Simon R. Knott, Ph.D. - Publications

Affiliations: 
2011 Biology University of Southern California, Los Angeles, CA, United States 
Area:
Bioinformatics Biology, Molecular Biology, Genetics

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chesnokova VM, Zonis S, Apostolou N, Hannah EQ, Knott S, Wawrowsky K, Ben-Shlomo A, Barrett R, Gorbunova V, Karalis K, Melmed S. OR16-06 Age-Associated Local GH Promotes Colon Neoplasia Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.1474  0.432
2018 Xie Y, Cao Z, Wong WP, Guan Y, Zhang J, Walczak E, Murphy D, Ran L, Sirota I, Wang S, Shukla S, Gao D, Wongvipat J, Knott S, Chang K, et al. Abstract B13: COP1-ETS axis regulates ERK transcriptional output and modulates sensitivity to MAPK inhibitors Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Sarcomas17-B13  0.392
2018 Rodriguez-Malave NI, Kanska JE, Vavra KC, Hazelett D, Corona RI, Seo J, Freedman M, Knott SR, Orsulic S, Karlan BY, Lawrenson K, Gayther SA. Abstract 5435: Role of the WT1 transcription factor in high-grade serous ovarian cancer Cancer Research. 78: 5435-5435. DOI: 10.1158/1538-7445.Am2018-5435  0.436
2017 Delás MJ, Sabin LR, Dolzhenko E, Knott SR, Munera Maravilla E, Jackson BT, Wild SA, Kovacevic T, Stork EM, Zhou M, Erard N, Lee E, Kelley DR, Roth M, Barbosa ISA, et al. lncRNA requirements for mouse acute myeloid leukemia and normal differentiation. Elife. 6. PMID 28875933 DOI: 10.7554/Elife.25607  0.358
2015 Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ. RNF17 blocks promiscuous activity of PIWI proteins in mouse testes. Genes & Development. 29: 1403-15. PMID 26115953 DOI: 10.1101/Gad.265215.115  0.391
2014 Ostrow AZ, Nellimoottil T, Knott SR, Fox CA, Tavaré S, Aparicio OM. Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. Plos One. 9: e87647. PMID 24504085 DOI: 10.1371/Journal.Pone.0087647  0.594
2013 Dalton JE, Fear JM, Knott S, Baker BS, McIntyre LM, Arbeitman MN. Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains. Bmc Genomics. 14: 659. PMID 24074028 DOI: 10.1186/1471-2164-14-659  0.409
2013 Zhong Y, Nellimoottil T, Peace JM, Knott SR, Villwock SK, Yee JM, Jancuska JM, Rege S, Tecklenburg M, Sclafani RA, Tavaré S, Aparicio OM. The level of origin firing inversely affects the rate of replication fork progression. The Journal of Cell Biology. 201: 373-83. PMID 23629964 DOI: 10.1083/Jcb.201208060  0.623
2012 Ipsaro JJ, Haase AD, Knott SR, Joshua-Tor L, Hannon GJ. The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis Nature. 491: 279-282. PMID 23064227 DOI: 10.1038/Nature11502  0.392
2012 Knott SR, Peace JM, Ostrow AZ, Gan Y, Rex AE, Viggiani CJ, Tavaré S, Aparicio OM. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell. 148: 99-111. PMID 22265405 DOI: 10.1016/J.Cell.2011.12.012  0.602
2010 Viggiani CJ, Knott SR, Aparicio OM. Genome-wide analysis of DNA synthesis by BrdU immunoprecipitation on tiling microarrays (BrdU-IP-chip) in Saccharomyces cerevisiae. Cold Spring Harbor Protocols. 2010: pdb.prot5385. PMID 20150148 DOI: 10.1101/pdb.prot5385  0.335
2009 Knott SR, Viggiani CJ, Aparicio OM, Tavaré S. Strategies for analyzing highly enriched IP-chip datasets. Bmc Bioinformatics. 10: 305. PMID 19772646 DOI: 10.1186/1471-2105-10-305  0.515
2009 Knott SR, Viggiani CJ, Aparicio OM. To promote and protect: coordinating DNA replication and transcription for genome stability. Epigenetics. 4: 362-5. PMID 19736523  0.48
2009 Knott SR, Viggiani CJ, Tavaré S, Aparicio OM. Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes & Development. 23: 1077-90. PMID 19417103 DOI: 10.1101/Gad.1784309  0.616
2008 Szyjka SJ, Aparicio JG, Viggiani CJ, Knott S, Xu W, Tavaré S, Aparicio OM. Rad53 regulates replication fork restart after DNA damage in Saccharomyces cerevisiae. Genes & Development. 22: 1906-20. PMID 18628397 DOI: 10.1101/Gad.1660408  0.692
2007 Fernald GH, Knott S, Pachner A, Caillier SJ, Narayan K, Oksenberg JR, Mousavi P, Baranzini SE. Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans. Journal of Immunology (Baltimore, Md. : 1950). 178: 5076-85. PMID 17404290 DOI: 10.4049/Jimmunol.178.8.5076  0.336
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