| Year |
Citation |
Score |
| 2020 |
Lichman BR, Godden GT, Hamilton JP, Palmer L, Kamileen MO, Zhao D, Vaillancourt B, Wood JC, Sun M, Kinser TJ, Henry LK, Rodriguez-Lopez C, Dudareva N, Soltis DE, Soltis PS, ... Buell CR, et al. The evolutionary origins of the cat attractant nepetalactone in catnip. Science Advances. 6: eaba0721. PMID 32426505 DOI: 10.1126/Sciadv.Aba0721 |
0.424 |
|
| 2020 |
Lichman BR, Godden GT, Buell CR. Gene and genome duplications in the evolution of chemodiversity: perspectives from studies of Lamiaceae. Current Opinion in Plant Biology. 55: 74-83. PMID 32344371 DOI: 10.1016/J.Pbi.2020.03.005 |
0.538 |
|
| 2019 |
Crisp PA, Hammond R, Zhou P, Vaillancourt B, Lipzen AM, Daum C, Barry KW, de Leon N, Buell CR, Kaeppler SM, Meyers BC, Hirsch C, Springer NM. Variation and inheritance of small RNAs in maize inbreds and F1 hybrids. Plant Physiology. PMID 31575624 DOI: 10.1104/Pp.19.00817 |
0.361 |
|
| 2019 |
Pham GM, Braz GT, Conway M, Crisovan E, Hamilton JP, Laimbeer FPE, Manrique-Carpintero N, Newton L, Douches DS, Jiang J, Veilleux RE, Buell CR. Genome-wide Inference of Somatic Translocation Events During Potato Dihaploid Production. The Plant Genome. 12. PMID 31290929 DOI: 10.3835/Plantgenome2018.10.0079 |
0.327 |
|
| 2019 |
Gage JL, Vaillancourt B, Hamilton JP, Manrique-Carpintero NC, Gustafson TJ, Barry K, Lipzen A, Tracy WF, Mikel MA, Kaeppler SM, Buell CR, de Leon N. Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel. The Plant Genome. 12. PMID 31290926 DOI: 10.3835/Plantgenome2018.09.0069 |
0.473 |
|
| 2019 |
Nadakuduti SS, Starker CG, Ko DK, Jayakody TB, Buell CR, Voytas DF, Douches DS. Evaluation of Methods to Assess Activity of Engineered Genome-Editing Nucleases in Protoplasts. Frontiers in Plant Science. 10: 110. PMID 30800139 DOI: 10.3389/Fpls.2019.00110 |
0.389 |
|
| 2019 |
Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, ... ... Buell CR, et al. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. Gigascience. PMID 30715294 DOI: 10.1093/Gigascience/Giz012 |
0.42 |
|
| 2019 |
Zhao D, Hamilton JP, Bhat WW, Johnson SR, Godden GT, Kinser TJ, Boachon B, Dudareva N, Soltis DE, Soltis PS, Hamberger B, Buell CR. A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways. Gigascience. PMID 30698701 DOI: 10.1093/Gigascience/Giz005 |
0.419 |
|
| 2019 |
Nadakuduti SS, Starker CG, Voytas DF, Buell CR, Douches DS. Genome Editing in Potato with CRISPR/Cas9. Methods in Molecular Biology (Clifton, N.J.). 1917: 183-201. PMID 30610637 DOI: 10.1007/978-1-4939-8991-1_14 |
0.385 |
|
| 2019 |
Hoopes GM, Hamilton JP, Wood JC, Esteban E, Pasha A, Vaillancourt B, Provart NJ, Buell CR. An updated gene atlas for maize reveals organ-specific and stress-induced genes. The Plant Journal : For Cell and Molecular Biology. 97: 1154-1167. PMID 30537259 DOI: 10.1111/tpj.14184 |
0.46 |
|
| 2018 |
Lau KH, Del Rosario Herrera M, Crisovan E, Wu S, Fei Z, Khan MA, Buell CR, Gemenet DC. Transcriptomic analysis of sweet potato under dehydration stress identifies candidate genes for drought tolerance. Plant Direct. 2: e00092. PMID 31245692 DOI: 10.1002/pld3.92 |
0.353 |
|
| 2018 |
Ramstein GP, Evans J, Nandety A, Saha MC, Brummer EC, Kaeppler SM, Buell CR, Casler MD. Candidate Variants for Additive and Interactive Effects on Bioenergy Traits in Switchgrass ( L.) Identified by Genome-Wide Association Analyses. The Plant Genome. 11. PMID 30512032 DOI: 10.3835/Plantgenome2018.01.0002 |
0.717 |
|
| 2018 |
Nadakuduti SS, Buell CR, Voytas DF, Starker CG, Douches DS. Genome Editing for Crop Improvement - Applications in Clonally Propagated Polyploids With a Focus on Potato ( L.). Frontiers in Plant Science. 9: 1607. PMID 30483283 DOI: 10.3389/Fpls.2018.01607 |
0.415 |
|
| 2018 |
Ko DK, Nadakuduti SS, Douches DS, Buell CR. Transcriptome profiling of transgenic potato plants provides insights into variability caused by plant transformation. Plos One. 13: e0206055. PMID 30408049 DOI: 10.1371/Journal.Pone.0206055 |
0.317 |
|
| 2018 |
Wu S, Lau KH, Cao Q, Hamilton JP, Sun H, Zhou C, Eserman L, Gemenet DC, Olukolu BA, Wang H, Crisovan E, Godden GT, Jiao C, Wang X, Kitavi M, ... ... Buell CR, et al. Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Nature Communications. 9: 4580. PMID 30389915 DOI: 10.1038/s41467-018-06983-8 |
0.463 |
|
| 2018 |
Franke J, Kim J, Hamilton JP, Zhao D, Pham GM, Wiegert-Rininger K, Crisovan E, Newton L, Vaillancourt B, Tatsis E, Buell CR, O'Connor SE. Gene discovery in Gelsemium highlights conserved gene clusters in monoterpene indole alkaloid biosynthesis. Chembiochem : a European Journal of Chemical Biology. PMID 30300974 DOI: 10.1002/Cbic.201800592 |
0.452 |
|
| 2018 |
Taylor M, Tornqvist CE, Zhao X, Grabowski P, Doerge R, Ma J, Volenec J, Evans J, Ramstein GP, Sanciangco MD, Buell CR, Casler MD, Jiang Y. Genome-Wide Association Study in Pseudo-F Populations of Switchgrass Identifies Genetic Loci Affecting Heading and Anthesis Dates. Frontiers in Plant Science. 9: 1250. PMID 30271414 DOI: 10.3389/Fpls.2018.01250 |
0.74 |
|
| 2018 |
Tornqvist CE, Taylor M, Jiang Y, Evans J, Buell CR, Kaeppler SM, Casler MD. Quantitative Trait Locus Mapping for Flowering Time in a Lowland × Upland Switchgrass Pseudo-F2 Population. The Plant Genome. 11. PMID 30025023 DOI: 10.3835/Plantgenome2017.10.0093 |
0.705 |
|
| 2018 |
Manrique-Carpintero NC, Coombs JJ, Pham GM, Laimbeer FPE, Braz GT, Jiang J, Veilleux RE, Buell CR, Douches DS. Genome Reduction in Tetraploid Potato Reveals Genetic Load, Haplotype Variation, and Loci Associated With Agronomic Traits. Frontiers in Plant Science. 9: 944. PMID 30018631 DOI: 10.3389/Fpls.2018.00944 |
0.356 |
|
| 2018 |
Boachon B, Buell CR, Crisovan E, Dudareva N, Garcia N, Godden G, Henry L, Kamileen MO, Kates HR, Kilgore MB, Lichman BR, Mavrodiev EV, Newton L, Rodriguez-Lopez C, O'Connor SE, et al. Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae. Molecular Plant. PMID 29920355 DOI: 10.1016/J.Molp.2018.06.002 |
0.33 |
|
| 2018 |
Evans J, Sanciangco MD, Lau KH, Crisovan E, Barry K, Daum C, Hundley H, Jenkins J, Kennedy M, Kunde-Ramamoorthy G, Vaillancourt B, Acharya A, Schmutz J, Saha M, Kaeppler SM, ... ... Buell CR, et al. Extensive Genetic Diversity is Present within North American Switchgrass Germplasm. The Plant Genome. 11. PMID 29505643 DOI: 10.3835/Plantgenome2017.06.0055 |
0.719 |
|
| 2018 |
Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N. The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. Nucleic Acids Research. PMID 29415183 DOI: 10.1093/Nar/Gky091 |
0.389 |
|
| 2018 |
Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR. Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity. The Plant Journal : For Cell and Molecular Biology. PMID 29405524 DOI: 10.1111/tpj.13857 |
0.472 |
|
| 2018 |
Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N. The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. Nucleic Acids Research. PMID 29365184 DOI: 10.1093/nar/gky025 |
0.389 |
|
| 2017 |
Hoopes GM, Hamilton JP, Kim J, Zhao D, Wiegert-Rininger K, Crisovan E, Buell CR. Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anti-Cancer and Anti-Malarial Cardenolides. G3 (Bethesda, Md.). PMID 29237703 DOI: 10.1534/G3.117.300331 |
0.427 |
|
| 2017 |
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490 |
0.606 |
|
| 2017 |
Hardigan MA, Laimbeer FPE, Newton L, Crisovan E, Hamilton JP, Vaillancourt B, Wiegert-Rininger K, Wood JC, Douches DS, Farré EM, Veilleux RE, Buell CR. Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087343 DOI: 10.1073/Pnas.1714380114 |
0.434 |
|
| 2017 |
Marand AP, Jansky SH, Zhao H, Leisner CP, Zhu X, Zeng Z, Crisovan E, Newton L, Hamernik AJ, Veilleux RE, Buell CR, Jiang J. Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato. Genome Biology. 18: 203. PMID 29084572 DOI: 10.1186/S13059-017-1326-8 |
0.348 |
|
| 2017 |
Diepenbrock CH, Kandianis CB, Lipka AE, Magallanes-Lundback M, Vaillancourt B, Góngora-Castillo E, Wallace JG, Cepela J, Mesberg A, Bradbury P, Ilut DC, Mateos-Hernandez M, Hamilton J, Owens BF, Tiede T, ... ... Buell CR, et al. Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain. The Plant Cell. PMID 28970338 DOI: 10.1105/Tpc.17.00475 |
0.634 |
|
| 2017 |
Zhao D, Hamilton JP, Pham GM, Crisovan E, Wiegert-Rininger K, Vaillancourt B, DellaPenna D, Buell CR. De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin. Gigascience. 6: 1-7. PMID 28922823 DOI: 10.1093/gigascience/gix065 |
0.72 |
|
| 2017 |
Pham GM, Newton L, Wiegert-Rininger K, Vaillancourt B, Douches DS, Buell CR. Extensive genome heterogeneity leads to preferential allele expression and copy number-dependent expression in cultivated potato. The Plant Journal : For Cell and Molecular Biology. PMID 28869794 DOI: 10.1111/tpj.13706 |
0.454 |
|
| 2017 |
Buell CR, Voytas DF. Technology Turbocharges Functional Genomics. The Plant Cell. PMID 28584164 DOI: 10.1105/Tpc.17.00443 |
0.418 |
|
| 2017 |
Tornqvist C, Vaillancourt B, Kim J, Buell CR, Kaeppler SM, Casler MD. Transcriptional Analysis of Flowering Time in Switchgrass Bioenergy Research. 10: 700-713. DOI: 10.1007/S12155-017-9832-9 |
0.388 |
|
| 2016 |
Peterson BA, Holt SH, Laimbeer FP, Doulis AG, Coombs J, Douches DS, Hardigan MA, Buell CR, Veilleux RE. Self-Fertility in a Cultivated Diploid Potato Population Examined with the Infinium 8303 Potato Single-Nucleotide Polymorphism Array. The Plant Genome. 9. PMID 27902797 DOI: 10.3835/Plantgenome2016.01.0003 |
0.349 |
|
| 2016 |
Hirsch C, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler ES, ... Buell CR, et al. Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. The Plant Cell. PMID 27803309 DOI: 10.1105/Tpc.16.00353 |
0.411 |
|
| 2016 |
Grabowski PP, Evans J, Daum C, Deshpande S, Barry KW, Kennedy M, Ramstein G, Kaeppler SM, Buell CR, Jiang Y, Casler MD. Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data. The New Phytologist. PMID 27443672 DOI: 10.1111/Nph.14101 |
0.767 |
|
| 2016 |
Ramstein GP, Evans J, Kappler SM, Mitchell RB, Vogel KP, Buell CR, Casler MD. Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium. G3 (Bethesda, Md.). PMID 26869619 DOI: 10.1534/G3.115.024950 |
0.726 |
|
| 2016 |
Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA. Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing. Plos One. 11: e0147229. PMID 26789840 DOI: 10.1371/Journal.Pone.0147229 |
0.336 |
|
| 2016 |
Hirsch CD, Buell CR, Hirsch CN. A Toolbox of Potato Genetic and Genomic Resources American Journal of Potato Research. 93: 21-32. DOI: 10.1007/s12230-015-9486-0 |
0.428 |
|
| 2015 |
Evans J, Crisovan E, Barry K, Daum C, Jenkins J, Kunde-Ramamoorthy G, Nandety A, Ngan CY, Vaillancourt B, Wei CL, Schmutz J, Kaeppler SM, Casler MD, Buell CR. Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing. The Plant Journal : For Cell and Molecular Biology. PMID 26426343 DOI: 10.1111/Tpj.13041 |
0.778 |
|
| 2015 |
Kim J, Buell CR. A revolution in plant metabolism: Genome-enabled pathway discovery. Plant Physiology. PMID 26224805 DOI: 10.1104/Pp.15.00976 |
0.357 |
|
| 2015 |
Haase NJ, Beissinger T, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, de Leon N. Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis. G3 (Bethesda, Md.). PMID 26038364 DOI: 10.1534/G3.115.017665 |
0.373 |
|
| 2015 |
Kellner F, Kim J, Clavijo BJ, Hamilton JP, Childs KL, Vaillancourt B, Cepela J, Habermann M, Steuernagel B, Clissold L, McLay K, Buell CR, O'Connor SE. Genome-guided investigation of plant natural product biosynthesis. The Plant Journal : For Cell and Molecular Biology. 82: 680-92. PMID 25759247 DOI: 10.1111/Tpj.12827 |
0.568 |
|
| 2015 |
Hardigan MA, Bamberg J, Buell CR, Douches DS. Taxonomy and genetic differentiation among wild and cultivated germplasm of solanum sect. Petota Plant Genome. 8. DOI: 10.3835/Plantgenome2014.06.0025 |
0.392 |
|
| 2014 |
Salvo SA, Hirsch CN, Buell CR, Kaeppler SM, Kaeppler HF. Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes. Plos One. 9: e111407. PMID 25356773 DOI: 10.1371/Journal.Pone.0111407 |
0.393 |
|
| 2014 |
Owens BF, Lipka AE, Magallanes-Lundback M, Tiede T, Diepenbrock CH, Kandianis CB, Kim E, Cepela J, Mateos-Hernandez M, Buell CR, Buckler ES, DellaPenna D, Gore MA, Rocheford T. A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels. Genetics. 198: 1699-716. PMID 25258377 DOI: 10.1534/Genetics.114.169979 |
0.711 |
|
| 2014 |
Burton AL, Johnson JM, Foerster JM, Hirsch CN, Buell CR, Hanlon MT, Kaeppler SM, Brown KM, Lynch JP. QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 127: 2293-311. PMID 25230896 DOI: 10.1007/S00122-014-2353-4 |
0.377 |
|
| 2014 |
Bedewitz MA, Góngora-Castillo E, Uebler JB, Gonzales-Vigil E, Wiegert-Rininger KE, Childs KL, Hamilton JP, Vaillancourt B, Yeo YS, Chappell J, DellaPenna D, Jones AD, Buell CR, Barry CS. A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna. The Plant Cell. 26: 3745-62. PMID 25228340 DOI: 10.1105/Tpc.114.130534 |
0.55 |
|
| 2014 |
Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 198: 409-21. PMID 25037958 DOI: 10.1534/Genetics.114.167155 |
0.368 |
|
| 2014 |
Hamilton JP, Buell CR. Timber! Felling the loblolly pine genome. Genome Biology. 15: 111. PMID 25000971 DOI: 10.1186/Gb4170 |
0.463 |
|
| 2014 |
Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR. Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum. The Plant Journal : For Cell and Molecular Biology. 79: 993-1008. PMID 24947485 DOI: 10.1111/Tpj.12601 |
0.803 |
|
| 2014 |
Zhang H, Koblížková A, Wang K, Gong Z, Oliveira L, Torres GA, Wu Y, Zhang W, Novák P, Buell CR, Macas J, Jiang J. Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres. The Plant Cell. 26: 1436-1447. PMID 24728646 DOI: 10.1105/tpc.114.123877 |
0.323 |
|
| 2014 |
Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Peñagaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR. Insights into the maize pan-genome and pan-transcriptome. The Plant Cell. 26: 121-35. PMID 24488960 DOI: 10.1105/Tpc.113.119982 |
0.482 |
|
| 2014 |
Hirsch CD, Evans J, Buell CR, Hirsch CN. Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes. Briefings in Functional Genomics. 13: 257-67. PMID 24395692 DOI: 10.1093/Bfgp/Elt051 |
0.763 |
|
| 2014 |
Beissinger TM, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, Gianola D, de Leon N. A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number. Genetics. 196: 829-40. PMID 24381334 DOI: 10.1534/Genetics.113.160655 |
0.365 |
|
| 2014 |
Childs KL, Nandety A, Hirsch CN, Góngora-Castillo E, Schmutz J, Kaeppler SM, Casler MD, Buell CR. Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass The Plant Genome. 7: plantgenome2013.12.0. DOI: 10.3835/Plantgenome2013.12.0041 |
0.404 |
|
| 2014 |
Douches D, Hirsch CN, Manrique-Carpintero NC, Massa AN, Coombs J, Hardigan M, Bisognin D, De Jong W, Buell CR. The Contribution of the Solanaceae Coordinated Agricultural Project to Potato Breeding Potato Research. 57: 215-224. DOI: 10.1007/S11540-014-9267-Z |
0.368 |
|
| 2013 |
Gonzalez-Jorge S, Ha SH, Magallanes-Lundback M, Gilliland LU, Zhou A, Lipka AE, Nguyen YN, Angelovici R, Lin H, Cepela J, Little H, Buell CR, Gore MA, Dellapenna D. Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds. The Plant Cell. 25: 4812-26. PMID 24368792 DOI: 10.1105/Tpc.113.119677 |
0.694 |
|
| 2013 |
Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, Schwartz DC, Tanaka T, Wu J, Zhou S, Childs KL, Davidson RM, Lin H, Quesada-Ocampo L, Vaillancourt B, ... ... Buell CR, et al. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice (New York, N.Y.). 6: 4. PMID 24280374 DOI: 10.1186/1939-8433-6-4 |
0.673 |
|
| 2013 |
Adhikari BN, Hamilton JP, Zerillo MM, Tisserat N, Lévesque CA, Buell CR. Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes. Plos One. 8: e75072. PMID 24124466 DOI: 10.1371/journal.pone.0075072 |
0.404 |
|
| 2013 |
Zerillo MM, Adhikari BN, Hamilton JP, Buell CR, Lévesque CA, Tisserat N. Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation. Plos One. 8: e72572. PMID 24069150 DOI: 10.1371/journal.pone.0072572 |
0.395 |
|
| 2013 |
Lipka AE, Gore MA, Magallanes-Lundback M, Mesberg A, Lin H, Tiede T, Chen C, Buell CR, Buckler ES, Rocheford T, DellaPenna D. Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. G3 (Bethesda, Md.). 3: 1287-99. PMID 23733887 DOI: 10.1534/G3.113.006148 |
0.759 |
|
| 2013 |
Hirsch CN, Hirsch CD, Felcher K, Coombs J, Zarka D, Van Deynze A, De Jong W, Veilleux RE, Jansky S, Bethke P, Douches DS, Buell CR. Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries. G3 (Bethesda, Md.). 3: 1003-13. PMID 23589519 DOI: 10.1534/G3.113.005595 |
0.333 |
|
| 2013 |
Iovene M, Zhang T, Lou Q, Buell CR, Jiang J. Copy number variation in potato - an asexually propagated autotetraploid species. The Plant Journal : For Cell and Molecular Biology. 75: 80-9. PMID 23573982 DOI: 10.1111/tpj.12200 |
0.416 |
|
| 2013 |
Hirsch CN, Buell CR. Tapping the promise of genomics in species with complex, nonmodel genomes. Annual Review of Plant Biology. 64: 89-110. PMID 23451780 DOI: 10.1146/annurev-arplant-050312-120237 |
0.372 |
|
| 2013 |
Beissinger TM, Hirsch CN, Sekhon RS, Foerster JM, Johnson JM, Muttoni G, Vaillancourt B, Buell CR, Kaeppler SM, de Leon N. Marker density and read depth for genotyping populations using genotyping-by-sequencing. Genetics. 193: 1073-81. PMID 23410831 DOI: 10.1534/Genetics.112.147710 |
0.328 |
|
| 2013 |
Góngora-Castillo E, Buell CR. Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence. Natural Product Reports. 30: 490-500. PMID 23377493 DOI: 10.1039/c3np20099j |
0.484 |
|
| 2013 |
Yeo YS, Nybo SE, Chittiboyina AG, Weerasooriya AD, Wang YH, Góngora-Castillo E, Vaillancourt B, Buell CR, DellaPenna D, Celiz MD, Jones AD, Wurtele ES, Ransom N, Dudareva N, Shaaban KA, et al. Functional identification of valerena-1,10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis. The Journal of Biological Chemistry. 288: 3163-73. PMID 23243312 DOI: 10.1074/Jbc.M112.415836 |
0.582 |
|
| 2012 |
Góngora-Castillo E, Childs KL, Fedewa G, Hamilton JP, Liscombe DK, Magallanes-Lundback M, Mandadi KK, Nims E, Runguphan W, Vaillancourt B, Varbanova-Herde M, Dellapenna D, McKnight TD, O'Connor S, Buell CR. Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species. Plos One. 7: e52506. PMID 23300689 DOI: 10.1371/Journal.Pone.0052506 |
0.664 |
|
| 2012 |
Góngora-Castillo E, Fedewa G, Yeo Y, Chappell J, DellaPenna D, Buell CR. Genomic approaches for interrogating the biochemistry of medicinal plant species. Methods in Enzymology. 517: 139-59. PMID 23084937 DOI: 10.1016/B978-0-12-404634-4.00007-3 |
0.68 |
|
| 2012 |
Gong Z, Wu Y, Koblízková A, Torres GA, Wang K, Iovene M, Neumann P, Zhang W, Novák P, Buell CR, Macas J, Jiang J. Repeatless and repeat-based centromeres in potato: implications for centromere evolution. The Plant Cell. 24: 3559-74. PMID 22968715 DOI: 10.1105/tpc.112.100511 |
0.36 |
|
| 2012 |
Sim SC, Durstewitz G, Plieske J, Wieseke R, Ganal MW, Van Deynze A, Hamilton JP, Buell CR, Causse M, Wijeratne S, Francis DM. Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. Plos One. 7: e40563. PMID 22802968 DOI: 10.1371/journal.pone.0040563 |
0.305 |
|
| 2012 |
Felcher KJ, Coombs JJ, Massa AN, Hansey CN, Hamilton JP, Veilleux RE, Buell CR, Douches DS. Integration of two diploid potato linkage maps with the potato genome sequence Plos One. 7. PMID 22558443 DOI: 10.1371/Journal.Pone.0036347 |
0.359 |
|
| 2012 |
Hansey CN, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Buell CR. Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing. Plos One. 7: e33071. PMID 22438891 DOI: 10.1371/Journal.Pone.0033071 |
0.403 |
|
| 2012 |
Childs KL, Konganti K, Buell CR. The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species. Database : the Journal of Biological Databases and Curation. 2012: bar061. PMID 22250003 DOI: 10.1093/Database/Bar061 |
0.459 |
|
| 2012 |
Shen QJ, Yu D, Jeon JS, Piffanelli P, Abbruscato P, Guo ZJ, Zhang Y, Itoh T, Lee SS, Buell CR, Nagato Y, McCouch S, Yano M, Wang Gl, Jena KK, et al. Nomenclature report on rice WRKY's - conflict regarding gene names and its solution Rice. 5: 1-3. DOI: 10.1186/1939-8433-5-3 |
0.353 |
|
| 2011 |
Torres GA, Gong Z, Iovene M, Hirsch CD, Buell CR, Bryan GJ, Novák P, Macas J, Jiang J. Organization and evolution of subtelomeric satellite repeats in the potato genome. G3 (Bethesda, Md.). 1: 85-92. PMID 22384321 DOI: 10.1534/g3.111.000125 |
0.3 |
|
| 2011 |
Hamilton JP, Neeno-Eckwall EC, Adhikari BN, Perna NT, Tisserat N, Leach JE, Lévesque CA, Buell CR. The Comprehensive Phytopathogen Genomics Resource: A web-based resource for data-mining plant pathogen genomes Database. 2011. PMID 22120664 DOI: 10.1093/Database/Bar053 |
0.462 |
|
| 2011 |
Massa AN, Childs KL, Lin H, Bryan GJ, Giuliano G, Buell CR. The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44. Plos One. 6: e26801. PMID 22046362 DOI: 10.1371/Journal.Pone.0026801 |
0.666 |
|
| 2011 |
Childs KL, Davidson RM, Buell CR. Gene coexpression network analysis as a source of functional annotation for rice genes. Plos One. 6: e22196. PMID 21799793 DOI: 10.1371/Journal.Pone.0022196 |
0.301 |
|
| 2011 |
Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, ... ... Buell CR, et al. Genome sequence and analysis of the tuber crop potato. Nature. 475: 189-95. PMID 21743474 DOI: 10.1038/Nature10158 |
0.782 |
|
| 2011 |
Hamilton JP, Hansey CN, Whitty BR, Stoffel K, Massa AN, Van Deynze A, De Jong WS, Douches DS, Buell CR. Single nucleotide polymorphism discovery in elite north American potato germplasm Bmc Genomics. 12. PMID 21658273 DOI: 10.1186/1471-2164-12-302 |
0.334 |
|
| 2011 |
Triplett LR, Hamilton JP, Buell CR, Tisserat NA, Verdier V, Zink F, Leach JE. Genomic analysis of Xanthomonas oryzae isolates from rice grown in the United States reveals substantial divergence from known X. oryzae pathovars. Applied and Environmental Microbiology. 77: 3930-7. PMID 21515727 DOI: 10.1128/Aem.00028-11 |
0.402 |
|
| 2011 |
Giddings LA, Liscombe DK, Hamilton JP, Childs KL, DellaPenna D, Buell CR, O'Connor SE. A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus Journal of Biological Chemistry. 286: 16751-16757. PMID 21454651 DOI: 10.1074/Jbc.M111.225383 |
0.615 |
|
| 2011 |
Sekhon RS, Lin H, Childs KL, Hansey CN, Buell CR, de Leon N, Kaeppler SM. Genome-wide atlas of transcription during maize development. The Plant Journal : For Cell and Molecular Biology. 66: 553-63. PMID 21299659 DOI: 10.1111/J.1365-313X.2011.04527.X |
0.651 |
|
| 2011 |
Casler MD, Tobias CM, Kaeppler SM, Buell CR, Wang Z, Cao P, Schmutz J, Ronald P. The Switchgrass Genome: Tools and Strategies The Plant Genome. 4: 273-282. DOI: 10.3835/Plantgenome2011.10.0026 |
0.482 |
|
| 2011 |
Davidson RM, Hansey CN, Gowda M, Childs KL, Lin H, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Jiang N, Buell CR. Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes The Plant Genome. 4: 191-203. DOI: 10.3835/Plantgenome2011.05.0015 |
0.663 |
|
| 2010 |
Buell CR, Last RL. Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture. Plant Physiology. 154: 497-500. PMID 20921172 DOI: 10.1104/pp.110.159541 |
0.325 |
|
| 2010 |
Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, ... ... Buell CR, et al. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biology. 11: R73. PMID 20626842 DOI: 10.1186/Gb-2010-11-7-R73 |
0.706 |
|
| 2010 |
Lin H, Moghe G, Ouyang S, Iezzoni A, Shiu SH, Gu X, Buell CR. Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. Bmc Evolutionary Biology. 10: 41. PMID 20152032 DOI: 10.1186/1471-2148-10-41 |
0.697 |
|
| 2010 |
Lang JM, Hamilton JP, Diaz MGQ, Van Sluys MA, Burgos MRG, Vera Cruz CM, Buell CR, Tisserat NA, Leach JE. Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola Plant Disease. 94: 311-319. DOI: 10.1094/PDIS-94-3-0311 |
0.305 |
|
| 2009 |
Zou C, Lehti-Shiu MD, Thibaud-Nissen F, Prakash T, Buell CR, Shiu SH. Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiology. 151: 3-15. PMID 19641029 DOI: 10.1104/pp.109.140632 |
0.472 |
|
| 2009 |
Thibaud-Nissen F, Ouyang S, Buell CR. Identification and characterization of pseudogenes in the rice gene complement. Bmc Genomics. 10: 317. PMID 19607679 DOI: 10.1186/1471-2164-10-317 |
0.363 |
|
| 2009 |
McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, Ulat VJ, Zeller G, Clark RM, Hoen DR, Bureau TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasram B, ... ... Buell CR, et al. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America. 106: 12273-8. PMID 19597147 DOI: 10.1073/Pnas.0900992106 |
0.452 |
|
| 2009 |
Ouyang S, Thibaud-Nissen F, Childs KL, Zhu W, Buell CR. Plant genome annotation methods. Methods in Molecular Biology (Clifton, N.J.). 513: 263-82. PMID 19347655 DOI: 10.1007/978-1-59745-427-8_14 |
0.495 |
|
| 2009 |
Kuang H, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Ouyang S, Jiang J, Buell CR, Baker B. Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Research. 19: 42-56. PMID 19037014 DOI: 10.1101/gr.078196.108 |
0.344 |
|
| 2009 |
Buell CR. Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics. Plant Physiology. 149: 111-6. PMID 19005087 DOI: 10.1104/pp.108.128926 |
0.411 |
|
| 2009 |
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Lee Y, Malek R, Wang A, Yuan Q, Haas B, Wortman J, Buell CR. Annotation of the rice genome International Rice Research Notes. 31. DOI: 10.3860/Irrn.V31I2.1141 |
0.666 |
|
| 2008 |
Cheung F, Win J, Lang JM, Hamilton J, Vuong H, Leach JE, Kamoun S, André Lévesque C, Tisserat N, Buell CR. Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches. Bmc Genomics. 9: 542. PMID 19014603 DOI: 10.1186/1471-2164-9-542 |
0.43 |
|
| 2008 |
Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, Frank BC, Ly E, Zheng L, Jia Y, Hsia AP, ... ... Buell CR, et al. Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. Plos One. 3: e3337. PMID 18836531 DOI: 10.1371/Journal.Pone.0003337 |
0.405 |
|
| 2008 |
Zhu W, Ouyang S, Iovene M, O'Brien K, Vuong H, Jiang J, Buell CR. Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition. Bmc Genomics. 9: 286. PMID 18554403 DOI: 10.1186/1471-2164-9-286 |
0.496 |
|
| 2008 |
Lin H, Ouyang S, Egan A, Nobuta K, Haas BJ, Zhu W, Gu X, Silva JC, Meyers BC, Buell CR. Characterization of paralogous protein families in rice. Bmc Plant Biology. 8: 18. PMID 18284697 DOI: 10.1186/1471-2229-8-18 |
0.671 |
|
| 2008 |
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biology. 9: R7. PMID 18190707 DOI: 10.1186/Gb-2008-9-1-R7 |
0.351 |
|
| 2008 |
Thibaud-Nissen F, Wortman J, Buell CR, Zhu W. Structural, Functional, and Comparative Annotation of Plant Genomes The Handbook of Plant Functional Genomics: Concepts and Protocols. 373-395. DOI: 10.1002/9783527622542.ch18 |
0.495 |
|
| 2007 |
Chan AP, Rabinowicz PD, Quackenbush J, Buell CR, Town CD. Plant database resources at The Institute for Genomic Research. Methods in Molecular Biology (Clifton, N.J.). 406: 113-36. PMID 18287690 DOI: 10.1007/978-1-59745-535-0_5 |
0.487 |
|
| 2007 |
Van Deynze A, Stoffel K, Buell CR, Kozik A, Liu J, van der Knaap E, Francis D. Diversity in conserved genes in tomato. Bmc Genomics. 8: 465. PMID 18088428 DOI: 10.1186/1471-2164-8-465 |
0.431 |
|
| 2007 |
Thibaud-Nissen F, Campbell M, Hamilton JP, Zhu W, Buell CR. EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome. Bmc Genomics. 8: 388. PMID 17961238 DOI: 10.1186/1471-2164-8-388 |
0.531 |
|
| 2007 |
Campbell MA, Zhu W, Jiang N, Lin H, Ouyang S, Childs KL, Haas BJ, Hamilton JP, Buell CR. Identification and characterization of lineage-specific genes within the poaceae Plant Physiology. 145: 1311-1322. PMID 17951464 DOI: 10.1104/Pp.107.104513 |
0.689 |
|
| 2007 |
Stupar RM, Bhaskar PB, Yandell BS, Rensink WA, Hart AL, Ouyang S, Veilleux RE, Busse JS, Erhardt RJ, Buell CR, Jiang J. Phenotypic and transcriptomic changes associated with potato autopolyploidization. Genetics. 176: 2055-67. PMID 17565939 DOI: 10.1534/Genetics.107.074286 |
0.407 |
|
| 2007 |
Zhu W, Buell CR. Improvement of whole-genome annotation of cereals through comparative analyses. Genome Research. 17: 299-310. PMID 17284677 DOI: 10.1101/gr.5881807 |
0.525 |
|
| 2007 |
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR. The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Research. 35: D883-7. PMID 17145706 DOI: 10.1093/Nar/Gkl976 |
0.696 |
|
| 2007 |
Childs KL, Hamilton JP, Zhu W, Ly E, Cheung F, Wu H, Rabinowicz PD, Town CD, Buell CR, Chan AP. The TIGR Plant Transcript Assemblies database. Nucleic Acids Research. 35: D846-51. PMID 17088284 DOI: 10.1093/Nar/Gkl785 |
0.327 |
|
| 2007 |
Antonio BA, Buell CR, Yamazaki Y, Yap I, Perin C, Bruskiewich R. Informatics resources for rice functional genomics Rice Functional Genomics: Challenges, Progress and Prospects. 355-394. DOI: 10.1007/0-387-48914-2_14 |
0.479 |
|
| 2006 |
Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. Bmc Genomics. 7: 327. PMID 17194304 DOI: 10.1186/1471-2164-7-327 |
0.355 |
|
| 2006 |
Vencato M, Tian F, Alfano JR, Buell CR, Cartinhour S, DeClerck GA, Guttman DS, Stavrinides J, Joardar V, Lindeberg M, Bronstein PA, Mansfield JW, Myers CR, Collmer A, Schneider DJ. Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A. Molecular Plant-Microbe Interactions : Mpmi. 19: 1193-206. PMID 17073302 DOI: 10.1094/Mpmi-19-1193 |
0.334 |
|
| 2006 |
Cairney J, Zheng L, Cowels A, Hsiao J, Zismann V, Liu J, Ouyang S, Thibaud-Nissen F, Hamilton J, Childs K, Pullman GS, Zhang Y, Oh T, Buell CR. Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis. Plant Molecular Biology. 62: 485-501. PMID 17001497 DOI: 10.1007/S11103-006-9035-9 |
0.385 |
|
| 2006 |
Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/Tpc.106.043794 |
0.396 |
|
| 2006 |
Lin H, Zhu W, Silva JC, Gu X, Buell CR. Intron gain and loss in segmentally duplicated genes in rice. Genome Biology. 7: R41. PMID 16719932 DOI: 10.1186/Gb-2006-7-5-R41 |
0.675 |
|
| 2006 |
McNally KL, Bruskiewich R, Mackill D, Buell CR, Leach JE, Leung H. Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Plant Physiology. 141: 26-31. PMID 16684934 DOI: 10.1104/Pp.106.077313 |
0.409 |
|
| 2006 |
Avila-Adame C, Gómez-Alpizar L, Zismann V, Jones KM, Buell CR, Ristaino JB. Mitochondrial genome sequences and molecular evolution of the Irish potato famine pathogen, Phytophthora infestans. Current Genetics. 49: 39-46. PMID 16328503 DOI: 10.1007/S00294-005-0016-3 |
0.316 |
|
| 2005 |
Rensink WA, Buell CR. Microarray expression profiling resources for plant genomics. Trends in Plant Science. 10: 603-9. PMID 16275051 DOI: 10.1016/j.tplants.2005.10.003 |
0.482 |
|
| 2005 |
Kresovich S, Barbazuk B, Bedell JA, Borrell A, Buell CR, Burke J, Clifton S, Cordonnier-Pratt MM, Cox S, Dahlberg J, Erpelding J, Fulton TM, Fulton B, Fulton L, Gingle AR, et al. Toward sequencing the sorghum genome. A U.S. National Science Foundation-sponsored workshop report Plant Physiology. 138: 1898-1902. PMID 16172096 DOI: 10.1104/Pp.105.065136 |
0.42 |
|
| 2005 |
Rensink WA, Lee Y, Liu J, Iobst S, Ouyang S, Buell CR. Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts. Bmc Genomics. 6: 124. PMID 16162286 DOI: 10.1186/1471-2164-6-124 |
0.407 |
|
| 2005 |
Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, Brinkac LM, Daugherty SC, Deboy R, Durkin AS, Giglio MG, Madupu R, Nelson WC, Rosovitz MJ, Sullivan S, Crabtree J, ... ... Buell CR, et al. Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. Journal of Bacteriology. 187: 6488-98. PMID 16159782 DOI: 10.1128/Jb.187.18.6488-6498.2005 |
0.428 |
|
| 2005 |
Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Research. 15: 1284-91. PMID 16109971 DOI: 10.1101/Gr.3869505 |
0.391 |
|
| 2005 |
Rensink W, Hart A, Liu J, Ouyang S, Zismann V, Buell CR. Analyzing the potato abiotic stress transcriptome using expressed sequence tags. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 48: 598-605. PMID 16094426 DOI: 10.1139/g05-034 |
0.325 |
|
| 2005 |
Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR. The institute for genomic research Osa1 rice genome annotation database. Plant Physiology. 138: 18-26. PMID 15888674 DOI: 10.1104/Pp.104.059063 |
0.716 |
|
| 2005 |
Choisne N, Demange N, Orjeda G, Samain S, D'Hont A, Cattolico L, Pelletier E, Couloux A, Segurens B, Wincker P, Scarpelli C, Weissenbach J, Salanoubat M, Singh NK, Mohapatra T, ... ... Buell CR, et al. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications Bmc Biology. 3. DOI: 10.1186/1741-7007-3-20 |
0.668 |
|
| 2004 |
Gill BS, Appels R, Botha-Oberholster AM, Buell CR, Bennetzen JL, Chalhoub B, Chumley F, Dvorák J, Iwanaga M, Keller B, Li W, McCombie WR, Ogihara Y, Quetier F, Sasaki T. A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics. 168: 1087-96. PMID 15514080 DOI: 10.1534/Genetics.104.034769 |
0.41 |
|
| 2004 |
Rensink WA, Buell CR. Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species. Plant Physiology. 135: 622-9. PMID 15208410 DOI: 10.1104/pp.104.040170 |
0.489 |
|
| 2004 |
Ouyang S, Buell CR. The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Research. 32: D360-3. PMID 14681434 DOI: 10.1093/nar/gkh099 |
0.369 |
|
| 2003 |
Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, et al. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of America. 100: 10181-6. PMID 12928499 DOI: 10.1073/Pnas.1731982100 |
0.438 |
|
| 2003 |
Buell CR, Sundaresan V. A workshop on establishing a rice resource center in the United States. Plant Physiology. 132: 1137. PMID 12857795 DOI: 10.1104/Pp.024984 |
0.4 |
|
| 2003 |
Nagaki K, Song J, Stupar RM, Parokonny AS, Yuan Q, Ouyang S, Liu J, Hsiao J, Jones KM, Dawe RK, Buell CR, Jiang J. Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres. Genetics. 163: 759-70. PMID 12618412 |
0.314 |
|
| 2003 |
Ronning CM, Stegalkina SS, Ascenzi RA, Bougri O, Hart AL, Utterbach TR, Vanaken SE, Riedmuller SB, White JA, Cho J, Pertea GM, Lee Y, Karamycheva S, Sultana R, Tsai J, ... ... Buell CR, et al. Comparative analyses of potato expressed sequence tag libraries. Plant Physiology. 131: 419-29. PMID 12586867 DOI: 10.1104/Pp.013581 |
0.339 |
|
| 2003 |
Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR. The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Research. 31: 229-33. PMID 12519988 DOI: 10.1093/Nar/Gkg059 |
0.494 |
|
| 2002 |
Buell CR. Current status of the sequence of the rice genome and prospects for finishing the first monocot genome Plant Physiology. 130: 1585-1586. PMID 12481040 DOI: 10.1104/pp.014878 |
0.404 |
|
| 2002 |
Buell CR. Obtaining the sequence of the rice genome and lessons learned along the way Trends in Plant Science. 7: 538-542. PMID 12475494 DOI: 10.1016/S1360-1385(02)02369-5 |
0.421 |
|
| 2002 |
Yuan Q, Hill J, Hsiao J, Moffat K, Ouyang S, Cheng Z, Jiang J, Buell CR. Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion. Molecular Genetics and Genomics : Mgg. 267: 713-20. PMID 12207219 DOI: 10.1007/s00438-002-0706-1 |
0.393 |
|
| 2002 |
Fouts DE, Abramovitch RB, Alfano JR, Baldo AM, Buell CR, Cartinhour S, Chatterjee AK, D'Ascenzo M, Gwinn ML, Lazarowitz SG, Lin NC, Martin GB, Rehm AH, Schneider DJ, van Dijk K, et al. Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor. Proceedings of the National Academy of Sciences of the United States of America. 99: 2275-80. PMID 11854524 DOI: 10.1073/Pnas.032514099 |
0.33 |
|
| 2001 |
Stupar RM, Lilly JW, Town CD, Cheng Z, Kaul S, Buell CR, Jiang J. Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats Proceedings of the National Academy of Sciences of the United States of America. 98: 5099-5103. PMID 11309509 DOI: 10.1073/Pnas.091110398 |
0.336 |
|
| 2001 |
Yuan Q, Quackenbush J, Sultana R, Pertea M, Salzberg SL, Buell CR. Rice bioinformatics. Analysis of rice sequence data and leveraging the data to other plant species Plant Physiology. 125: 1166-1174. PMID 11244096 DOI: 10.1104/Pp.125.3.1166 |
0.508 |
|
| 1999 |
Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, et al. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Nature. 402: 761-8. PMID 10617197 DOI: 10.1038/45471 |
0.624 |
|
| 1998 |
Buell CR. Arabidopsis: A weed leading the field of plant-pathogen interactions Plant Physiology and Biochemistry. 36: 177-186. DOI: 10.1016/S0981-9428(98)80102-2 |
0.316 |
|
| 1993 |
Buell CR, Anderson AJ. Expression of the aggA locus of Pseudomonas putida in vitro and in planta as detected by the reporter gene, xylE. Molecular Plant-Microbe Interactions : Mpmi. 6: 331-40. PMID 8324250 |
0.523 |
|
| 1992 |
Buell CR, Anderson AJ. Genetic analysis of the aggA locus involved in agglutination and adherence of Pseudomonas putida, a beneficial fluorescent pseudomonad. Molecular Plant-Microbe Interactions : Mpmi. 5: 154-62. PMID 1617198 |
0.547 |
|
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