Tomomi Shimogori - Publications

Affiliations: 
RIKEN 

33/94 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Onishi K, Kikuchi SS, Abe T, Tokuhara T, Shimogori T. Molecular cell identities in the mediodorsal thalamus of infant mice and marmoset. The Journal of Comparative Neurology. PMID 34184265 DOI: 10.1002/cne.25203  0.337
2021 Kita Y, Nishibe H, Wang Y, Hashikawa T, Kikuchi SS, U M, Yoshida AC, Yoshida C, Kawase T, Ishii S, Skibbe H, Shimogori T. Cellular-resolution gene expression profiling in the neonatal marmoset brain reveals dynamic species- and region-specific differences. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33903237 DOI: 10.1073/pnas.2020125118  0.344
2021 Jager P, Moore G, Calpin P, Durmishi X, Salgarella I, Menage L, Kita Y, Wang Y, Kim DW, Blackshaw S, Schultz SR, Brickley S, Shimogori T, Delogu A. Dual midbrain and forebrain origins of thalamic inhibitory interneurons. Elife. 10. PMID 33522480 DOI: 10.7554/eLife.59272  0.503
2021 Kim DW, Liu K, Wang ZQ, Zhang YS, Bathini A, Brown MP, Lin SH, Washington PW, Sun C, Lindtner S, Lee B, Wang H, Shimogori T, Rubenstein JLR, Blackshaw S. Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons. Communications Biology. 4: 95. PMID 33479483 DOI: 10.1038/s42003-020-01616-7  0.484
2020 Murayama AY, Kuwako KI, Okahara J, Bae BI, Okuno M, Mashiko H, Shimogori T, Walsh CA, Sasaki E, Okano H. The polymicrogyria-associated GPR56 promoter preferentially drives gene expression in developing GABAergic neurons in common marmosets. Scientific Reports. 10: 21516. PMID 33299078 DOI: 10.1038/s41598-020-78608-4  0.317
2019 Arai Y, Cwetsch AW, Coppola E, Cipriani S, Nishihara H, Kanki H, Saillour Y, Freret-Hodara B, Dutriaux A, Okada N, Okano H, Dehay C, Nardelli J, Gressens P, Shimogori T, et al. Evolutionary Gain of Dbx1 Expression Drives Subplate Identity in the Cerebral Cortex. Cell Reports. 29: 645-658.e5. PMID 31618633 DOI: 10.1016/J.Celrep.2019.09.007  0.319
2018 Peng J, Fabre PJ, Dolique T, Swikert SM, Kermasson L, Shimogori T, Charron F. Sonic Hedgehog Is a Remotely Produced Cue that Controls Axon Guidance Trans-axonally at a Midline Choice Point. Neuron. 97: 326-340.e4. PMID 29346753 DOI: 10.1016/J.Neuron.2017.12.028  0.531
2017 Watson C, Shimogori T, Puelles L. Mouse Fgf8-Cre-LacZ lineage analysis defines the territory of the postnatal mammalian isthmus. The Journal of Comparative Neurology. PMID 28510270 DOI: 10.1002/cne.24242  0.331
2017 Kawata M, Taniguchi Y, Mori D, Yano F, Ohba S, Chung UI, Shimogori T, Mills AA, Tanaka S, Saito T. Different regulation of limb development by p63 transcript variants. Plos One. 12: e0174122. PMID 28333962 DOI: 10.1371/journal.pone.0174122  0.311
2016 Yamanaka T, Tosaki A, Kurosawa M, Shimogori T, Hattori N, Nukina N. Genome-wide analyses in neuronal cells reveal that USF transcription factors regulate lysosomal gene expression. The Febs Journal. PMID 26756308 DOI: 10.1111/Febs.13650  0.31
2015 Shimogori T, Blackshaw S. Large-scale ISH on mouse brain sections for systematic gene expression analysis in developing mouse diencephalon Neuromethods. 99: 207-220. DOI: 10.1007/978-1-4939-2303-8_10  0.484
2014 Caballero IM, Manuel MN, Molinek M, Quintana-Urzainqui I, Mi D, Shimogori T, Price DJ. Cell-autonomous repression of Shh by transcription factor Pax6 regulates diencephalic patterning by controlling the central diencephalic organizer. Cell Reports. 8: 1405-18. PMID 25176648 DOI: 10.1016/J.Celrep.2014.07.051  0.306
2013 Forni PE, Bharti K, Flannery EM, Shimogori T, Wray S. The indirect role of fibroblast growth factor-8 in defining neurogenic niches of the olfactory/GnRH systems. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 19620-34. PMID 24336726 DOI: 10.1523/JNEUROSCI.3238-13.2013  0.317
2013 Matsui A, Tran M, Yoshida AC, Kikuchi SS, U M, Ogawa M, Shimogori T. BTBD3 controls dendrite orientation toward active axons in mammalian neocortex. Science (New York, N.Y.). 342: 1114-8. PMID 24179155 DOI: 10.1126/science.1244505  0.325
2013 Scholpp S, Shimogori T. Building the gateway to consciousness-about the development of the thalamus. Frontiers in Neuroscience. 7: 94. PMID 23760777 DOI: 10.3389/Fnins.2013.00094  0.313
2013 Huilgol D, Udin S, Shimogori T, Saha B, Roy A, Aizawa S, Hevner RF, Meyer G, Ohshima T, Pleasure SJ, Zhao Y, Tole S. Dual origins of the mammalian accessory olfactory bulb revealed by an evolutionarily conserved migratory stream. Nature Neuroscience. 16: 157-65. PMID 23292680 DOI: 10.1038/Nn.3297  0.554
2012 Nakagawa Y, Shimogori T. Diversity of thalamic progenitor cells and postmitotic neurons. The European Journal of Neuroscience. 35: 1554-62. PMID 22607001 DOI: 10.1111/J.1460-9568.2012.08089.X  0.313
2012 Mashiko H, Yoshida AC, Kikuchi SS, Niimi K, Takahashi E, Aruga J, Okano H, Shimogori T. Comparative anatomy of marmoset and mouse cortex from genomic expression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 5039-53. PMID 22496550 DOI: 10.1523/Jneurosci.4788-11.2012  0.343
2011 Matsui A, Yoshida AC, Kubota M, Ogawa M, Shimogori T. Mouse in utero electroporation: controlled spatiotemporal gene transfection. Journal of Visualized Experiments : Jove. PMID 21860382 DOI: 10.3791/3024  0.306
2011 Yuge K, Kataoka A, Yoshida AC, Itoh D, Aggarwal M, Mori S, Blackshaw S, Shimogori T. Region-specific gene expression in early postnatal mouse thalamus. The Journal of Comparative Neurology. 519: 544-61. PMID 21192083 DOI: 10.1002/Cne.22532  0.574
2011 Suzuki-Hirano A, Ogawa M, Kataoka A, Yoshida AC, Itoh D, Ueno M, Blackshaw S, Shimogori T. Dynamic spatiotemporal gene expression in embryonic mouse thalamus. The Journal of Comparative Neurology. 519: 528-43. PMID 21192082 DOI: 10.1002/Cne.22531  0.624
2010 Blackshaw S, Scholpp S, Placzek M, Ingraham H, Simerly R, Shimogori T. Molecular pathways controlling development of thalamus and hypothalamus: from neural specification to circuit formation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14925-30. PMID 21068293 DOI: 10.1523/Jneurosci.4499-10.2010  0.534
2010 Toyoda R, Assimacopoulos S, Wilcoxon J, Taylor A, Feldman P, Suzuki-Hirano A, Shimogori T, Grove EA. FGF8 acts as a classic diffusible morphogen to pattern the neocortex. Development (Cambridge, England). 137: 3439-48. PMID 20843859 DOI: 10.1242/Dev.055392  0.635
2010 Aggarwal M, Mori S, Shimogori T, Blackshaw S, Zhang J. Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain. Magnetic Resonance in Medicine. 64: 249-61. PMID 20577980 DOI: 10.1002/Mrm.22426  0.456
2010 Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Wang H, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, Blackshaw S. A genomic atlas of mouse hypothalamic development. Nature Neuroscience. 13: 767-75. PMID 20436479 DOI: 10.1038/Nn.2545  0.537
2010 Fabre PJ, Shimogori T, Charron F. Segregation of ipsilateral retinal ganglion cell axons at the optic chiasm requires the Shh receptor Boc. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 266-75. PMID 20053908 DOI: 10.1523/Jneurosci.3778-09.2010  0.538
2009 Suzuki-Hirano A, Shimogori T. The role of Fgf8 in telencephalic and diencephalic patterning. Seminars in Cell & Developmental Biology. 20: 719-25. PMID 19596327 DOI: 10.1016/j.semcdb.2009.04.002  0.306
2008 Kinameri E, Inoue T, Aruga J, Imayoshi I, Kageyama R, Shimogori T, Moore AW. Prdm proto-oncogene transcription factor family expression and interaction with the Notch-Hes pathway in mouse neurogenesis. Plos One. 3: e3859. PMID 19050759 DOI: 10.1371/journal.pone.0003859  0.357
2008 Kataoka A, Shimogori T. Fgf8 controls regional identity in the developing thalamus. Development (Cambridge, England). 135: 2873-81. PMID 18653561 DOI: 10.1242/dev.021618  0.364
2008 Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, Kokubo N, Kimura-Yoshida C, Matsuo I, Sumiyama K, Saitou N, Shimogori T, Okada N. Possible involvement of SINEs in mammalian-specific brain formation. Proceedings of the National Academy of Sciences of the United States of America. 105: 4220-5. PMID 18334644 DOI: 10.1073/Pnas.0709398105  0.35
2005 Shimogori T, Grove EA. Fibroblast growth factor 8 regulates neocortical guidance of area-specific thalamic innervation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 6550-60. PMID 16014716 DOI: 10.1523/Jneurosci.0453-05.2005  0.62
2004 Shimogori T, Banuchi V, Ng HY, Strauss JB, Grove EA. Embryonic signaling centers expressing BMP, WNT and FGF proteins interact to pattern the cerebral cortex. Development (Cambridge, England). 131: 5639-47. PMID 15509764 DOI: 10.1242/Dev.01428  0.63
2004 Shimogori T, VanSant J, Paik E, Grove EA. Members of the Wnt, Fz, and Frp gene families expressed in postnatal mouse cerebral cortex. The Journal of Comparative Neurology. 473: 496-510. PMID 15116386 DOI: 10.1002/Cne.20135  0.645
Low-probability matches (unlikely to be authored by this person)
2023 Young TR, Yamamoto M, Kikuchi SS, Yoshida AC, Abe T, Inoue K, Johansen JP, Benucci A, Yoshimura Y, Shimogori T. Thalamocortical control of cell-type specificity drives circuits for processing whisker-related information in mouse barrel cortex. Nature Communications. 14: 6077. PMID 37770450 DOI: 10.1038/s41467-023-41749-x  0.299
2017 Alchini R, Sato H, Matsumoto N, Shimogori T, Sugo N, Yamamoto N. Nucleocytoplasmic Shuttling of Histone Deacetylase 9 Controls Activity-Dependent Thalamocortical Axon Branching. Scientific Reports. 7: 6024. PMID 28729685 DOI: 10.1038/S41598-017-06243-7  0.283
2008 Imayoshi I, Shimogori T, Ohtsuka T, Kageyama R. Hes genes and neurogenin regulate non-neural versus neural fate specification in the dorsal telencephalic midline. Development (Cambridge, England). 135: 2531-41. PMID 18579678 DOI: 10.1242/dev.021535  0.283
2006 Kataoka A, Shimogori T. [P175]: Gene expression study of the mammalian thalamus during development International Journal of Developmental Neuroscience. 24: 570-570. DOI: 10.1016/j.ijdevneu.2006.09.235  0.263
2008 Shimogori T, Ogawa M. Gene application with in utero electroporation in mouse embryonic brain. Development, Growth & Differentiation. 50: 499-506. PMID 18482402 DOI: 10.1111/j.1440-169X.2008.01045.x  0.263
2020 Miyazaki H, Yamanaka T, Oyama F, Kino Y, Kurosawa M, Yamada-Kurosawa M, Yamano R, Shimogori T, Hattori N, Nukina N. FACS array-based cell purification yields a specific transcriptome of striatal medium spiny neurons in a murine Huntington disease model. The Journal of Biological Chemistry. PMID 32499373 DOI: 10.1074/Jbc.Ra120.012983  0.259
2019 Chan C, Kamiguchi H, Shimogori T. Spatially restricted long-term transgene expression in the developing skin used for studying the interaction of epidermal development and sensory innervation. Development, Growth & Differentiation. PMID 30968390 DOI: 10.1111/Dgd.12603  0.259
2022 Dumas DB, Gornati SV, Adolfs Y, Shimogori T, Pasterkamp RJ, Hoebeek FE. Anatomical Development of the Cerebellothalamic Tract in Embryonic Mice. Cells. 11. PMID 36497060 DOI: 10.3390/cells11233800  0.257
2024 Yamanaka T, Kurosawa M, Yoshida A, Shimogori T, Hiyama A, Maity SN, Hattori N, Matsui H, Nukina N. The Transcription factor NF-YA is Crucial for Neural Progenitor Maintenance during Brain Development. The Journal of Biological Chemistry. 105629. PMID 38199563 DOI: 10.1016/j.jbc.2024.105629  0.257
2011 Matsui A, Yoshida A, Shimogori T. Molecular mechanism of barrel cortex development controlled by thalamocortical axon innervation Neuroscience Research. 71: e334. DOI: 10.1016/j.neures.2011.07.1460  0.251
2012 Nakanishi A, Kobayashi N, Suzuki-Hirano A, Nishihara H, Sasaki T, Hirakawa M, Sumiyama K, Shimogori T, Okada N. A SINE-derived element constitutes a unique modular enhancer for mammalian diencephalic Fgf8. Plos One. 7: e43785. PMID 22937095 DOI: 10.1371/journal.pone.0043785  0.251
2015 Prochazka J, Prochazkova M, Du W, Spoutil F, Tureckova J, Hoch R, Shimogori T, Sedlacek R, Rubenstein JL, Wittmann T, Klein OD. Migration of Founder Epithelial Cells Drives Proper Molar Tooth Positioning and Morphogenesis. Developmental Cell. 35: 713-24. PMID 26702830 DOI: 10.1016/J.Devcel.2015.11.025  0.249
2023 Bilgic M, Wu Q, Suetsugu T, Shitamukai A, Tsunekawa Y, Shimogori T, Kadota M, Nishimura O, Kuraku S, Kiyonari H, Matsuzaki F. Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals. Elife. 12. PMID 37988289 DOI: 10.7554/eLife.91406  0.244
2012 Chiara F, Badaloni A, Croci L, Yeh ML, Cariboni A, Hoerder-Suabedissen A, Consalez GG, Eickholt B, Shimogori T, Parnavelas JG, Rakić S. Early B-cell factors 2 and 3 (EBF2/3) regulate early migration of Cajal-Retzius cells from the cortical hem. Developmental Biology. 365: 277-89. PMID 22421355 DOI: 10.1016/J.Ydbio.2012.02.034  0.232
2015 Liu J, Merkle FT, Gandhi AV, Gagnon JA, Woods IG, Chiu CN, Shimogori T, Schier AF, Prober DA. Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9. Development (Cambridge, England). 142: 1113-24. PMID 25725064 DOI: 10.1242/Dev.117424  0.217
2020 Kinoshita N, Huang AJY, McHugh TJ, Miyawaki A, Shimogori T. Diffusible GRAPHIC to visualize morphology of cells after specific cell-cell contact. Scientific Reports. 10: 14437. PMID 32879377 DOI: 10.1038/s41598-020-71474-0  0.217
2017 Shimogori T, Abe A, Go Y, Hashikawa T, Kishi N, Kikuchi SS, Kita Y, Niimi K, Nishibe H, Okuno M, Saga K, Sakurai M, Sato M, Serizawa T, Suzuki S, et al. Digital gene atlas of neonate common marmoset brain. Neuroscience Research. PMID 29111135 DOI: 10.1016/J.Neures.2017.10.009  0.215
2020 Yamanaka T, Miyazaki H, Tosaki A, Maity SN, Shimogori T, Hattori N, Nukina N. Gene expression profiling in neuronal cells identifies a different type of transcriptome modulated by NF-Y. Scientific Reports. 10: 21714. PMID 33303918 DOI: 10.1038/s41598-020-78682-8  0.214
2014 Golding B, Pouchelon G, Bellone C, Murthy S, Di Nardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D. Retinal input directs the recruitment of inhibitory interneurons into thalamic visual circuits. Neuron. 81: 1057-69. PMID 24607228 DOI: 10.1016/J.Neuron.2014.01.032  0.212
2020 Chan C, Ooashi N, Akiyama H, Fukuda T, Inoue M, Matsu-Ura T, Shimogori T, Mikoshiba K, Kamiguchi H. Inositol 1,4,5-Trisphosphate Receptor Type 3 Regulates Neuronal Growth Cone Sensitivity to Guidance Signals. Iscience. 23: 100963. PMID 32199289 DOI: 10.1016/J.Isci.2020.100963  0.199
2010 Kubota M, Shimogori T. LGI mRNA expression in the developing mouse brain Neuroscience Research. 68: e371. DOI: 10.1016/j.neures.2010.07.1643  0.199
2016 Yamanaka T, Tosaki A, Miyazaki H, Kurosawa M, Koike M, Uchiyama Y, Maity SN, Misawa H, Takahashi R, Shimogori T, Hattori N, Nukina N. Differential roles of NF-Y transcription factor in ER chaperone expression and neuronal maintenance in the CNS. Scientific Reports. 6: 34575. PMID 27687130 DOI: 10.1038/Srep34575  0.191
2018 Shimogori T. The Brain/MINDS project aimed at establishing the marmoset as a model organism for neurobiology and establishing the genetic and biochemical elements of their neural development Impact. 2018: 86-88. DOI: 10.21820/23987073.2018.3.86  0.191
2016 Minoura I, Takazaki H, Ayukawa R, Saruta C, Hachikubo Y, Uchimura S, Hida T, Kamiguchi H, Shimogori T, Muto E. Reversal of axonal growth defects in an extraocular fibrosis model by engineering the kinesin-microtubule interface. Nature Communications. 7: 10058. PMID 26775887 DOI: 10.1038/Ncomms10058  0.189
2010 Yuge K, Yoshida AC, Kikuchi S, Ogawa M, Shimogori T. Barrel formation in the somatosensory cortex by thalamocortical innervation Neuroscience Research. 68: e248. DOI: 10.1016/j.neures.2010.07.1099  0.186
2014 Yamanaka T, Wong HK, Tosaki A, Bauer PO, Wada K, Kurosawa M, Shimogori T, Hattori N, Nukina N. Large-scale RNA interference screening in mammalian cells identifies novel regulators of mutant huntingtin aggregation. Plos One. 9: e93891. PMID 24705917 DOI: 10.1371/Journal.Pone.0093891  0.186
2015 Shimogori T. [Molecular mechanisms for cortical area map formation and activity dependent dendrite formation]. Seikagaku. the Journal of Japanese Biochemical Society. 87: 133-7. PMID 26571568  0.175
2019 Kinoshita N, Huang AJY, McHugh TJ, Suzuki SC, Masai I, Kim IH, Soderling SH, Miyawaki A, Shimogori T. Genetically Encoded Fluorescent Indicator GRAPHIC Delineates Intercellular Connections. Iscience. 15: 28-38. PMID 31026667 DOI: 10.1016/J.Isci.2019.04.013  0.174
2014 Yamanaka T, Tosaki A, Kurosawa M, Matsumoto G, Koike M, Uchiyama Y, Maity SN, Shimogori T, Hattori N, Nukina N. NF-Y inactivation causes atypical neurodegeneration characterized by ubiquitin and p62 accumulation and endoplasmic reticulum disorganization. Nature Communications. 5: 3354. PMID 24566496 DOI: 10.1038/Ncomms4354  0.17
2014 Miyazaki H, Oyama F, Inoue R, Aosaki T, Abe T, Kiyonari H, Kino Y, Kurosawa M, Shimizu J, Ogiwara I, Yamakawa K, Koshimizu Y, Fujiyama F, Kaneko T, Shimizu H, ... ... Shimogori T, et al. Singular localization of sodium channel β4 subunit in unmyelinated fibres and its role in the striatum. Nature Communications. 5: 5525. PMID 25413837 DOI: 10.1038/Ncomms6525  0.166
2006 Shimogori T. Micro in utero electroporation for efficient gene targeting in mouse embryos. Csh Protocols. 2006. PMID 22485778 DOI: 10.1101/pdb.prot4447  0.154
2011 Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H, Fukami K, Sakaue-Sawano A, Miyawaki A. Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nature Neuroscience. 14: 1481-8. PMID 21878933 DOI: 10.1038/nn.2928  0.154
2023 Minegishi M, Kuchimaru T, Nishikawa K, Isagawa T, Iwano S, Iida K, Hara H, Miura S, Sato M, Watanabe S, Shiomi A, Mabuchi Y, Hamana H, Kishi H, Sato T, ... ... Shimogori T, et al. Secretory GFP reconstitution labeling of neighboring cells interrogates cell-cell interactions in metastatic niches. Nature Communications. 14: 8031. PMID 38052804 DOI: 10.1038/s41467-023-43855-2  0.15
1999 Iwata S, Sato Y, Asada M, Takagi M, Tsujimoto A, Inaba T, Yamada T, Sakamoto S, Yata J, Shimogori T, Igarashi K, Mizutani S. Anti-tumor activity of antizyme which targets the ornithine decarboxylase (ODC) required for cell growth and transformation. Oncogene. 18: 165-72. PMID 9926931 DOI: 10.1038/Sj.Onc.1202275  0.147
2008 Shimogori T. [Patterning of the neocortex and the thalamus for correct wiring]. No to Hattatsu. Brain and Development. 40: 221-7. PMID 18524255  0.145
2010 Akemann W, Mutoh H, Yoshida R, Shimogori T, Knopfel T. Optical Recording of Electrical Activity of Cortical Layer 2/3 Pyramidal Neurons Using A Genetically-Encoded Voltage Probe Biophysical Journal. 98: 214a-215a. DOI: 10.1016/J.BPJ.2009.12.1157  0.144
2022 Park H, Yamanaka T, Toyama Y, Fujita A, Doi H, Nirasawa T, Murayama S, Matsumoto N, Shimogori T, Ikegawa M, Haltia MJ, Nukina N. Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions. Acta Neuropathologica Communications. 10: 28. PMID 35246273 DOI: 10.1186/s40478-022-01333-8  0.144
2020 Takano T, Wallace JT, Baldwin KT, Purkey AM, Uezu A, Courtland JL, Soderblom EJ, Shimogori T, Maness PF, Eroglu C, Soderling SH. Chemico-genetic discovery of astrocytic control of inhibition in vivo. Nature. PMID 33177716 DOI: 10.1038/s41586-020-2926-0  0.143
2010 Okada N, Sasaki T, Shimogori T, Nishihara H. Emergence of mammals by emergency: exaptation. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 15: 801-12. PMID 20633052 DOI: 10.1111/j.1365-2443.2010.01429.x  0.142
2016 Okano H, Sasaki E, Yamamori T, Iriki A, Shimogori T, Yamaguchi Y, Kasai K, Miyawaki A. Brain/MINDS: A Japanese National Brain Project for Marmoset Neuroscience. Neuron. 92: 582-590. PMID 27809998 DOI: 10.1016/J.Neuron.2016.10.018  0.132
2016 Kino Y, Washizu C, Kurosawa M, Yamada M, Doi H, Takumi T, Adachi H, Katsuno M, Sobue G, Hicks GG, Hattori N, Shimogori T, Nukina N. FUS/TLS acts as an aggregation-dependent modifier of polyglutamine disease model mice. Scientific Reports. 6: 35236. PMID 27739513 DOI: 10.1038/Srep35236  0.123
2015 Kurosawa M, Matsumoto G, Kino Y, Okuno M, Kurosawa-Yamada M, Washizu C, Taniguchi H, Nakaso K, Yanagawa T, Warabi E, Shimogori T, Sakurai T, Hattori N, Nukina N. Depletion of p62 reduces nuclear inclusions and paradoxically ameliorates disease phenotypes in Huntington's model mice. Human Molecular Genetics. 24: 1092-105. PMID 25305080 DOI: 10.1093/Hmg/Ddu522  0.123
2009 Shimogori T, Ogawa M. Practical application of microelectroporation into developing mouse brain Electroporation and Sonoporation in Developmental Biology. 153-167. DOI: 10.1007/978-4-431-09427-2_15  0.122
2021 Balan S, Ohnishi T, Watanabe A, Ohba H, Iwayama Y, Toyoshima M, Hara T, Hisano Y, Miyasaka Y, Toyota T, Shimamoto-Mitsuyama C, Maekawa M, Numata S, Ohmori T, Shimogori T, et al. Role of an Atypical Cadherin Gene, Cdh23 in Prepulse Inhibition, and Implication of CDH23 in Schizophrenia. Schizophrenia Bulletin. PMID 33595068 DOI: 10.1093/schbul/sbab007  0.122
1998 Shibata M, Shinga J, Yasuhiko Y, Kai M, Miura K, Shimogori T, Kashiwagi K, Igarashi K, Shiokawa K. Overexpression of S-adenosylmethionine decarboxylase (SAMDC) in early Xenopus embryos induces cell dissociation and inhibits transition from the blastula to gastrula stage. The International Journal of Developmental Biology. 42: 675-86. PMID 9712522  0.121
2018 Kang S, Nakanishi Y, Kioi Y, Okuzaki D, Kimura T, Takamatsu H, Koyama S, Nojima S, Nishide M, Hayama Y, Kinehara Y, Kato Y, Nakatani T, Shimogori T, Takagi J, et al. Semaphorin 6D reverse signaling controls macrophage lipid metabolism and anti-inflammatory polarization. Nature Immunology. PMID 29777213 DOI: 10.1038/s41590-018-0108-0  0.116
2018 Okuzumi A, Kurosawa M, Hatano T, Takanashi M, Nojiri S, Fukuhara T, Yamanaka T, Miyazaki H, Yoshinaga S, Furukawa Y, Shimogori T, Hattori N, Nukina N. Rapid dissemination of alpha-synuclein seeds through neural circuits in an in-vivo prion-like seeding experiment. Acta Neuropathologica Communications. 6: 96. PMID 30231908 DOI: 10.1186/S40478-018-0587-0  0.116
2014 Golding B, Pouchelon G, Bellone C, Murthy S, Di Nardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D. Retinal Input Directs the Recruitment of Inhibitory Interneurons into Thalamic Visual Circuits. Neuron. 81: 1443. PMID 28898634 DOI: 10.1016/j.neuron.2014.03.005  0.1
2014 Golding B, Pouchelon G, Bellone C, Murthy S, DiNardo AA, Govindan S, Ogawa M, Shimogori T, Lüscher C, Dayer A, Jabaudon D. Retinal input directs the recruitment of inhibitory interneurons into thalamic visual circuits Neuron. 81: 1443. DOI: 10.1016/j.neuron.2014.03.005  0.1
2013 Kumagai A, Ando R, Miyatake H, Greimel P, Kobayashi T, Hirabayashi Y, Shimogori T, Miyawaki A. A bilirubin-inducible fluorescent protein from eel muscle. Cell. 153: 1602-11. PMID 23768684 DOI: 10.1016/j.cell.2013.05.038  0.097
1996 Shimogori T, Kashiwagi K, Igarashi K. Spermidine regulation of protein synthesis at the level of initiation complex formation of Met-tRNAi, mRNA and ribosomes. Biochemical and Biophysical Research Communications. 223: 544-8. PMID 8687432 DOI: 10.1006/bbrc.1996.0931  0.096
2023 Hata J, Nakae K, Tsukada H, Woodward A, Haga Y, Iida M, Uematsu A, Seki F, Ichinohe N, Gong R, Kaneko T, Yoshimaru D, Watakabe A, Abe H, Tani T, ... ... Shimogori T, et al. Multi-modal brain magnetic resonance imaging database covering marmosets with a wide age range. Scientific Data. 10: 221. PMID 37105968 DOI: 10.1038/s41597-023-02121-2  0.094
2015 Kino Y, Washizu C, Kurosawa M, Yamada M, Miyazaki H, Akagi T, Hashikawa T, Doi H, Takumi T, Hicks GG, Hattori N, Shimogori T, Nukina N. FUS/TLS deficiency causes behavioral and pathological abnormalities distinct from amyotrophic lateral sclerosis. Acta Neuropathologica Communications. 3: 24. PMID 25907258 DOI: 10.1186/S40478-015-0202-6  0.09
1995 He Y, Shimogori T, Kashiwagi K, Shirahata A, Igarashi K. Inhibition of cell growth by combination of alpha-difluoromethylornithine and an inhibitor of spermine synthase. Journal of Biochemistry. 117: 824-9. PMID 7592545 DOI: 10.1093/OXFORDJOURNALS.JBCHEM.A124782  0.087
2015 Kurosawa M, Matsumoto G, Sumikura H, Hatsuta H, Murayama S, Sakurai T, Shimogori T, Hattori N, Nukina N. Serine 403-phosphorylated p62/SQSTM1 immunoreactivity in inclusions of neurodegenerative diseases. Neuroscience Research. PMID 26302676 DOI: 10.1016/J.Neures.2015.08.002  0.085
2020 Yamanaka T, Nishiyama R, Shimogori T, Nukina N. Proteomics-Based Approach Identifies Altered ER Domain Properties by ALS-Linked VAPB Mutation. Scientific Reports. 10: 7610. PMID 32376919 DOI: 10.1038/S41598-020-64517-Z  0.084
2015 Oomoto I, Suzuki-Hirano A, Umeshima H, Han YW, Yanagisawa H, Carlton P, Harada Y, Kengaku M, Okamoto A, Shimogori T, Wang DO. ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues. Nucleic Acids Research. 43: e126. PMID 26101260 DOI: 10.1093/Nar/Gkv614  0.082
1995 Igarashi K, Koga K, He Y, Shimogori T, Ekimoto H, Kashiwagi K, Shirahata A. Inhibition of the growth of various human and mouse tumor cells by 1,15-bis(ethylamino)-4,8,12-triazapentadecane. Cancer Research. 55: 2615-9. PMID 7780977  0.08
2020 Wada Y, Maekawa M, Ohnishi T, Balan S, Matsuoka S, Iwamoto K, Iwayama Y, Ohba H, Watanabe A, Hisano Y, Nozaki Y, Toyota T, Shimogori T, Itokawa M, Kobayashi T, et al. Peroxisome proliferator-activated receptor α as a novel therapeutic target for schizophrenia. Ebiomedicine. 103130. PMID 33279456 DOI: 10.1016/j.ebiom.2020.103130  0.079
1996 Shimogori T, Suzuki T, Kashiwagi K, Kakinuma Y, Igarashi K. Enhancement of helicase activity and increase of eIF-4E phosphorylation in ornithine decarboxylase-overproducing cells. Biochemical and Biophysical Research Communications. 222: 748-52. PMID 8651916 DOI: 10.1006/bbrc.1996.0815  0.074
2015 Matsumoto G, Shimogori T, Hattori N, Nukina N. TBK1 controls autophagosomal engulfment of polyubiquitinated mitochondria through p62/SQSTM1 phosphorylation. Human Molecular Genetics. 24: 4429-42. PMID 25972374 DOI: 10.1093/Hmg/Ddv179  0.044
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