Methods for Diffusion Problems Journal of Computational Physics. 109: 155-163. DOI: 10.1006/Jcph.1993.1208 |
0.309 |
|
| 1993 |
Fauci LJ, Fogelson AL. Truncated newton methods and the modeling of complex immersed elastic structures Communications On Pure and Applied Mathematics. 46: 787-818. DOI: 10.1002/Cpa.3160460602 |
0.404 |
|
| 1992 |
Schlick T, Fogelson A. Algorithm 702: TNPACK–a truncated Newton minimization package for large-scale problems Acm Transactions On Mathematical Software (Toms). 18: 141. DOI: 10.1145/146847.146921 |
0.548 |
|
| 1992 |
Schlick T, Fogelson A. TNPACK—a truncated Newton minimization package for large-scale problems Acm Transactions On Mathematical Software (Toms). 18: 71-111. DOI: 10.1145/128745.150975 |
0.489 |
|
| 1992 |
Schlick T, Fogelson A. TNPACK—A truncated Newton minimization package for large-scale problems Acm Transactions On Mathematical Software (Toms). 18: 46-70. DOI: 10.1145/128745.150973 |
0.559 |
|
| 1992 |
Fogelson AL. Continuum models of platelet aggregation: formulation and mechanical properties Siam Journal On Applied Mathematics. 52: 1089-1110. DOI: 10.1137/0152064 |
0.349 |
|
| 1992 |
Fogelson AL. Particle-method solution of two-dimensional convection-diffusion equations Journal of Computational Physics. 100: 1-16. DOI: 10.1016/0021-9991(92)90305-I |
0.406 |
|
| 1992 |
Fogelson AL. Abstract of papers to appear in future issuesParticle-method solution of two-dimensional convection-diffusion equations Journal of Computational Physics. 99. DOI: 10.1016/0021-9991(92)90300-N |
0.365 |
|
| 1988 |
Fogelson AL, Peskin CS. A fast numerical method for solving the three-dimensional stokes' equations in the presence of suspended particles Journal of Computational Physics. 79: 50-69. DOI: 10.1016/0021-9991(88)90003-4 |
0.592 |
|
| 1986 |
Fogelson AL, Peskin CS. Numerical solution of the three-dimensional Stokes' equations in the presence of suspended particles . |
0.542 |
|
| 1984 |
Fogelson AL. A mathematical model and numerical method for studying platelet adhesion and aggregation during blood clotting Journal of Computational Physics. 56: 111-134. DOI: 10.1016/0021-9991(84)90086-X |
0.412 |
|
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