| Year |
Citation |
Score |
| 2020 |
Butler TJ, Estep KN, Sommers JA, Maul RW, Moore AZ, Bandinelli S, Cucca F, Tuke MA, Wood AR, Bharti SK, Bogenhagen DF, Yakubovskaya E, Garcia-Diaz M, Guilliam TA, Byrd AK, et al. Mitochondrial genetic variation is enriched in G-quadruplex regions that stall DNA synthesis in vitro. Human Molecular Genetics. PMID 32191790 DOI: 10.1093/Hmg/Ddaa043 |
0.614 |
|
| 2020 |
Bogenhagen DF, Haley JD. Pulse-chase SILAC-based analyses reveal selective over-synthesis and rapid turnover of mitochondrial protein components of respiratory complexes. The Journal of Biological Chemistry. PMID 31974161 DOI: 10.1074/Jbc.Ra119.011791 |
0.485 |
|
| 2018 |
Horne SJ, Vasquez J, Guo Y, Ly V, Piret S, Leonardo A, Ling J, Revelo MP, Bogenhagen D, Yang VW, He JC, Mallipattu SK. Podocyte-Specific Loss of Krüppel-Like Factor 6 Increases Mitochondrial Injury in Diabetic Kidney Disease. Diabetes. PMID 30115650 DOI: 10.2337/Db17-0958 |
0.427 |
|
| 2018 |
Bogenhagen DF, Ostermeyer-Fay AG, Haley JD, Garcia-Diaz M. Kinetics and Mechanism of Mammalian Mitochondrial Ribosome Assembly. Cell Reports. 22: 1935-1944. PMID 29444443 DOI: 10.1016/J.Celrep.2018.01.066 |
0.504 |
|
| 2017 |
Ryu C, Sun H, Gulati M, Herazo-Maya JD, Chen Y, Osafo-Addo A, Brandsdorfer C, Winkler J, Blaul C, Faunce J, Pan H, Woolard T, Tzouvelekis A, Antin-Ozerkis DE, Puchalski JT, ... ... Bogenhagen DF, et al. Extracellular Mitochondrial DNA is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis. American Journal of Respiratory and Critical Care Medicine. PMID 28783377 DOI: 10.1164/Rccm.201612-2480Oc |
0.433 |
|
| 2016 |
Lee KW, Bogenhagen DF. Scalable Isolation of Mammalian Mitochondria for Nucleic Acid and Nucleoid Analysis. Methods in Molecular Biology (Clifton, N.J.). 1351: 67-79. PMID 26530675 DOI: 10.1007/978-1-4939-3040-1_6 |
0.696 |
|
| 2014 |
Lee KW, Bogenhagen DF. Assignment of 2'-O-methyltransferases to modification sites on the mammalian mitochondrial large subunit 16 S ribosomal RNA (rRNA). The Journal of Biological Chemistry. 289: 24936-42. PMID 25074936 DOI: 10.1074/Jbc.C114.581868 |
0.682 |
|
| 2014 |
Bogenhagen DF, Martin DW, Koller A. Initial steps in RNA processing and ribosome assembly occur at mitochondrial DNA nucleoids. Cell Metabolism. 19: 618-29. PMID 24703694 DOI: 10.1016/J.Cmet.2014.03.013 |
0.591 |
|
| 2013 |
Lee KW, Okot-Kotber C, LaComb JF, Bogenhagen DF. Mitochondrial ribosomal RNA (rRNA) methyltransferase family members are positioned to modify nascent rRNA in foci near the mitochondrial DNA nucleoid. The Journal of Biological Chemistry. 288: 31386-99. PMID 24036117 DOI: 10.1074/Jbc.M113.515692 |
0.724 |
|
| 2013 |
Lu B, Lee J, Nie X, Li M, Morozov YI, Venkatesh S, Bogenhagen DF, Temiakov D, Suzuki CK. Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease. Molecular Cell. 49: 121-32. PMID 23201127 DOI: 10.1016/J.Molcel.2012.10.023 |
0.641 |
|
| 2012 |
Bogenhagen DF. Mitochondrial DNA nucleoid structure. Biochimica Et Biophysica Acta. 1819: 914-20. PMID 22142616 DOI: 10.1016/J.Bbagrm.2011.11.005 |
0.561 |
|
| 2012 |
Alán L, Zelenka J, Špaček T, Bogenhagen DF, Ježek P. Bi-plane FPALM nanoscopy confirms that mitochondrial nucleoids play a central role in mitochondrial biogenesis Biochimica Et Biophysica Acta. 1817. DOI: 10.1016/J.Bbabio.2012.06.188 |
0.505 |
|
| 2011 |
Brown TA, Tkachuk AN, Shtengel G, Kopek BG, Bogenhagen DF, Hess HF, Clayton DA. Superresolution fluorescence imaging of mitochondrial nucleoids reveals their spatial range, limits, and membrane interaction. Molecular and Cellular Biology. 31: 4994-5010. PMID 22006021 DOI: 10.1128/Mcb.05694-11 |
0.534 |
|
| 2010 |
Bogenhagen DF. Does mtDNA nucleoid organization impact aging? Experimental Gerontology. 45: 473-7. PMID 20004238 DOI: 10.1016/J.Exger.2009.12.002 |
0.494 |
|
| 2009 |
Bogenhagen DF. Biochemical isolation of mtDNA nucleoids from animal cells. Methods in Molecular Biology (Clifton, N.J.). 554: 3-14. PMID 19513664 DOI: 10.1007/978-1-59745-521-3_1 |
0.581 |
|
| 2008 |
Zheng L, Zhou M, Guo Z, Lu H, Qian L, Dai H, Qiu J, Yakubovskaya E, Bogenhagen DF, Demple B, Shen B. Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates. Molecular Cell. 32: 325-36. PMID 18995831 DOI: 10.1016/J.Molcel.2008.09.024 |
0.664 |
|
| 2008 |
Liu P, Qian L, Sung JS, de Souza-Pinto NC, Zheng L, Bogenhagen DF, Bohr VA, Wilson DM, Shen B, Demple B. Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria. Molecular and Cellular Biology. 28: 4975-87. PMID 18541666 DOI: 10.1128/Mcb.00457-08 |
0.615 |
|
| 2008 |
Bogenhagen DF, Rousseau D, Burke S. The layered structure of human mitochondrial DNA nucleoids. The Journal of Biological Chemistry. 283: 3665-75. PMID 18063578 DOI: 10.1074/Jbc.M708444200 |
0.646 |
|
| 2008 |
Watkins J, Basu S, Bogenhagen DF. A quantitative proteomic analysis of mitochondrial participation in p19 cell neuronal differentiation. Journal of Proteome Research. 7: 328-38. PMID 18034457 DOI: 10.1021/Pr070300G |
0.731 |
|
| 2007 |
Yakubovskaya E, Lukin M, Chen Z, Berriman J, Wall JS, Kobayashi R, Kisker C, Bogenhagen DF. The EM structure of human DNA polymerase gamma reveals a localized contact between the catalytic and accessory subunits. The Embo Journal. 26: 4283-91. PMID 17762861 DOI: 10.1038/Sj.Emboj.7601843 |
0.685 |
|
| 2006 |
Wang Y, Bogenhagen DF. Human mitochondrial DNA nucleoids are linked to protein folding machinery and metabolic enzymes at the mitochondrial inner membrane. The Journal of Biological Chemistry. 281: 25791-802. PMID 16825194 DOI: 10.1074/Jbc.M604501200 |
0.764 |
|
| 2006 |
Basu S, Bremer E, Zhou C, Bogenhagen DF. MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation. Bioinformatics (Oxford, England). 22: 485-92. PMID 16368773 DOI: 10.1093/Bioinformatics/Btk009 |
0.516 |
|
| 2006 |
Yakubovskaya E, Chen Z, Carrodeguas JA, Kisker C, Bogenhagen DF. Functional human mitochondrial DNA polymerase gamma forms a heterotrimer. The Journal of Biological Chemistry. 281: 374-82. PMID 16263719 DOI: 10.1074/Jbc.M509730200 |
0.712 |
|
| 2006 |
Pinz KG, Bogenhagen DF. The influence of the DNA polymerase gamma accessory subunit on base excision repair by the catalytic subunit. Dna Repair. 5: 121-8. PMID 16202665 DOI: 10.1016/J.Dnarep.2005.08.014 |
0.629 |
|
| 2003 |
Bogenhagen DF, Wang Y, Shen EL, Kobayashi R. Protein components of mitochondrial DNA nucleoids in higher eukaryotes. Molecular & Cellular Proteomics : McP. 2: 1205-16. PMID 14514796 DOI: 10.1074/Mcp.M300035-Mcp200 |
0.813 |
|
| 2003 |
Bogenhagen DF, Clayton DA. Concluding remarks: The mitochondrial DNA replication bubble has not burst. Trends in Biochemical Sciences. 28: 404-5. PMID 12932727 DOI: 10.1016/S0968-0004(03)00165-8 |
0.562 |
|
| 2003 |
Bogenhagen DF, Clayton DA. The mitochondrial DNA replication bubble has not burst. Trends in Biochemical Sciences. 28: 357-60. PMID 12878002 DOI: 10.1016/S0968-0004(03)00132-4 |
0.63 |
|
| 2002 |
Carrodeguas JA, Pinz KG, Bogenhagen DF. DNA binding properties of human pol gammaB. The Journal of Biological Chemistry. 277: 50008-14. PMID 12379656 DOI: 10.1074/Jbc.M207030200 |
0.596 |
|
| 2002 |
Bogenhagen DF. Purification of mitochondria for enzymes involved in nucleic acid transactions. Methods in Molecular Biology (Clifton, N.J.). 197: 199-210. PMID 12013797 DOI: 10.1385/1-59259-284-8:199 |
0.332 |
|
| 2001 |
Perez-Jannotti RM, Klein SM, Bogenhagen DF. Two forms of mitochondrial DNA ligase III are produced in Xenopus laevis oocytes. The Journal of Biological Chemistry. 276: 48978-87. PMID 11598119 DOI: 10.1074/Jbc.M107177200 |
0.717 |
|
| 2001 |
Bogenhagen DF, Pinz KG, Perez-Jannotti RM. Enzymology of mitochondrial base excision repair. Progress in Nucleic Acid Research and Molecular Biology. 68: 257-71. PMID 11554302 DOI: 10.1016/S0079-6603(01)68105-4 |
0.723 |
|
| 2001 |
Shen EL, Bogenhagen DF. Developmentally-regulated packaging of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis. Nucleic Acids Research. 29: 2822-8. PMID 11433028 DOI: 10.1093/Nar/29.13.2822 |
0.817 |
|
| 2001 |
Carrodeguas JA, Theis K, Bogenhagen DF, Kisker C. Crystal structure and deletion analysis show that the accessory subunit of mammalian DNA polymerase γ, PolγB, functions as a homodimer Molecular Cell. 7: 43-54. PMID 11172710 DOI: 10.1016/S1097-2765(01)00153-8 |
0.719 |
|
| 2000 |
Pinz KG, Bogenhagen DF. Characterization of a catalytically slow AP lyase activity in DNA polymerase γ and other family A DNA polymerases Journal of Biological Chemistry. 275: 12509-12514. PMID 10777538 DOI: 10.1074/Jbc.275.17.12509 |
0.605 |
|
| 2000 |
Carrodeguas JA, Bogenhagen DF. Protein sequences conserved in prokaryotic aminoacyl-tRNA synthetases are important for the activity of the processivity factor of human mitochondrial DNA polymerase Nucleic Acids Research. 28: 1237-1244. PMID 10666468 DOI: 10.1093/Nar/28.5.1237 |
0.607 |
|
| 1999 |
Carrodeguas JA, Kobayashi R, Lim SE, Copeland WC, Bogenhagen DF. The accessory subunit of Xenopus laevis mitochondrial DNA polymerase γ increases processivity of the catalytic subunit of human DNA polymerase γ and is related to class II aminoacyl-tRNA synthetases Molecular and Cellular Biology. 19: 4039-4046. PMID 10330144 DOI: 10.1128/Mcb.19.6.4039 |
0.667 |
|
| 1998 |
Lowell C, Bogenhagen D, Clayton DA. S1 nuclease-specific nicking of mitochondrial DNA containing displacement loops. Analytical Biochemistry. 91: 521-31. PMID 9762139 DOI: 10.1016/0003-2697(78)90539-0 |
0.519 |
|
| 1998 |
Bogenhagen DF, Pinz KG. The action of DNA ligase at abasic sites in DNA Journal of Biological Chemistry. 273: 7888-7893. PMID 9525883 DOI: 10.1074/Jbc.273.14.7888 |
0.557 |
|
| 1998 |
Pinz KG, Bogenhagen DF. Efficient repair of abasic sites in DNA by mitochondrial enzymes Molecular and Cellular Biology. 18: 1257-1265. PMID 9488440 DOI: 10.1128/Mcb.18.3.1257 |
0.651 |
|
| 1997 |
Antoshechkin I, Bogenhagen DF, Mastrangelo IA. The HMG-box mitochondrial transcription factor xl-mtTFA binds DNA as a tetramer to activate bidirectional transcription Embo Journal. 16: 3198-3206. PMID 9214636 DOI: 10.1093/Emboj/16.11.3198 |
0.474 |
|
| 1996 |
Mikhailovi VS, Bogenhagen DF. Termination within oligo(dT) tracts in template DNA by DNA polymerase γ occurs with formation of a DNA triplex structure and is relieved by mitochondrial single-stranded DNA-binding protein Journal of Biological Chemistry. 271: 30774-30780. PMID 8940057 DOI: 10.1074/Jbc.271.48.30774 |
0.614 |
|
| 1996 |
Pandit SD, Richard RE, Sternglanz R, Bogenhagen DF. Cloning and characterization of the gene for the somatic form of DNA topoisomerase I from Xenopus laevis Nucleic Acids Research. 24: 3593-3600. PMID 8836188 DOI: 10.1093/Nar/24.18.3593 |
0.394 |
|
| 1996 |
Mikhailov VS, Bogenhagen DF. Effects of Xenopus laevis mitochondrial single-stranded DNA-binding protein on primer-template binding and 3'→5' exonuclease activity of DNA polymerase γ Journal of Biological Chemistry. 271: 18939-18946. PMID 8702557 DOI: 10.1074/Jbc.271.31.18939 |
0.63 |
|
| 1996 |
Bogenhagen DF. Interaction of mtTFB and mtRNA polymerase at core promoters for transcription of Xenopus laevis mtDNA Journal of Biological Chemistry. 271: 12036-12041. PMID 8662670 DOI: 10.1074/Jbc.271.20.12036 |
0.626 |
|
| 1996 |
Ye F, Carrodeguas JA, Bogenhagen DF. The γ subfamily of DNA polymerases: Cloning of a developmentally regulated cDNA encoding Xenopus laevis mitochondrial DNA polymerase γ Nucleic Acids Research. 24: 1481-1488. PMID 8628681 DOI: 10.1093/Nar/24.8.1481 |
0.572 |
|
| 1995 |
Antoshechkin I, Bogenhagen DF. Distinct roles for two purified factors in transcription of Xenopus mitochondrial DNA Molecular and Cellular Biology. 15: 7032-7042. PMID 8524270 DOI: 10.1128/Mcb.15.12.7032 |
0.599 |
|
| 1995 |
Pinz KG, Shibutani S, Bogenhagen DF. Action of mitochondrial DNA polymerase γ at sites of base loss or oxidative damage Journal of Biological Chemistry. 270: 9202-9206. PMID 7721837 DOI: 10.1074/jbc.270.16.9202 |
0.524 |
|
| 1994 |
Matsumoto Y, Kim K, Bogenhagen DF. Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevis oocytes: An alternative pathway of base excision DNA repair Molecular and Cellular Biology. 14: 6187-6197. PMID 7915006 |
0.414 |
|
| 1993 |
Chen YH, Bogenhagen DF. Effects of DNA lesions on transcription elongation by T7 RNA polymerase Journal of Biological Chemistry. 268: 5849-5855. PMID 8449951 |
0.303 |
|
| 1993 |
Bogenhagen DF. Proteolytic footprinting of transcription factor TFIIIA reveals different tightly binding sites for 5S RNA and 5S DNA Molecular and Cellular Biology. 13: 5149-5158. PMID 7689146 |
0.312 |
|
| 1992 |
Bogenhagen DF, Sands MS. Binding of TFIIIA to derivatives of 5S RNA containing sequence substitutions or deletions defines a minimal TFIIIA binding site. Nucleic Acids Research. 20: 2639-45. PMID 1614850 DOI: 10.1093/Nar/20.11.2639 |
0.3 |
|
| 1991 |
Matsumoto Y, Bogenhagen DF. Repair of a synthetic abasic site involves concerted reactions of DNA synthesis followed by excision and ligation Molecular and Cellular Biology. 11: 4441-4447. PMID 1875931 |
0.461 |
|
| 1990 |
Bogenhagen DF, Morvillo MV. Mapping light strand transcripts near the origin of replication of Xenopus laevis; mitochondrial DNA Nucleic Acids Research. 18: 6377-6383. PMID 1700855 DOI: 10.1093/nar/18.21.6377 |
0.405 |
|
| 1989 |
Matsumoto Y, Bogenhagen DF. Repair of a synthetic abasic site in DNA in a Xenopus laevis oocyte extract Molecular and Cellular Biology. 9: 3750-3757. PMID 2779565 |
0.392 |
|
| 1989 |
Insdorf NF, Bogenhagen DF. DNA polymerase γ from Xenopus laevis. II. A 3' → 5' exonuclease is tightly associated with the DNA polymerase activity Journal of Biological Chemistry. 264: 21498-21503. PMID 2600078 |
0.472 |
|
| 1989 |
Insdorf NF, Bogenhagen DF. DNA polymerase γ from Xenopus laevis. I. The identification of a high molecular weight catalytic subunit by a novel DNA polymerase photolabeling procedure Journal of Biological Chemistry. 264: 21491-21497. PMID 2600077 |
0.511 |
|
| 1989 |
Richard RE, Bogenhagen DF. A high molecular weight topoisomerase I from Xenopus laevis ovaries Journal of Biological Chemistry. 264: 4704-4709. PMID 2538454 |
0.377 |
|
| 1988 |
Bogenhagen DF, Romanelli MF. Template sequences required for transcription of Xenopus laevis mitochondrial DNA from two bidirectional promoters Molecular and Cellular Biology. 8: 2917-2924. PMID 3405223 |
0.453 |
|
| 1988 |
Bogenhagen DF, Insdorf NF. Purification of Xenopus laevis mitochondrial RNA polymerase and identification of a dissociable factor required for specific transcription Molecular and Cellular Biology. 8: 2910-2916. PMID 2457154 |
0.352 |
|
| 1986 |
Bogenhagen DF, Yoza BK. Accurate in vitro transcription of Xenopus laevis mitochondrial DNA from two bidirectional promoters Molecular and Cellular Biology. 6: 2543-2550. PMID 3023938 |
0.478 |
|
| 1986 |
Bogenhagen DF, Yoza BK, Cairns SS. Identification of initiation sites for transcription of Xenopus laevis mitochondrial DNA Journal of Biological Chemistry. 261: 8488-8494. PMID 3013854 |
0.362 |
|
| 1986 |
Cairns SS, Bogenhagen DF. Mapping of the displacement loop within the nucleotide sequence of Xenopus laevis mitochondrial DNA Journal of Biological Chemistry. 261: 8481-8487. PMID 2424898 |
0.352 |
|
| 1984 |
Hanas JS, Bogenhagen DF, Wu CW. Binding of Xenopus transcription factor a to 5S RNA and to single stranded DNA Nucleic Acids Research. 12: 2745-2758. PMID 6369252 DOI: 10.1093/Nar/12.6.2745 |
0.475 |
|
| 1984 |
Yoza BK, Bogenhagen DF. Identification and in vitro capping of a primary transcript of human mitochondrial DNA Journal of Biological Chemistry. 259: 3909-3915. PMID 6323446 |
0.433 |
|
| 1984 |
Bogenhagen DF, Applegate EF, Yoza BK. Identification of a promoter for transcription of the heavy strand of human mtDNA: In vitro transcription and deletion mutagenesis Cell. 36: 1105-1113. PMID 6323020 DOI: 10.1016/0092-8674(84)90061-8 |
0.379 |
|
| 1984 |
Hanas JS, Bogenhagen DF, Wu CW. DNA unwinding ability of Xenopus transcription factor A Nucleic Acids Research. 12: 1265-1276. PMID 6320121 DOI: 10.1093/Nar/12.2.1265 |
0.493 |
|
| 1983 |
Hanas JS, Bogenhagen DF, Wu CW. Cooperative model for the binding of Xenopus transcription factor A to the 5S RNA gene Proceedings of the National Academy of Sciences of the United States of America. 80: 2142-2145. PMID 6572967 DOI: 10.1073/Pnas.80.8.2142 |
0.365 |
|
| 1983 |
Wu C, Hanas J, Hazuda D, Bogenhagen D, Wu FY-. The role of zinc in transcriptional control of xenopus 5S RNA gene Inorganica Chimica Acta. 79: 138. DOI: 10.1016/S0020-1693(00)95172-7 |
0.344 |
|
| 1982 |
Bogenhagen D, Lowell C, Clayton DA. Mechanism of mitochondrial DNA replication in mouse L-cells. Replication of unicircular dimer molecules. Journal of Molecular Biology. 148: 77-93. PMID 7310869 DOI: 10.1016/0022-2836(81)90236-9 |
0.629 |
|
| 1979 |
Bogenhagen D, Gillum AM, Martens PA, Clayton DA. Replication of mouse L-cell mitochondrial DNA. Cold Spring Harbor Symposia On Quantitative Biology. 253-62. PMID 289452 DOI: 10.1101/SQB.1979.043.01.031 |
0.529 |
|
| 1978 |
Bogenhagen D, Clayton DA. Mechanism of mitochondrial DNA replication in mouse L-cells: introduction of superhelical turns into newly replicated molecules. Journal of Molecular Biology. 119: 69-81. PMID 633369 DOI: 10.1016/0022-2836(78)90270-X |
0.497 |
|
| 1978 |
Bogenhagen D, Clayton DA. Mechanism of mitochondrial DNA replication in mouse L-cells: kinetics of synthesis and turnover of the initiation sequence. Journal of Molecular Biology. 119: 49-68. PMID 633368 DOI: 10.1016/0022-2836(78)90269-3 |
0.496 |
|
| 1977 |
Bogenhagen D, Clayton DA. Mouse L cell mitochondrial DNA molecules are selected randomly for replication throughout the cell cycle. Cell. 11: 719-27. PMID 560914 DOI: 10.1016/0092-8674(77)90286-0 |
0.517 |
|
| 1976 |
Bogenhagen D, Clayton DA. Thymidylate nucleotide supply for mitochondrial DNA synthesis in mouse L-cells. Effect of 5-fluorodeoxyuridine and methotrexate in thymidine kinase plus and thymidine kinase minus cells. Journal of Biological Chemistry. 251: 2938-2944. DOI: 10.1016/s0021-9258(17)33481-6 |
0.36 |
|
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