Sharla J. Jones, Ed.D. - Publications

Affiliations: 
2007 University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Linguistics Language, Technology of Education, Rhetoric and Composition Language, Bilingual and Multicultural Education

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Garancher A, Suzuki H, Haricharan S, Chau LQ, Masihi MB, Rusert JM, Norris PS, Carrette F, Romero MM, Morrissy SA, Skowron P, Cavalli FMG, Farooq H, Ramaswamy V, Jones SJM, et al. Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma. Nature Neuroscience. PMID 32424282 DOI: 10.1038/s41593-020-0628-4  0.32
2019 Kwan HH, Culibrk L, Taylor GA, Leelakumari S, Tan R, Jackman SD, Tse K, MacLeod T, Cheng D, Chuah E, Kirk H, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, ... ... Jones SJM, et al. The Genome of the Steller Sea Lion (). Genes. 10. PMID 31248052 DOI: 10.3390/genes10070486  0.32
2018 Taylor GA, Kirk H, Coombe L, Jackman SD, Chu J, Tse K, Cheng D, Chuah E, Pandoh P, Carlsen R, Zhao Y, Mungall AJ, Moore R, Birol I, Franke M, ... ... Jones SJM, et al. The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis. Genes. 9. PMID 30513700 DOI: 10.3390/genes9120598  0.32
2018 Thibodeau ML, Bonakdar M, Zhao E, Mungall KL, Reisle C, Zhang W, Bye MH, Thiessen N, Bleile D, Mungall AJ, Ma YP, Jones MR, Renouf DJ, Lim HJ, Yip S, ... ... Jones SJM, et al. Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma. Npj Precision Oncology. 2: 8. PMID 29872726 DOI: 10.1038/s41698-018-0050-5  0.32
2017 Northcott PA, Buchhalter I, Morrissy AS, Hovestadt V, Weischenfeldt J, Ehrenberger T, Gröbner S, Segura-Wang M, Zichner T, Rudneva VA, Warnatz HJ, Sidiropoulos N, Phillips AH, Schumacher S, Kleinheinz K, ... ... Jones SJM, et al. The whole-genome landscape of medulloblastoma subtypes. Nature. 547: 311-317. PMID 28726821 DOI: 10.1038/nature22973  0.32
2017 Thibodeau ML, Reisle C, Zhao E, Martin LA, Alwelaie Y, Mungall KL, Ch'ng C, Thomas R, Ng T, Yip S, Lim H, Sun S, Young SS, Karsan A, Zhao Y, ... ... Jones SJM, et al. Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline CHEK2:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal breast carcinoma. Cold Spring Harbor Molecular Case Studies. PMID 28514723 DOI: 10.1101/mcs.a001628  0.32
2017 Morrissy AS, Cavalli FM, Remke M, Ramaswamy V, Shih DJ, Holgado BL, Farooq H, Donovan LK, Garzia L, Agnihotri S, Kiehna EN, Mercier E, Mayoh C, Papillon-Cavanagh S, Nikbakht H, ... ... Jones SJ, et al. Spatial heterogeneity in medulloblastoma. Nature Genetics. PMID 28394352 DOI: 10.1038/ng.3838  0.32
2016 Sheffield BS, Fulton R, Kalloger SE, Milne K, Geller G, Jones M, Jacquemont C, Zachara S, Zhao E, Pleasance E, Laskin J, Jones SJ, Marra MA, Yip S, Nelson BH, et al. Investigation of PD-L1 Biomarker Testing Methods for PD-1 Axis Inhibition in Non-squamous Non-small Cell Lung Cancer. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. PMID 27591097 DOI: 10.1369/0022155416665338  0.32
2016 Miller RR, Langille MG, Montoya V, Crisan A, Stefanovic A, Martin I, Hoang L, Patrick DM, Romney M, Tyrrell G, Jones SJ, Brinkman FS, Tang P. Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005-2009. The Canadian Journal of Infectious Diseases & Medical Microbiology = Journal Canadien Des Maladies Infectieuses Et De La Microbiologie MéDicale. 2016: 5381871. PMID 27366170 DOI: 10.1155/2016/5381871  0.32
2016 de Leeuw CN, Korecki AJ, Berry GE, Hickmott JW, Lam SL, Lengyell TC, Bonaguro RJ, Borretta LJ, Chopra V, Chou AY, D'Souza CA, Kaspieva O, Laprise S, McInerny SC, Portales-Casamar E, ... ... Jones SJ, et al. rAAV-compatible MiniPromoters for restricted expression in the brain and eye. Molecular Brain. 9: 52. PMID 27164903 DOI: 10.1186/s13041-016-0232-4  0.32
2016 Craig DW, Nasser S, Corbett R, Chan SK, Murray L, Legendre C, Tembe W, Adkins J, Kim N, Wong S, Baker A, Enriquez D, Pond S, Pleasance E, Mungall AJ, ... ... Jones SJ, et al. A somatic reference standard for cancer genome sequencing. Scientific Reports. 6: 24607. PMID 27094764 DOI: 10.1038/srep24607  0.32
2016 Jones MR, Schrader KA, Shen Y, Pleasance E, Ch'ng C, Dar N, Yip S, Renouf DJ, Schein JE, Mungall AJ, Zhao Y, Moore R, Ma Y, Sheffield BS, Ng T, ... Jones SJ, et al. Response to angiotensin blockade with irbesartan in a patient with metastatic colorectal cancer. Annals of Oncology : Official Journal of the European Society For Medical Oncology / Esmo. PMID 27022066 DOI: 10.1093/annonc/mdw060  0.32
2016 Chun HE, Lim EL, Heravi-Moussavi A, Saberi S, Mungall KL, Bilenky M, Carles A, Tse K, Shlafman I, Zhu K, Qian JQ, Palmquist DL, He A, Long W, Goya R, ... ... Jones SJ, et al. Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways. Cancer Cell. 29: 394-406. PMID 26977886 DOI: 10.1016/j.ccell.2016.02.009  0.32
2015 Kasaian K, Wiseman SM, Walker BA, Schein JE, Zhao Y, Hirst M, Moore RA, Mungall AJ, Marra MA, Jones SJ. The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy. Bmc Cancer. 15: 984. PMID 26680454 DOI: 10.1186/s12885-015-1955-9  0.32
2015 Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL. ORegAnno 3.0: a community-driven resource for curated regulatory annotation. Nucleic Acids Research. PMID 26578589 DOI: 10.1093/nar/gkv1203  0.32
2015 Garside VC, Cullum R, Alder O, Lu DY, Vander Werff R, Bilenky M, Zhao Y, Jones SJ, Marra MA, Underhill TM, Hoodless PA. SOX9 modulates the expression of key transcription factors required for heart valve development. Development (Cambridge, England). PMID 26525672 DOI: 10.1242/dev.125252  0.32
2015 Liu L, Li H, Dargahi D, Shynlova O, Slater D, Jones SJ, Lye SJ, Dong X. HoxA13 Regulates Phenotype Regionalization of Human Pregnant Myometrium. The Journal of Clinical Endocrinology and Metabolism. jc20152815. PMID 26485220 DOI: 10.1210/jc.2015-2815  0.32
2015 Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I. LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads. Gigascience. 4: 35. PMID 26244089 DOI: 10.1186/s13742-015-0076-3  0.32
2015 Lebovitz CB, Robertson AG, Goya R, Jones SJ, Morin RD, Marra MA, Gorski SM. Cross-cancer profiling of molecular alterations within the human autophagy interaction network. Autophagy. 0. PMID 26208877 DOI: 10.1080/15548627.2015.1067362  0.32
2015 Bose P, Pleasance ED, Jones M, Shen Y, Ch'ng C, Reisle C, Schein JE, Mungall AJ, Moore R, Ma Y, Sheffield BS, Thomson T, Rasmussen S, Ng T, Yip S, ... ... Jones SJ, et al. Integrative genomic analysis of ghost cell odontogenic carcinoma. Oral Oncology. 51: e71-5. PMID 26173781 DOI: 10.1016/j.oraloncology.2015.06.013  0.32
2015 Cusulin C, Chesnelong C, Bose P, Bilenky M, Kopciuk K, Chan JA, Cairncross JG, Jones SJ, Marra MA, Luchman HA, Weiss S. Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes. Stem Cell Reports. PMID 26095605 DOI: 10.1016/j.stemcr.2015.05.010  0.32
2015 Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, ... ... Jones SJ, et al. Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism. The Plant Journal : For Cell and Molecular Biology. 83: 189-212. PMID 26017574 DOI: 10.1111/tpj.12886  0.32
2015 Choi H, Kasaian K, Melck A, Ong K, Jones SJ, White A, Wiseman SM. Papillary thyroid carcinoma: prognostic significance of cancer presentation. American Journal of Surgery. 210: 298-301. PMID 25997714 DOI: 10.1016/j.amjsurg.2014.12.047  0.32
2015 Halwani Y, Kojic LD, Chan SK, Phang TP, Masoudi H, Jones SJ, Nabi IR, Wiseman SM. Prognostic significance of autocrine motility factor receptor expression by colorectal cancer and lymph node metastases. American Journal of Surgery. 209: 884-9; discussion 88. PMID 25852009 DOI: 10.1016/j.amjsurg.2015.01.010  0.32
2015 Sheffield BS, Tinker AV, Shen Y, Hwang H, Li-Chang HH, Pleasance E, Ch'ng C, Lum A, Lorette J, McConnell YJ, Sun S, Jones SJ, Gown AM, Huntsman DG, Schaeffer DF, et al. Personalized oncogenomics: clinical experience with malignant peritoneal mesothelioma using whole genome sequencing. Plos One. 10: e0119689. PMID 25798586 DOI: 10.1371/journal.pone.0119689  0.32
2015 Cohen AS, Tuysuz B, Shen Y, Bhalla SK, Jones SJ, Gibson WT. A novel mutation in EED associated with overgrowth. Journal of Human Genetics. 60: 339-42. PMID 25787343 DOI: 10.1038/jhg.2015.26  0.32
2015 Gascard P, Bilenky M, Sigaroudinia M, Zhao J, Li L, Carles A, Delaney A, Tam A, Kamoh B, Cho S, Griffith M, Chu A, Robertson G, Cheung D, Li I, ... ... Jones SJ, et al. Epigenetic and transcriptional determinants of the human breast. Nature Communications. 6: 6351. PMID 25690954 DOI: 10.1038/ncomms7351  0.32
2015 Shoshan E, Mobley AK, Braeuer RR, Kamiya T, Huang L, Vasquez ME, Salameh A, Lee HJ, Kim SJ, Ivan C, Velazquez-Torres G, Nip KM, Zhu K, Brooks D, Jones SJ, et al. Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis. Nature Cell Biology. 17: 311-21. PMID 25686251 DOI: 10.1038/ncb3110  0.32
2015 Li-Chang HH, Kasaian K, Ng Y, Lum A, Kong E, Lim H, Jones SJ, Huntsman DG, Schaeffer DF, Yip S. Retrospective review using targeted deep sequencing reveals mutational differences between gastroesophageal junction and gastric carcinomas. Bmc Cancer. 15: 32. PMID 25656989 DOI: 10.1186/s12885-015-1021-7  0.32
2015 Kasaian K, Chindris AM, Wiseman SM, Mungall KL, Zeng T, Tse K, Schein JE, Rivera M, Necela BM, Kachergus JM, Casler JD, Mungall AJ, Moore RA, Marra MA, Copland JA, ... ... Jones SJ, et al. MEN1 mutations in Hürthle cell (oncocytic) thyroid carcinoma. The Journal of Clinical Endocrinology and Metabolism. 100: E611-5. PMID 25625803 DOI: 10.1210/jc.2014-3622  0.32
2015 Schmouth JF, Arenillas D, Corso-Díaz X, Xie YY, Bohacec S, Banks KG, Bonaguro RJ, Wong SH, Jones SJM, Marra MA, Simpson EM, Wasserman WW. Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development Bmc Genomics. 16. DOI: 10.1186/s12864-015-1770-3  0.32
2015 Mondal T, Subhash S, Vaid R, Enroth S, Uday S, Reinius B, Mitra S, Mohammed A, James AR, Hoberg E, Moustakas A, Gyllensten U, Jones SJM, Gustafsson CM, Sims AH, et al. MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures Nature Communications. 6. DOI: 10.1038/ncomms8743  0.32
2014 Dargahi D, Swayze RD, Yee L, Bergqvist PJ, Hedberg BJ, Heravi-Moussavi A, Dullaghan EM, Dercho R, An J, Babcook JS, Jones SJ. A pan-cancer analysis of alternative splicing events reveals novel tumor-associated splice variants of matriptase. Cancer Informatics. 13: 167-77. PMID 25506199 DOI: 10.4137/CIN.S19435  0.32
2014 De La Torre AR, Birol I, Bousquet J, Ingvarsson PK, Jansson S, Jones SJ, Keeling CI, MacKay J, Nilsson O, Ritland K, Street N, Yanchuk A, Zerbe P, Bohlmann J. Insights into conifer giga-genomes. Plant Physiology. 166: 1724-32. PMID 25349325 DOI: 10.1104/pp.114.248708  0.32
2014 Chetaille P, Preuss C, Burkhard S, Côté JM, Houde C, Castilloux J, Piché J, Gosset N, Leclerc S, Wünnemann F, Thibeault M, Gagnon C, Galli A, Tuck E, Hickson GR, ... ... Jones SJ, et al. Mutations in SGOL1 cause a novel cohesinopathy affecting heart and gut rhythm. Nature Genetics. 46: 1245-9. PMID 25282101 DOI: 10.1038/ng.3113  0.32
2014 Alder O, Cullum R, Lee S, Kan AC, Wei W, Yi Y, Garside VC, Bilenky M, Griffith M, Morrissy AS, Robertson GA, Thiessen N, Zhao Y, Chen Q, Pan D, ... Jones SJ, et al. Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation. Cell Reports. 9: 261-71. PMID 25263553 DOI: 10.1016/j.celrep.2014.08.046  0.32
2014 Dean RA, Fam HK, An J, Choi K, Shimizu Y, Jones SJ, Boerkoel CF, Interthal H, Pfeifer TA. Identification of a putative Tdp1 inhibitor (CD00509) by in vitro and cell-based assays. Journal of Biomolecular Screening. 19: 1372-82. PMID 25117203 DOI: 10.1177/1087057114546551  0.32
2014 Butterfield YS, Kreitzman M, Thiessen N, Corbett RD, Li Y, Pang J, Ma YP, Jones SJ, Birol Ä°. JAGuaR: junction alignments to genome for RNA-seq reads. Plos One. 9: e102398. PMID 25062255 DOI: 10.1371/journal.pone.0102398  0.32
2014 van den Berg S, Shen Y, Jones SJ, Gibson WT. Genetic counseling in direct-to-consumer exome sequencing: a case report. Journal of Genetic Counseling. 23: 742-53. PMID 24954083 DOI: 10.1007/s10897-014-9737-0  0.32
2014 Beaulieu CL, Majewski J, Schwartzentruber J, Samuels ME, Fernandez BA, Bernier FP, Brudno M, Knoppers B, Marcadier J, Dyment D, Adam S, Bulman DE, Jones SJ, Avard D, Nguyen MT, et al. FORGE Canada Consortium: outcomes of a 2-year national rare-disease gene-discovery project. American Journal of Human Genetics. 94: 809-17. PMID 24906018 DOI: 10.1016/j.ajhg.2014.05.003  0.32
2014 Cohen AS, Townsend KN, Xiang QS, Attariwala R, Borchers C, Senger C, Picker W, Levi J, Yewchuk L, Tan J, Eydoux P, Lum A, Yong SL, McKinnon ML, Lear SA, ... ... Jones SJ, et al. Somatic mosaicism for the p.His1047Arg mutation in PIK3CA in a girl with mesenteric lipomatosis. American Journal of Medical Genetics. Part A. 164: 2360-4. PMID 24903541 DOI: 10.1002/ajmg.a.36622  0.32
2014 Jamshidi F, Pleasance E, Li Y, Shen Y, Kasaian K, Corbett R, Eirew P, Lum A, Pandoh P, Zhao Y, Schein JE, Moore RA, Rassekh R, Huntsman DG, Knowling M, ... ... Jones SJ, et al. Diagnostic value of next-generation sequencing in an unusual sphenoid tumor. The Oncologist. 19: 623-30. PMID 24807916 DOI: 10.1634/theoncologist.2013-0390  0.32
2014 Lobo Prabhu KC, Vu L, Chan SK, Phang T, Gown A, Jones SJ, Wiseman SM. Predictive utility of cyclo-oxygenase-2 expression by colon and rectal cancer. American Journal of Surgery. 207: 712-6. PMID 24791632 DOI: 10.1016/j.amjsurg.2013.12.019  0.32
2014 Chang AC, Garside VC, Fournier M, Smrz J, Vrljicak P, Umlandt P, Fuller M, Robertson G, Zhao Y, Tam A, Jones SJ, Marra MA, Hoodless PA, Karsan A. A Notch-dependent transcriptional hierarchy promotes mesenchymal transdifferentiation in the cardiac cushion. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 243: 894-905. PMID 24633789 DOI: 10.1002/dvdy.24127  0.32
2014 Zovoilis A, Mungall AJ, Moore R, Varhol R, Chu A, Wong T, Marra M, Jones SJ. The expression level of small non-coding RNAs derived from the first exon of protein-coding genes is predictive of cancer status. Embo Reports. 15: 402-10. PMID 24534129 DOI: 10.1002/embr.201337950  0.32
2014 Demos MK, van Karnebeek CD, Ross CJ, Adam S, Shen Y, Zhan SH, Shyr C, Horvath G, Suri M, Fryer A, Jones SJ, Friedman JM. A novel recurrent mutation in ATP1A3 causes CAPOS syndrome. Orphanet Journal of Rare Diseases. 9: 15. PMID 24468074 DOI: 10.1186/1750-1172-9-15  0.32
2014 Greenway SC, McLeod R, Hume S, Roslin NM, Alvarez N, Giuffre M, Zhan SH, Shen Y, Preuss C, Andelfinger G, Jones SJ, Gerull B. Exome sequencing identifies a novel variant in ACTC1 associated with familial atrial septal defect. The Canadian Journal of Cardiology. 30: 181-7. PMID 24461919 DOI: 10.1016/j.cjca.2013.12.003  0.32
2014 Younesy H, Möller T, Heravi-Moussavi A, Cheng JB, Costello JF, Lorincz MC, Karimi MM, Jones SJ. ALEA: a toolbox for allele-specific epigenomics analysis. Bioinformatics (Oxford, England). PMID 24371156 DOI: 10.1093/bioinformatics/btt744  0.32
2014 Stirling PC, Shen Y, Corbett R, Jones SJ, Hieter P. Genome destabilizing mutator alleles drive specific mutational trajectories in Saccharomyces cerevisiae. Genetics. 196: 403-12. PMID 24336748 DOI: 10.1534/genetics.113.159806  0.32
2014 Johnson BE, Mazor T, Hong C, Barnes M, Aihara K, McLean CY, Fouse SD, Yamamoto S, Ueda H, Tatsuno K, Asthana S, Jalbert LE, Nelson SJ, Bollen AW, Gustafson WC, ... ... Jones SJ, et al. Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma. Science (New York, N.Y.). 343: 189-93. PMID 24336570 DOI: 10.1126/science.1239947  0.32
2013 Halbritter J, Bizet AA, Schmidts M, Porath JD, Braun DA, Gee HY, McInerney-Leo AM, Krug P, Filhol E, Davis EE, Airik R, Czarnecki PG, Lehman AM, Trnka P, Nitschké P, ... ... Jones SJ, et al. Defects in the IFT-B component IFT172 cause Jeune and Mainzer-Saldino syndromes in humans. American Journal of Human Genetics. 93: 915-25. PMID 24140113 DOI: 10.1016/j.ajhg.2013.09.012  0.32
2013 Schmouth JF, Castellarin M, Laprise S, Banks KG, Bonaguro RJ, McInerny SC, Borretta L, Amirabbasi M, Korecki AJ, Portales-Casamar E, Wilson G, Dreolini L, Jones SJ, Wasserman WW, Goldowitz D, et al. Non-coding-regulatory regions of human brain genes delineated by bacterial artificial chromosome knock-in mice. Bmc Biology. 11: 106. PMID 24124870 DOI: 10.1186/1741-7007-11-106  0.32
2013 Bosdet IE, Docking TR, Butterfield YS, Mungall AJ, Zeng T, Coope RJ, Yorida E, Chow K, Bala M, Young SS, Hirst M, Birol I, Moore RA, Jones SJ, Marra MA, et al. A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations. The Journal of Molecular Diagnostics : Jmd. 15: 796-809. PMID 24094589 DOI: 10.1016/j.jmoldx.2013.07.004  0.32
2013 Hadj Khodabakhshi A, Fejes AP, Birol I, Jones SJM. Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline Bmc Bioinformatics. 14. PMID 23714400 DOI: 10.1186/1471-2105-14-167  0.32
2013 Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, ... ... Jones SJ, et al. Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data. Bioinformatics (Oxford, England). 29: 1492-7. PMID 23698863 DOI: 10.1093/bioinformatics/btt178  0.32
2013 Hall DE, Yuen MM, Jancsik S, Quesada AL, Dullat HK, Li M, Henderson H, Arango-Velez A, Liao NY, Docking RT, Chan SK, Cooke JE, Breuil C, Jones SJ, Keeling CI, et al. Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana). Bmc Plant Biology. 13: 80. PMID 23679205 DOI: 10.1186/1471-2229-13-80  0.32
2013 Kasaian K, Wiseman SM, Thiessen N, Mungall KL, Corbett RD, Qian JQ, Nip KM, He A, Tse K, Chuah E, Varhol RJ, Pandoh P, McDonald H, Zeng T, Tam A, ... ... Jones SJ, et al. Complete genomic landscape of a recurring sporadic parathyroid carcinoma. The Journal of Pathology. 230: 249-60. PMID 23616356 DOI: 10.1002/path.4203  0.32
2013 Reipas KM, Law JH, Couto N, Islam S, Li Y, Li H, Cherkasov A, Jung K, Cheema AS, Jones SJ, Hassell JA, Dunn SE. Luteolin is a novel p90 ribosomal S6 kinase (RSK) inhibitor that suppresses Notch4 signaling by blocking the activation of Y-box binding protein-1 (YB-1). Oncotarget. 4: 329-45. PMID 23593654  0.32
2013 Trinh DL, Scott DW, Morin RD, Mendez-Lago M, An J, Jones SJ, Mungall AJ, Zhao Y, Schein J, Steidl C, Connors JM, Gascoyne RD, Marra MA. Analysis of FOXO1 mutations in diffuse large B-cell lymphoma. Blood. 121: 3666-74. PMID 23460611 DOI: 10.1182/blood-2013-01-479865  0.32
2013 Clemons AM, Brockway HM, Yin Y, Kasinathan B, Butterfield YS, Jones SJ, Colaiácovo MP, Smolikove S. akirin is required for diakinesis bivalent structure and synaptonemal complex disassembly at meiotic prophase I. Molecular Biology of the Cell. 24: 1053-67. PMID 23363597 DOI: 10.1091/mbc.E12-11-0841  0.32
2013 Pugh TJ, Morozova O, Attiyeh EF, Asgharzadeh S, Wei JS, Auclair D, Carter SL, Cibulskis K, Hanna M, Kiezun A, Kim J, Lawrence MS, Lichenstein L, McKenna A, Pedamallu CS, ... ... Jones SJ, et al. The genetic landscape of high-risk neuroblastoma. Nature Genetics. 45: 279-84. PMID 23334666 DOI: 10.1038/ng.2529  0.32
2013 Wei W, Hou J, Alder O, Ye X, Lee S, Cullum R, Chu A, Zhao Y, Warner SM, Knight DA, Yang D, Jones SJ, Marra MA, Hoodless PA. Genome-wide microRNA and messenger RNA profiling in rodent liver development implicates mir302b and mir20a in repressing transforming growth factor-beta signaling. Hepatology (Baltimore, Md.). 57: 2491-501. PMID 23315977 DOI: 10.1002/hep.26252  0.32
2013 Tennant BR, Robertson AG, Kramer M, Li L, Zhang X, Beach M, Thiessen N, Chiu R, Mungall K, Whiting CJ, Sabatini PV, Kim A, Gottardo R, Marra MA, Lynn FC, ... Jones SJ, et al. Identification and analysis of murine pancreatic islet enhancers. Diabetologia. 56: 542-52. PMID 23238790 DOI: 10.1007/s00125-012-2797-5  0.32
2013 Dubuc AM, Remke M, Korshunov A, Northcott PA, Zhan SH, Mendez-Lago M, Kool M, Jones DT, Unterberger A, Morrissy AS, Shih D, Peacock J, Ramaswamy V, Rolider A, Wang X, ... ... Jones SJ, et al. Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma. Acta Neuropathologica. 125: 373-84. PMID 23184418 DOI: 10.1007/s00401-012-1070-9  0.32
2013 Younesy H, Nielsen CB, Möller T, Alder O, Cullum R, Lorincz MC, Karimi MM, Jones SJM. An interactive analysis and exploration tool for epigenomic data Computer Graphics Forum. 32: 91-100. DOI: 10.1111/cgf.12096  0.32
2012 Khodabakhshi AH, Morin RD, Fejes AP, Mungall AJ, Mungall KL, Bolger-Munro M, Johnson NA, Connors JM, Gascoyne RD, Marra MA, Birol I, Jones SJM. Recurrent targets of aberrant somatic hypermutation in lymphoma Oncotarget. 3: 1308-1319. PMID 23131835  0.32
2012 Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ. Spark: a navigational paradigm for genomic data exploration. Genome Research. 22: 2262-9. PMID 22960372 DOI: 10.1101/gr.140665.112  0.32
2012 Wu C, Wyatt AW, McPherson A, Lin D, McConeghy BJ, Mo F, Shukin R, Lapuk AV, Jones SJ, Zhao Y, Marra MA, Gleave ME, Volik SV, Wang Y, Sahinalp SC, et al. Poly-gene fusion transcripts and chromothripsis in prostate cancer. Genes, Chromosomes & Cancer. 51: 1144-53. PMID 22927308 DOI: 10.1002/gcc.21999  0.32
2012 Vrljicak P, Cullum R, Xu E, Chang AC, Wederell ED, Bilenky M, Jones SJ, Marra MA, Karsan A, Hoodless PA. Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse. Plos One. 7: e40815. PMID 22815831 DOI: 10.1371/journal.pone.0040815  0.32
2012 Chiu CG, Yao R, Chan SK, Strugnell SS, Bugis S, Irvine R, Anderson D, Walker B, Jones SJ, Wiseman SM. Hemithyroidectomy is the preferred initial operative approach for an indeterminate fine needle aspiration biopsy diagnosis. Canadian Journal of Surgery. Journal Canadien De Chirurgie. 55: 191-8. PMID 22630062 DOI: 10.1503/cjs.034510  0.32
2012 Doherty D, Chudley AE, Coghlan G, Ishak GE, Innes AM, Lemire EG, Rogers RC, Mhanni AA, Phelps IG, Jones SJ, Zhan SH, Fejes AP, Shahin H, Kanaan M, Akay H, et al. GPSM2 mutations cause the brain malformations and hearing loss in Chudley-McCullough syndrome. American Journal of Human Genetics. 90: 1088-93. PMID 22578326 DOI: 10.1016/j.ajhg.2012.06.002  0.32
2012 Chen K, Wallis JW, Kandoth C, Kalicki-Veizer JM, Mungall KL, Mungall AJ, Jones SJ, Marra MA, Ley TJ, Mardis ER, Wilson RK, Weinstein JN, Ding L. BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. Bioinformatics (Oxford, England). 28: 1923-4. PMID 22563071 DOI: 10.1093/bioinformatics/bts272  0.32
2012 Keeling CI, Henderson H, Li M, Yuen M, Clark EL, Fraser JD, Huber DP, Liao NY, Docking TR, Birol I, Chan SK, Taylor GA, Palmquist D, Jones SJ, Bohlmann J. Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests. Insect Biochemistry and Molecular Biology. 42: 525-36. PMID 22516182 DOI: 10.1016/j.ibmb.2012.03.010  0.32
2012 Shankar J, Wiseman SM, Meng F, Kasaian K, Strugnell S, Mofid A, Gown A, Jones SJ, Nabi IR. Coordinated expression of galectin-3 and caveolin-1 in thyroid cancer. The Journal of Pathology. 228: 56-66. PMID 22513979 DOI: 10.1002/path.4041  0.32
2012 Chiu CG, Chan SK, Fang ZA, Masoudi H, Wood-Baker R, Jones SJ, Gilks B, Laskin J, Wiseman SM. Beta-catenin expression is prognostic of improved non-small cell lung cancer survival. American Journal of Surgery. 203: 654-9. PMID 22402266 DOI: 10.1016/j.amjsurg.2012.01.002  0.32
2012 Wu C, Wyatt AW, Lapuk AV, McPherson A, McConeghy BJ, Bell RH, Anderson S, Haegert A, Brahmbhatt S, Shukin R, Mo F, Li E, Fazli L, Hurtado-Coll A, Jones EC, ... ... Jones SJ, et al. Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer. The Journal of Pathology. 227: 53-61. PMID 22294438 DOI: 10.1002/path.3987  0.32
2012 Chu JS, Johnsen RC, Chua SY, Tu D, Dennison M, Marra M, Jones SJ, Baillie DL, Rose AM. Allelic ratios and the mutational landscape reveal biologically significant heterozygous SNVs. Genetics. 190: 1225-33. PMID 22267497 DOI: 10.1534/genetics.111.137208  0.32
2012 Lee CH, Ou WB, Mariño-Enriquez A, Zhu M, Mayeda M, Wang Y, Guo X, Brunner AL, Amant F, French CA, West RB, McAlpine JN, Gilks CB, Yaffe MB, Prentice LM, ... ... Jones SJ, et al. 14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma. Proceedings of the National Academy of Sciences of the United States of America. 109: 929-34. PMID 22223660 DOI: 10.1073/pnas.1115528109  0.32
2012 Heravi-Moussavi A, Anglesio MS, Cheng SW, Senz J, Yang W, Prentice L, Fejes AP, Chow C, Tone A, Kalloger SE, Hamel N, Roth A, Ha G, Wan AN, Maines-Bandiera S, ... ... Jones SJ, et al. Recurrent somatic DICER1 mutations in nonepithelial ovarian cancers. The New England Journal of Medicine. 366: 234-42. PMID 22187960 DOI: 10.1056/NEJMoa1102903  0.32
2012 Gibson WT, Hood RL, Zhan SH, Bulman DE, Fejes AP, Moore R, Mungall AJ, Eydoux P, Babul-Hirji R, An J, Marra MA, Chitayat D, Boycott KM, Weaver DD, ... Jones SJ, et al. Mutations in EZH2 cause Weaver syndrome. American Journal of Human Genetics. 90: 110-8. PMID 22177091 DOI: 10.1016/j.ajhg.2011.11.018  0.32
2012 Krzywinski M, Birol I, Jones SJ, Marra MA. Hive plots-rational approach to visualizing networks Briefings in Bioinformatics. 13: 627-644. PMID 22155641 DOI: 10.1093/bib/bbr069  0.32
2011 Wiseman SM, Griffith OL, Gown A, Walker B, Jones SJM. Immunophenotyping of thyroid tumors identifies molecular markers altered during transformation of differentiated into anaplastic carcinoma American Journal of Surgery. 201: 578-584. PMID 21545903 DOI: 10.1016/j.amjsurg.2011.01.010  0.32
2011 Fejes AP, Khodabakhshi AH, Birol I, Jones SJM. Human variation database: An open-source database template for genomic discovery Bioinformatics. 27: 1155-1156. PMID 21367872 DOI: 10.1093/bioinformatics/btr100  0.32
2010 McLarren KW, Severson TM, du Souich C, Stockton DW, Kratz LE, Cunningham D, Hendson G, Morin RD, Wu D, Paul JE, An J, Nelson TN, Chou A, DeBarber AE, Merkens LS, ... ... Jones SJ, et al. Hypomorphic temperature-sensitive alleles of NSDHL cause CK syndrome. American Journal of Human Genetics. 87: 905-14. PMID 21129721 DOI: 10.1016/j.ajhg.2010.11.004  0.32
2010 Griffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan SY, ... ... Jones SJ, et al. Alternative expression analysis by RNA sequencing. Nature Methods. 7: 843-7. PMID 20835245 DOI: 10.1038/nmeth.1503  0.32
2010 Portales-Casamar E, Swanson DJ, Liu L, de Leeuw CN, Banks KG, Ho Sui SJ, Fulton DL, Ali J, Amirabbasi M, Arenillas DJ, Babyak N, Black SF, Bonaguro RJ, Brauer E, Candido TR, ... ... Jones SJ, et al. A regulatory toolbox of MiniPromoters to drive selective expression in the brain. Proceedings of the National Academy of Sciences of the United States of America. 107: 16589-94. PMID 20807748 DOI: 10.1073/pnas.1009158107  0.32
2010 Hoffman BG, Robertson G, Zavaglia B, Beach M, Cullum R, Lee S, Soukhatcheva G, Li L, Wederell ED, Thiessen N, Bilenky M, Cezard T, Tam A, Kamoh B, Birol I, ... ... Jones SJ, et al. Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver. Genome Research. 20: 1037-51. PMID 20551221 DOI: 10.1101/gr.104356.109  0.32
2010 Flibotte S, Edgley ML, Chaudhry I, Taylor J, Neil SE, Rogula A, Zapf R, Hirst M, Butterfield Y, Jones SJ, Marra MA, Barstead RJ, Moerman DG. Whole-genome profiling of mutagenesis in Caenorhabditis elegans. Genetics. 185: 431-41. PMID 20439774 DOI: 10.1534/genetics.110.116616  0.32
2009 Nielsen CB, Jackman SD, Birol I, Jones SJM. ABySS-explorer: Visualizing genome sequence assemblies Ieee Transactions On Visualization and Computer Graphics. 15: 881-888. PMID 19834150 DOI: 10.1109/TVCG.2009.116  0.32
2009 Sleumer MC, Bilenky M, He A, Robertson G, Thiessen N, Jones SJ. Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements. Nucleic Acids Research. 37: 1323-34. PMID 19151087 DOI: 10.1093/nar/gkn1041  0.32
2009 Griffith OL, Gao BJ, Bilenky M, Prychyna Y, Ester M, Jones SJM. KiWi: A scalable subspace clustering algorithm for gene expression analysis 3rd International Conference On Bioinformatics and Biomedical Engineering, Icbbe 2009. DOI: 10.1109/ICBBE.2009.5163005  0.32
2008 Robertson AG, Bilenky M, Tam A, Zhao Y, Zeng T, Thiessen N, Cezard T, Fejes AP, Wederell ED, Cullum R, Euskirchen G, Krzywinski M, Birol I, Snyder M, Hoodless PA, ... ... Jones SJM, et al. Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding Genome Research. 18: 1906-1917. PMID 18787082 DOI: 10.1101/gr.078519.108  0.32
2008 Griffith OL, Chiu CG, Gown AM, Jones SJM, Wiseman SM. Biomarker panel diagnosis of thyroid cancer: A critical review Expert Review of Anticancer Therapy. 8: 1399-1413. PMID 18759692 DOI: 10.1586/14737140.8.9.1399  0.32
2008 Griffith M, Tang MJ, Griffith OL, Morin RD, Chan SY, Asano JK, Zeng T, Flibotte S, Ally A, Baross A, Hirst M, Jones SJM, Morin GB, Tai IT, Marra MA. ALEXA: A microarray design platform for alternative expression analysis [3] Nature Methods. 5: 118. PMID 18235430 DOI: 10.1038/nmeth0208-118  0.32
2008 Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M, Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, ... ... Jones SJ, et al. ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Research. 36: D107-13. PMID 18006570 DOI: 10.1093/nar/gkm967  0.32
2007 Montgomery SB, Griffith OL, Schuetz JM, Brooks-Wilson A, Jones SJM. A survey of genomic properties for the detection of regulatory polymorphisms Plos Computational Biology. 3: 1000-1010. PMID 17559298 DOI: 10.1371/journal.pcbi.0030106  0.32
2007 Ruzanov P, Riddle DL, Marra MA, McKay SJ, Jones SM. Genes that may modulate longevity in C. elegans in both dauer larvae and long-lived daf-2 adults. Experimental Gerontology. 42: 825-39. PMID 17543485 DOI: 10.1016/j.exger.2007.04.002  0.32
2006 Griffith OL, Melck A, Jones SJM, Wiseman SM. Meta-analysis and meta-review of thyroid cancer gene expression profiling studies identifies important diagnostic biomarkers Journal of Clinical Oncology. 24: 5043-5051. PMID 17075124 DOI: 10.1200/JCO.2006.06.7330  0.32
2006 Siddiqui AS, Delaney AD, Schnerch A, Griffith OL, Jones SJM, Marra MA. Sequence biases in large scale gene expression profiling data Nucleic Acids Research. 34: e83. PMID 16840527 DOI: 10.1093/nar/gkl404  0.32
2006 Montgomery SB, Griffith OL, Sleumer MC, Bergman CM, Bilenky M, Pleasance ED, Prychyna Y, Zhang X, Jones SJ. ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics (Oxford, England). 22: 637-40. PMID 16397004 DOI: 10.1093/bioinformatics/btk027  0.32
2005 Siddiqui AS, Khattra J, Delaney AD, Zhao Y, Astell C, Asano J, Babakaiff R, Barber S, Beland J, Bohacec S, Brown-John M, Chand S, Charest D, Charters AM, Cullum R, ... ... Jones SJ, et al. A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proceedings of the National Academy of Sciences of the United States of America. 102: 18485-90. PMID 16352711 DOI: 10.1073/pnas.0509455102  0.32
2002 Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, ... ... Jones SJ, et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 16899-903. PMID 12477932 DOI: 10.1073/pnas.242603899  0.32
2002 Brinkman FS, Blanchard JL, Cherkasov A, Av-Gay Y, Brunham RC, Fernandez RC, Finlay BB, Otto SP, Ouellette BF, Keeling PJ, Rose AM, Hancock RE, Jones SJ, Greberg H. Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast. Genome Research. 12: 1159-67. PMID 12176923 DOI: 10.1101/gr.341802  0.32
Show low-probability matches.