Year |
Citation |
Score |
2017 |
Gaskell J, Kersten P, Larrondo LF, Canessa P, Martinez D, Hibbett D, Schmoll M, Kubicek CP, Martinez AT, Yadav J, Master E, Magnuson JK, Yaver D, Berka R, Lail K, et al. Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genomics Data. 14: 21-23. PMID 28831381 DOI: 10.1016/J.Gdata.2017.08.003 |
0.306 |
|
2015 |
Hirakawa MP, Martinez DA, Sakthikumar S, Anderson MZ, Berlin A, Gujja S, Zeng Q, Zisson E, Wang JM, Greenberg JM, Berman J, Bennett RJ, Cuomo CA. Genetic and phenotypic intra-species variation in Candida albicans. Genome Research. 25: 413-25. PMID 25504520 DOI: 10.1101/Gr.174623.114 |
0.325 |
|
2012 |
Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, et al. Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection. Mbio. 3: e00259-12. PMID 22951933 DOI: 10.1128/Mbio.00259-12 |
0.396 |
|
2011 |
Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, ... ... Martinez D, et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nature Biotechnology. 29: 922-7. PMID 21964414 DOI: 10.1038/Nbt.1976 |
0.368 |
|
2011 |
Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, ... ... Martinez D, et al. Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Research. 21: 885-97. PMID 21543515 DOI: 10.1101/Gr.112169.110 |
0.452 |
|
2011 |
Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology. 12: R40. PMID 21501500 DOI: 10.1186/Gb-2011-12-4-R40 |
0.339 |
|
2010 |
Arvas M, Haiminen N, Smit B, Rautio J, Vitikainen M, Wiebe M, Martinez D, Chee C, Kunkel J, Sanchez C, Nelson MA, Pakula T, Saloheimo M, Penttilä M, Kivioja T. Detecting novel genes with sparse arrays. Gene. 467: 41-51. PMID 20691772 DOI: 10.1016/J.Gene.2010.07.009 |
0.576 |
|
2010 |
Martinez DA, Nelson MA. The next generation becomes the now generation. Plos Genetics. 6: e1000906. PMID 20386747 DOI: 10.1371/Journal.Pgen.1000906 |
0.588 |
|
2009 |
Roy S, Martinez D, Platero H, Lane T, Werner-Washburne M. Exploiting amino acid composition for predicting protein-protein interactions. Plos One. 4: e7813. PMID 19936254 DOI: 10.1371/Journal.Pone.0007813 |
0.379 |
|
2009 |
Schübbe S, Williams TJ, Xie G, Kiss HE, Brettin TS, Martinez D, Ross CA, Schüler D, Cox BL, Nealson KH, Bazylinski DA. Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. Applied and Environmental Microbiology. 75: 4835-52. PMID 19465526 DOI: 10.1128/Aem.02874-08 |
0.386 |
|
2009 |
Vanden Wymelenberg A, Gaskell J, Mozuch M, Kersten P, Sabat G, Martinez D, Cullen D. Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression. Applied and Environmental Microbiology. 75: 4058-68. PMID 19376920 DOI: 10.1128/Aem.00314-09 |
0.468 |
|
2009 |
Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/Pnas.0809575106 |
0.345 |
|
2008 |
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nature Biotechnology. 26: 553-60. PMID 18454138 DOI: 10.1038/Nbt1403 |
0.596 |
|
2008 |
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EGJ, Grigoriev IV, Harris P, Jackson M, Kubicek CP, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) (Nature Biotechnology (2008) 26, (553-560)) Nature Biotechnology. 26: 1193. DOI: 10.1038/Nbt1008-1193A |
0.579 |
|
2007 |
Montsant A, Allen AE, Coesel S, Martino AD, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, ... ... Martinez D, et al. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana Journal of Phycology. 43: 585-604. DOI: 10.1111/J.1529-8817.2007.00342.X |
0.393 |
|
2006 |
Vanden Wymelenberg A, Minges P, Sabat G, Martinez D, Aerts A, Salamov A, Grigoriev I, Shapiro H, Putnam N, Belinky P, Dosoretz C, Gaskell J, Kersten P, Cullen D. Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins. Fungal Genetics and Biology : Fg & B. 43: 343-56. PMID 16524749 DOI: 10.1016/J.Fgb.2006.01.003 |
0.418 |
|
2006 |
Grigoriev IV, Martinez DA, Salamov AA. Fungal genomic annotation Applied Mycology and Biotechnology. 6: 123-142. DOI: 10.1016/S1874-5334(06)80008-0 |
0.387 |
|
2005 |
Wymelenberg AV, Sabat G, Martinez D, Rajangam AS, Teeri TT, Gaskell J, Kersten PJ, Cullen D. The Phanerochaete chrysosporium secretome: database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium. Journal of Biotechnology. 118: 17-34. PMID 15888348 DOI: 10.1016/J.Jbiotec.2005.03.010 |
0.372 |
|
2004 |
Anwaruzzaman M, Chin BL, Li XP, Lohr M, Martinez DA, Niyogi KK. Genomic analysis of mutants affecting xanthophyll biosynthesis and regulation of photosynthetic light harvesting in Chlamydomonas reinhardtii. Photosynthesis Research. 82: 265-76. PMID 16143839 DOI: 10.1007/S11120-004-2439-Y |
0.329 |
|
2004 |
Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (New York, N.Y.). 306: 79-86. PMID 15459382 DOI: 10.1126/Science.1101156 |
0.401 |
|
2004 |
Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, ... ... Martinez D, et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431: 268-74. PMID 15372022 DOI: 10.1038/Nature02919 |
0.362 |
|
2004 |
Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nature Biotechnology. 22: 695-700. PMID 15122302 DOI: 10.1038/Nbt967 |
0.394 |
|
2004 |
Grimwood J, Gordon LA, Olsen A, Terry A, Schmutz J, Lamerdin J, Hellsten U, Goodstein D, Couronne O, Tran-Gyamfi M, Aerts A, Altherr M, Ashworth L, Bajorek E, Black S, ... ... Martinez D, et al. The DNA sequence and biology of human chromosome 19. Nature. 428: 529-35. PMID 15057824 DOI: 10.1038/Nature02399 |
0.33 |
|
2003 |
Grossman AR, Harris EE, Hauser C, Lefebvre PA, Martinez D, Rokhsar D, Shrager J, Silflow CD, Stern D, Vallon O, Zhang Z. Chlamydomonas reinhardtii at the crossroads of genomics. Eukaryotic Cell. 2: 1137-50. PMID 14665449 DOI: 10.1128/Ec.2.6.1137-1150.2003 |
0.356 |
|
2002 |
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, ... ... Martinez D, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (New York, N.Y.). 298: 2157-67. PMID 12481130 DOI: 10.1126/Science.1080049 |
0.426 |
|
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