Tomomi Shimogori - Publications

Affiliations: 
RIKEN 

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Peng J, Fabre PJ, Dolique T, Swikert SM, Kermasson L, Shimogori T, Charron F. Sonic Hedgehog Is a Remotely Produced Cue that Controls Axon Guidance Trans-axonally at a Midline Choice Point. Neuron. 97: 326-340.e4. PMID 29346753 DOI: 10.1016/j.neuron.2017.12.028  1
2017 Shimogori T, Abe A, Go Y, Hashikawa T, Kishi N, Kikuchi SS, Kita Y, Niimi K, Nishibe H, Okuno M, Saga K, Sakurai M, Sato M, Serizawa T, Suzuki S, et al. Digital gene atlas of neonate common marmoset brain. Neuroscience Research. PMID 29111135 DOI: 10.1016/j.neures.2017.10.009  0.32
2016 Yamanaka T, Tosaki A, Miyazaki H, Kurosawa M, Koike M, Uchiyama Y, Maity SN, Misawa H, Takahashi R, Shimogori T, Hattori N, Nukina N. Differential roles of NF-Y transcription factor in ER chaperone expression and neuronal maintenance in the CNS. Scientific Reports. 6: 34575. PMID 27687130 DOI: 10.1038/srep34575  1
2016 Minoura I, Takazaki H, Ayukawa R, Saruta C, Hachikubo Y, Uchimura S, Hida T, Kamiguchi H, Shimogori T, Muto E. Reversal of axonal growth defects in an extraocular fibrosis model by engineering the kinesin-microtubule interface. Nature Communications. 7: 10058. PMID 26775887 DOI: 10.1038/ncomms10058  1
2016 Yamanaka T, Tosaki A, Kurosawa M, Shimogori T, Hattori N, Nukina N. Genome-wide analyses in neuronal cells reveal that USF transcription factors regulate lysosomal gene expression. The Febs Journal. PMID 26756308 DOI: 10.1111/febs.13650  1
2015 Prochazka J, Prochazkova M, Du W, Spoutil F, Tureckova J, Hoch R, Shimogori T, Sedlacek R, Rubenstein JL, Wittmann T, Klein OD. Migration of Founder Epithelial Cells Drives Proper Molar Tooth Positioning and Morphogenesis. Developmental Cell. 35: 713-24. PMID 26702830 DOI: 10.1016/j.devcel.2015.11.025  1
2015 Shimogori T. [Molecular mechanisms for cortical area map formation and activity dependent dendrite formation]. Seikagaku. the Journal of Japanese Biochemical Society. 87: 133-7. PMID 26571568  1
2015 Kurosawa M, Matsumoto G, Sumikura H, Hatsuta H, Murayama S, Sakurai T, Shimogori T, Hattori N, Nukina N. Serine 403-phosphorylated p62/SQSTM1 immunoreactivity in inclusions of neurodegenerative diseases. Neuroscience Research. PMID 26302676 DOI: 10.1016/j.neures.2015.08.002  1
2015 Oomoto I, Suzuki-Hirano A, Umeshima H, Han YW, Yanagisawa H, Carlton P, Harada Y, Kengaku M, Okamoto A, Shimogori T, Wang DO. ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues. Nucleic Acids Research. 43: e126. PMID 26101260 DOI: 10.1093/nar/gkv614  1
2015 Liu J, Merkle FT, Gandhi AV, Gagnon JA, Woods IG, Chiu CN, Shimogori T, Schier AF, Prober DA. Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9. Development (Cambridge, England). 142: 1113-24. PMID 25725064 DOI: 10.1242/dev.117424  1
2015 Kurosawa M, Matsumoto G, Kino Y, Okuno M, Kurosawa-Yamada M, Washizu C, Taniguchi H, Nakaso K, Yanagawa T, Warabi E, Shimogori T, Sakurai T, Hattori N, Nukina N. Depletion of p62 reduces nuclear inclusions and paradoxically ameliorates disease phenotypes in Huntington's model mice. Human Molecular Genetics. 24: 1092-105. PMID 25305080 DOI: 10.1093/hmg/ddu522  1
2015 Shimogori T, Blackshaw S. Large-scale ISH on mouse brain sections for systematic gene expression analysis in developing mouse diencephalon Neuromethods. 99: 207-220. DOI: 10.1007/978-1-4939-2303-8_10  1
2014 Golding B, Pouchelon G, Bellone C, Murthy S, Di Nardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D. Retinal Input Directs the Recruitment of Inhibitory Interneurons into Thalamic Visual Circuits. Neuron. 81: 1443. PMID 28898634 DOI: 10.1016/j.neuron.2014.03.005  0.32
2014 Miyazaki H, Oyama F, Inoue R, Aosaki T, Abe T, Kiyonari H, Kino Y, Kurosawa M, Shimizu J, Ogiwara I, Yamakawa K, Koshimizu Y, Fujiyama F, Kaneko T, Shimizu H, ... ... Shimogori T, et al. Singular localization of sodium channel β4 subunit in unmyelinated fibres and its role in the striatum. Nature Communications. 5: 5525. PMID 25413837 DOI: 10.1038/ncomms6525  1
2014 Caballero IM, Manuel MN, Molinek M, Quintana-Urzainqui I, Mi D, Shimogori T, Price DJ. Cell-autonomous repression of Shh by transcription factor Pax6 regulates diencephalic patterning by controlling the central diencephalic organizer. Cell Reports. 8: 1405-18. PMID 25176648 DOI: 10.1016/j.celrep.2014.07.051  1
2014 Yamanaka T, Wong HK, Tosaki A, Bauer PO, Wada K, Kurosawa M, Shimogori T, Hattori N, Nukina N. Large-scale RNA interference screening in mammalian cells identifies novel regulators of mutant huntingtin aggregation. Plos One. 9: e93891. PMID 24705917 DOI: 10.1371/journal.pone.0093891  1
2014 Golding B, Pouchelon G, Bellone C, Murthy S, Di Nardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D. Retinal input directs the recruitment of inhibitory interneurons into thalamic visual circuits. Neuron. 81: 1057-69. PMID 24607228 DOI: 10.1016/j.neuron.2014.01.032  1
2014 Yamanaka T, Tosaki A, Kurosawa M, Matsumoto G, Koike M, Uchiyama Y, Maity SN, Shimogori T, Hattori N, Nukina N. NF-Y inactivation causes atypical neurodegeneration characterized by ubiquitin and p62 accumulation and endoplasmic reticulum disorganization. Nature Communications. 5: 3354. PMID 24566496 DOI: 10.1038/ncomms4354  1
2014 Golding B, Pouchelon G, Bellone C, Murthy S, DiNardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D. Retinal input directs the recruitment of inhibitory interneurons into thalamic visual circuits Neuron. 81: 1443. DOI: 10.1016/j.neuron.2014.03.005  1
2013 Forni PE, Bharti K, Flannery EM, Shimogori T, Wray S. The indirect role of fibroblast growth factor-8 in defining neurogenic niches of the olfactory/GnRH systems. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 19620-34. PMID 24336726 DOI: 10.1523/JNEUROSCI.3238-13.2013  1
2013 Matsui A, Tran M, Yoshida AC, Kikuchi SS, U M, Ogawa M, Shimogori T. BTBD3 controls dendrite orientation toward active axons in mammalian neocortex. Science (New York, N.Y.). 342: 1114-8. PMID 24179155 DOI: 10.1126/science.1244505  1
2013 Kumagai A, Ando R, Miyatake H, Greimel P, Kobayashi T, Hirabayashi Y, Shimogori T, Miyawaki A. A bilirubin-inducible fluorescent protein from eel muscle. Cell. 153: 1602-11. PMID 23768684 DOI: 10.1016/j.cell.2013.05.038  1
2013 Scholpp S, Shimogori T. Building the gateway to consciousness-about the development of the thalamus. Frontiers in Neuroscience. 7: 94. PMID 23760777 DOI: 10.3389/fnins.2013.00094  1
2013 Huilgol D, Udin S, Shimogori T, Saha B, Roy A, Aizawa S, Hevner RF, Meyer G, Ohshima T, Pleasure SJ, Zhao Y, Tole S. Dual origins of the mammalian accessory olfactory bulb revealed by an evolutionarily conserved migratory stream. Nature Neuroscience. 16: 157-65. PMID 23292680 DOI: 10.1038/nn.3297  1
2012 Nakanishi A, Kobayashi N, Suzuki-Hirano A, Nishihara H, Sasaki T, Hirakawa M, Sumiyama K, Shimogori T, Okada N. A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8. Plos One. 7: e43785. PMID 22937095 DOI: 10.1371/journal.pone.0043785  1
2012 Nakagawa Y, Shimogori T. Diversity of thalamic progenitor cells and postmitotic neurons. The European Journal of Neuroscience. 35: 1554-62. PMID 22607001 DOI: 10.1111/j.1460-9568.2012.08089.x  1
2012 Mashiko H, Yoshida AC, Kikuchi SS, Niimi K, Takahashi E, Aruga J, Okano H, Shimogori T. Comparative anatomy of marmoset and mouse cortex from genomic expression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 5039-53. PMID 22496550 DOI: 10.1523/JNEUROSCI.4788-11.2012  1
2012 Chiara F, Badaloni A, Croci L, Yeh ML, Cariboni A, Hoerder-Suabedissen A, Consalez GG, Eickholt B, Shimogori T, Parnavelas JG, Rakić S. Early B-cell factors 2 and 3 (EBF2/3) regulate early migration of Cajal-Retzius cells from the cortical hem. Developmental Biology. 365: 277-89. PMID 22421355 DOI: 10.1016/j.ydbio.2012.02.034  1
2011 Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H, Fukami K, Sakaue-Sawano A, Miyawaki A. Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nature Neuroscience. 14: 1481-8. PMID 21878933 DOI: 10.1038/nn.2928  1
2011 Matsui A, Yoshida AC, Kubota M, Ogawa M, Shimogori T. Mouse in utero electroporation: controlled spatiotemporal gene transfection. Journal of Visualized Experiments : Jove. PMID 21860382 DOI: 10.3791/3024  1
2011 Yuge K, Kataoka A, Yoshida AC, Itoh D, Aggarwal M, Mori S, Blackshaw S, Shimogori T. Region-specific gene expression in early postnatal mouse thalamus. The Journal of Comparative Neurology. 519: 544-61. PMID 21192083 DOI: 10.1002/cne.22532  1
2011 Suzuki-Hirano A, Ogawa M, Kataoka A, Yoshida AC, Itoh D, Ueno M, Blackshaw S, Shimogori T. Dynamic spatiotemporal gene expression in embryonic mouse thalamus. The Journal of Comparative Neurology. 519: 528-43. PMID 21192082 DOI: 10.1002/cne.22531  1
2010 Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, Shimogori T. Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14925-30. PMID 21068293 DOI: 10.1523/JNEUROSCI.4499-10.2010  1
2010 Toyoda R, Assimacopoulos S, Wilcoxon J, Taylor A, Feldman P, Suzuki-Hirano A, Shimogori T, Grove EA. FGF8 acts as a classic diffusible morphogen to pattern the neocortex. Development (Cambridge, England). 137: 3439-48. PMID 20843859 DOI: 10.1242/dev.055392  1
2010 Okada N, Sasaki T, Shimogori T, Nishihara H. Emergence of mammals by emergency: exaptation. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 15: 801-12. PMID 20633052 DOI: 10.1111/j.1365-2443.2010.01429.x  1
2010 Aggarwal M, Mori S, Shimogori T, Blackshaw S, Zhang J. Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain. Magnetic Resonance in Medicine. 64: 249-61. PMID 20577980 DOI: 10.1002/mrm.22426  1
2010 Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Wang H, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, Blackshaw S. A genomic atlas of mouse hypothalamic development. Nature Neuroscience. 13: 767-75. PMID 20436479 DOI: 10.1038/nn.2545  1
2010 Fabre PJ, Shimogori T, Charron F. Segregation of ipsilateral retinal ganglion cell axons at the optic chiasm requires the Shh receptor Boc. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 266-75. PMID 20053908 DOI: 10.1523/JNEUROSCI.3778-09.2010  1
2009 Suzuki-Hirano A, Shimogori T. The role of Fgf8 in telencephalic and diencephalic patterning. Seminars in Cell & Developmental Biology. 20: 719-25. PMID 19596327 DOI: 10.1016/j.semcdb.2009.04.002  1
2009 Shimogori T, Ogawa M. Practical application of microelectroporation into developing mouse brain Electroporation and Sonoporation in Developmental Biology. 153-167. DOI: 10.1007/978-4-431-09427-2_15  1
2008 Kinameri E, Inoue T, Aruga J, Imayoshi I, Kageyama R, Shimogori T, Moore AW. Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis. Plos One. 3: e3859. PMID 19050759 DOI: 10.1371/journal.pone.0003859  1
2008 Kataoka A, Shimogori T. Fgf8 controls regional identity in the developing thalamus. Development (Cambridge, England). 135: 2873-81. PMID 18653561 DOI: 10.1242/dev.021618  1
2008 Imayoshi I, Shimogori T, Ohtsuka T, Kageyama R. Hes genes and neurogenin regulate non-neural versus neural fate specification in the dorsal telencephalic midline. Development (Cambridge, England). 135: 2531-41. PMID 18579678 DOI: 10.1242/dev.021535  1
2008 Shimogori T. [Patterning of the neocortex and the thalamus for correct wiring]. No to Hattatsu. Brain and Development. 40: 221-7. PMID 18524255  1
2008 Shimogori T, Ogawa M. Gene application with in utero electroporation in mouse embryonic brain. Development, Growth & Differentiation. 50: 499-506. PMID 18482402 DOI: 10.1111/j.1440-169X.2008.01045.x  1
2008 Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, Kokubo N, Kimura-Yoshida C, Matsuo I, Sumiyama K, Saitou N, Shimogori T, Okada N. Possible involvement of SINEs in mammalian-specific brain formation. Proceedings of the National Academy of Sciences of the United States of America. 105: 4220-5. PMID 18334644 DOI: 10.1073/pnas.0709398105  1
2005 Shimogori T, Grove EA. Fibroblast growth factor 8 regulates neocortical guidance of area-specific thalamic innervation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 6550-60. PMID 16014716 DOI: 10.1523/JNEUROSCI.0453-05.2005  1
2004 Shimogori T, Banuchi V, Ng HY, Strauss JB, Grove EA. Embryonic signaling centers expressing BMP, WNT and FGF proteins interact to pattern the cerebral cortex. Development (Cambridge, England). 131: 5639-47. PMID 15509764 DOI: 10.1242/dev.01428  1
2004 Shimogori T, VanSant J, Paik E, Grove EA. Members of the Wnt, Fz, and Frp gene families expressed in postnatal mouse cerebral cortex. The Journal of Comparative Neurology. 473: 496-510. PMID 15116386 DOI: 10.1002/cne.20135  1
1999 Iwata S, Sato Y, Asada M, Takagi M, Tsujimoto A, Inaba T, Yamada T, Sakamoto S, Yata J, Shimogori T, Igarashi K, Mizutani S. Anti-tumor activity of antizyme which targets the ornithine decarboxylase (ODC) required for cell growth and transformation. Oncogene. 18: 165-72. PMID 9926931 DOI: 10.1038/sj.onc.1202275  1
1998 Shibata M, Shinga J, Yasuhiko Y, Kai M, Miura K, Shimogori T, Kashiwagi K, Igarashi K, Shiokawa K. Overexpression of S-adenosylmethionine decarboxylase (SAMDC) in early Xenopus embryos induces cell dissociation and inhibits transition from the blastula to gastrula stage. The International Journal of Developmental Biology. 42: 675-86. PMID 9712522  1
1996 Shimogori T, Kashiwagi K, Igarashi K. Spermidine regulation of protein synthesis at the level of initiation complex formation of Met-tRNAi, mRNA and ribosomes. Biochemical and Biophysical Research Communications. 223: 544-8. PMID 8687432 DOI: 10.1006/bbrc.1996.0931  1
1996 Shimogori T, Suzuki T, Kashiwagi K, Kakinuma Y, Igarashi K. Enhancement of helicase activity and increase of eIF-4E phosphorylation in ornithine decarboxylase-overproducing cells. Biochemical and Biophysical Research Communications. 222: 748-52. PMID 8651916 DOI: 10.1006/bbrc.1996.0815  1
1995 Igarashi K, Koga K, He Y, Shimogori T, Ekimoto H, Kashiwagi K, Shirahata A. Inhibition of the growth of various human and mouse tumor cells by 1,15-bis(ethylamino)-4,8,12-triazapentadecane. Cancer Research. 55: 2615-9. PMID 7780977  1
1995 He Y, Shimogori T, Kashiwagi K, Shirahata A, Igarashi K. Inhibition of cell growth by combination of alpha-difluoromethylornithine and an inhibitor of spermine synthase. Journal of Biochemistry. 117: 824-9. PMID 7592545  1
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