| Year |
Citation |
Score |
| 2024 |
Meili CH, TagElDein MA, Jones AL, Moon CD, Andrews C, Kirk MR, Janssen PH, J Yeoman C, Grace S, Borgogna J-LC, Foote AP, Nagy YI, Kashef MT, Yassin AS, Elshahed MS, et al. Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores. Applied and Environmental Microbiology. e0149223. PMID 38299813 DOI: 10.1128/aem.01492-23 |
0.548 |
|
| 2024 |
Jones AL, Pratt CJ, Meili CH, Soo RM, Hugenholtz P, Elshahed MS, Youssef NH. Anaerobic gut fungal communities in marsupial hosts. Mbio. e0337023. PMID 38259066 DOI: 10.1128/mbio.03370-23 |
0.541 |
|
| 2023 |
Meili CH, Jones AL, Arreola AX, Habel J, Pratt CJ, Hanafy RA, Wang Y, Yassin AS, TagElDein MA, Moon CD, Janssen PH, Shrestha M, Rajbhandari P, Nagler M, Vinzelj JM, ... ... Elshahed MS, et al. Patterns and determinants of the global herbivorous mycobiome. Nature Communications. 14: 3798. PMID 37365172 DOI: 10.1038/s41467-023-39508-z |
0.549 |
|
| 2023 |
Jones AL, Clayborn J, Pribil E, Foote AP, Montogomery D, Elshahed MS, Youssef NH. Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity. Environmental Microbiology. PMID 37305988 DOI: 10.1111/1462-2920.16443 |
0.516 |
|
| 2023 |
Pratt CJ, Chandler EE, Youssef NH, Elshahed MS. gen. nov, sp. nov. and gen. nov, sp. nov., two novel, deep-branching anaerobic gut fungal genera from tortoise faeces. International Journal of Systematic and Evolutionary Microbiology. 73. PMID 37252853 DOI: 10.1099/ijsem.0.005921 |
0.548 |
|
| 2023 |
Mulay SA, Alexander WG, Hahn CR, Klingeman DM, Elshahed MS, Youssef NH, Podar M. Complete Genome Sequence of sp. Strain ZS1 from Zodletone Spring in Oklahoma, USA. Microbiology Resource Announcements. e0014523. PMID 37052391 DOI: 10.1128/mra.00145-23 |
0.552 |
|
| 2023 |
Hanafy RA, Wang Y, Stajich JE, Pratt CJ, Youssef NH, Elshahed MS. Phylogenomic analysis of the : proposal of fam. nov., fam. nov., and emended description of the families and . International Journal of Systematic and Evolutionary Microbiology. 73. PMID 36827202 DOI: 10.1099/ijsem.0.005735 |
0.514 |
|
| 2022 |
Young D, Joshi A, Huang L, Munk B, Wurzbacher C, Youssef NH, Elshahed MS, Moon CD, Ochsenreither K, Griffith GW, Callaghan TM, Sczyrba A, Lebuhn M, Flad V. Simultaneous Metabarcoding and Quantification of from Environmental Samples: Insights into Community Composition and Novel Lineages. Microorganisms. 10. PMID 36144352 DOI: 10.3390/microorganisms10091749 |
0.549 |
|
| 2022 |
Elshahed MS, Hanafy RA, Cheng Y, Dagar SS, Edwards JE, Flad V, Fliegerová KO, Griffith GW, Kittelmann S, Lebuhn M, O'Malley MA, Podmirseg SM, Solomon KV, Vinzelj J, Young D, et al. Characterization and rank assignment criteria for the anaerobic fungi (Neocallimastigomycota). International Journal of Systematic and Evolutionary Microbiology. 72. PMID 35852502 DOI: 10.1099/ijsem.0.005449 |
0.547 |
|
| 2022 |
Duncan KT, Elshahed MS, Sundstrom KD, Little SE, Youssef NH. Influence of tick sex and geographic region on the microbiome of Dermacentor variabilis collected from dogs and cats across the United States. Ticks and Tick-Borne Diseases. 13: 102002. PMID 35810549 DOI: 10.1016/j.ttbdis.2022.102002 |
0.551 |
|
| 2022 |
Hanafy RA, Dagar SS, Griffith GW, Pratt CJ, Youssef NH, Elshahed MS. Taxonomy of the anaerobic gut fungi (): a review of classification criteria and description of current taxa. International Journal of Systematic and Evolutionary Microbiology. 72. PMID 35776761 DOI: 10.1099/ijsem.0.005322 |
0.546 |
|
| 2022 |
Hahn CR, Farag IF, Murphy CL, Podar M, Elshahed MS, Youssef NH. Microbial Diversity and Sulfur Cycling in an Early Earth Analogue: From Ancient Novelty to Modern Commonality. Mbio. e0001622. PMID 35258328 DOI: 10.1128/mbio.00016-22 |
0.547 |
|
| 2021 |
Murphy CL, Yang R, Decker T, Cavalliere C, Andreev V, Bircher N, Cornell J, Dohmen R, Pratt CJ, Grinnell A, Higgs J, Jett C, Gillett E, Khadka R, Mares S, ... ... Elshahed MS, et al. Genomes of novel Myxococcota reveal severely curtailed machineries for predation and cellular differentiation. Applied and Environmental Microbiology. AEM0170621. PMID 34524899 DOI: 10.1128/AEM.01706-21 |
0.532 |
|
| 2021 |
Yadav A, Hahn CR, Elshahed MS, Youssef NH. Five Metagenome-Assembled Genomes of the Rare Phylum CSSED10-310 from Zodletone Spring (Oklahoma, USA). Microbiology Resource Announcements. 10: e0041421. PMID 34197190 DOI: 10.1128/MRA.00414-21 |
0.514 |
|
| 2021 |
Hanafy RA, Youssef NH, Elshahed MS. gen. nov, sp. nov., a novel polycentric genus of anaerobic gut fungi from the faeces of a wild blackbuck antelope. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34161217 DOI: 10.1099/ijsem.0.004832 |
0.559 |
|
| 2021 |
Yadav A, Borrelli JC, Elshahed MS, Youssef NH. Genomic analysis of family UBA6911 (Group 18 Acidobacteria) expands the metabolic capacities of the phylum and highlights adaptations to terrestrial habitats. Applied and Environmental Microbiology. AEM0094721. PMID 34160232 DOI: 10.1128/AEM.00947-21 |
0.544 |
|
| 2021 |
Murphy CL, Biggerstaff J, Eichhorn A, Ewing E, Shahan R, Soriano D, Stewart S, VanMol K, Walker R, Walters P, Elshahed MS, Youssef NH. Genomic characterization of three novel Desulfobacterota classes expand the metabolic and phylogenetic diversity of the Phylum. Environmental Microbiology. PMID 34056821 DOI: 10.1111/1462-2920.15614 |
0.535 |
|
| 2021 |
Murphy CL, Sheremet A, Dunfield PF, Spear JR, Stepanauskas R, Woyke T, Elshahed MS, Youssef NH. Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities. Mbio. 12. PMID 34006650 DOI: 10.1128/mBio.00985-21 |
0.571 |
|
| 2020 |
Stabel M, Hanafy RA, Schweitzer T, Greif M, Aliyu H, Flad V, Young D, Lebuhn M, Elshahed MS, Ochsenreither K, Youssef NH. gen. nov, sp. nov., the First Cultured Representative of the Uncultured SK4 Clade from Aoudad Sheep and Alpaca. Microorganisms. 8. PMID 33167420 DOI: 10.3390/microorganisms8111734 |
0.554 |
|
| 2020 |
Beam JP, Becraft ED, Brown JM, Schulz F, Jarett JK, Bezuidt O, Poulton NJ, Clark K, Dunfield PF, Ravin NV, Spear JR, Hedlund BP, Kormas KA, Sievert SM, Elshahed MS, et al. Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN. Frontiers in Microbiology. 11: 1848. PMID 33013724 DOI: 10.3389/Fmicb.2020.01848 |
0.395 |
|
| 2020 |
Hanafy RA, Johnson B, Youssef NH, Elshahed MS. Assessing anaerobic gut fungal diversity in herbivores using D1/D2 large ribosomal subunit sequencing and multi-year isolation. Environmental Microbiology. PMID 32656919 DOI: 10.1111/1462-2920.15164 |
0.554 |
|
| 2020 |
Hanafy RA, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Dagar SS, Griffith GW, Elshahed MS, Youssef NH. Seven new Neocallimastigomycota genera from wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum. Mycologia. 1-28. PMID 32057282 DOI: 10.1080/00275514.2019.1696619 |
0.593 |
|
| 2020 |
Murphy CL, Youssef NH, Hartson S, Elshahed MS. The extraradical proteins of Rhizophagus irregularis: A shotgun proteomics approach. Fungal Biology. 124: 91-101. PMID 32008757 DOI: 10.1016/J.Funbio.2019.12.001 |
0.526 |
|
| 2020 |
Yadav A, Vilcáez J, Farag IF, Johnson B, Mueller K, Youssef NH, Elshahed MS. Candidatus Mcinerneyibacterium aminivorans gen. nov., sp. nov., the first representative of the candidate phylum Mcinerneyibacteriota phyl. nov. recovered from a high temperature, high salinity tertiary oil reservoir in north central Oklahoma, USA. Systematic and Applied Microbiology. 126057. PMID 31987701 DOI: 10.1016/J.Syapm.2020.126057 |
0.637 |
|
| 2019 |
Wang Y, Youssef NH, Couger MB, Hanafy RA, Elshahed MS, Stajich JE. Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes. Msystems. 4. PMID 31455637 DOI: 10.1128/mSystems.00247-19 |
0.558 |
|
| 2019 |
Murphy CL, Youssef NH, Hanafy RA, Couger MB, Stajich JE, Wang Y, Baker K, Dagar SS, Griffith GW, Farag IF, Callaghan TM, Elshahed MS. Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage. Applied and Environmental Microbiology. PMID 31126947 DOI: 10.1128/Aem.00988-19 |
0.628 |
|
| 2019 |
Youssef NH, Farag IF, Hahn CR, Jarett J, Becraft E, Eloe-Fadrosh E, Lightfoot J, Bourgeois A, Cole T, Ferrante S, Truelock M, Marsh W, Jamaleddine M, Ricketts S, Simpson R, ... ... Elshahed M, et al. Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities. Applied and Environmental Microbiology. PMID 30902854 DOI: 10.1128/Aem.00110-19 |
0.627 |
|
| 2019 |
Youssef NH, Farag IF, Rudy S, Mulliner A, Walker K, Caldwell F, Miller M, Hoff W, Elshahed M. The Wood-Ljungdahl pathway as a key component of metabolic versatility in Candidate phylum Bipolaricaulota (Acetothermia, OP1). Environmental Microbiology Reports. PMID 30888727 DOI: 10.1111/1758-2229.12753 |
0.564 |
|
| 2018 |
Youssef NH, Farag IF, Hahn CR, Premathilake H, Fry E, Hart M, Huffaker K, Bird E, Hambright J, Hoff WD, Elshahed MS. Candidatus Krumholzbacterium zodletonensis gen. nov., sp nov, the first representative of the candidate phylum Krumholzbacterota phyl. nov. recovered from an anoxic sulfidic spring using genome resolved metagenomics. Systematic and Applied Microbiology. PMID 30477901 DOI: 10.1016/J.Syapm.2018.11.002 |
0.596 |
|
| 2018 |
Eraqi WA, ElRakaiby MT, Megahed SA, Yousef NH, Elshahed MS, Yassin AS. The Nile River Microbiome Reveals a Remarkably Stable Community Between Wet and Dry Seasons, and Sampling Sites, in a Large Urban Metropolis (Cairo, Egypt). Omics : a Journal of Integrative Biology. 22: 553-564. PMID 30106354 DOI: 10.1089/Omi.2018.0090 |
0.37 |
|
| 2018 |
Hanafy RA, Elshahed MS, Youssef NH. Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer. Mycologia. 1-13. PMID 29969376 DOI: 10.1080/00275514.2018.1466610 |
0.611 |
|
| 2018 |
Hanafy RA, Johnson B, Elshahed MS, Youssef NH. Anaeromyces contortus, sp. nov., a new anaerobic gut fungal species (Neocallimastigomycota) isolated from the feces of cow and goat. Mycologia. 1-11. PMID 29944464 DOI: 10.1080/00275514.2018.1465773 |
0.605 |
|
| 2018 |
Calkins SS, Elledge NC, Mueller KE, Marek SM, Couger MB, Elshahed MS, Youssef NH. Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus Pecoramyces ruminantium strain C1A. Peerj. 6: e4276. PMID 29404209 DOI: 10.7717/Peerj.4276 |
0.561 |
|
| 2018 |
Vilcáez J, York J, Youssef N, Elshahed M. Stimulation of methanogenic crude oil biodegradation in depleted oil reservoirs Fuel. 232: 581-590. DOI: 10.1016/J.Fuel.2018.06.018 |
0.521 |
|
| 2017 |
Hanafy RA, Elshahed MS, Liggenstoffer AS, Griffith GW, Youssef NH. Pecoramyces ruminantium, gen. nov., sp. nov., an anaerobic gut fungus from the feces of cattle and sheep. Mycologia. 1-13. PMID 28494211 DOI: 10.1080/00275514.2017.1317190 |
0.632 |
|
| 2017 |
Morrison JM, Baker KD, Zamor RM, Nikolai S, Elshahed MS, Youssef NH. Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA). Plos One. 12: e0177488. PMID 28493994 DOI: 10.1371/Journal.Pone.0177488 |
0.589 |
|
| 2017 |
Ranganathan A, Smith OP, Youssef NH, Struchtemeyer CG, Atiyeh HK, Elshahed MS. Utilizing Anaerobic Fungi for Two-stage Sugar Extraction and Biofuel Production from Lignocellulosic Biomass. Frontiers in Microbiology. 8: 635. PMID 28443088 DOI: 10.3389/Fmicb.2017.00635 |
0.773 |
|
| 2017 |
Farag IF, Youssef NH, Elshahed MS. Global distribution patterns and pangenomic diversity of the candidate phylum "Latescibacteria" (WS3). Applied and Environmental Microbiology. PMID 28314726 DOI: 10.1128/Aem.00521-17 |
0.616 |
|
| 2017 |
Morrison JM, Murphy CL, Baker K, Zamor RM, Nikolai SJ, Wilder S, Elshahed MS, Youssef NH. Microbial communities mediating algal detritus turnover under anaerobic conditions. Peerj. 5: e2803. PMID 28097050 DOI: 10.7717/Peerj.2803 |
0.593 |
|
| 2016 |
Morrison JM, Elshahed MS, Youssef N. A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungus Orpinomyces sp. strain C1A. Peerj. 4: e2289. PMID 27547582 DOI: 10.7717/Peerj.2289 |
0.535 |
|
| 2016 |
Morrison JM, Elshahed MS, Youssef NH. Defined enzyme cocktail from the anaerobic fungus Orpinomyces sp. strain C1A effectively releases sugars from pretreated corn stover and switchgrass. Scientific Reports. 6: 29217. PMID 27381262 DOI: 10.1038/Srep29217 |
0.569 |
|
| 2016 |
Calkins S, Elledge NC, Hanafy RA, Elshahed MS, Youssef N. A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates. Journal of Microbiological Methods. PMID 27288952 DOI: 10.1016/J.Mimet.2016.05.019 |
0.54 |
|
| 2015 |
Couger MB, Hanafy RA, Edens C, Budd C, French DP, Hoff WD, Elshahed MS, Youssef NH. Draft Genome of the Arthrobacter sp. Strain Edens01. Genome Announcements. 3. PMID 26679586 DOI: 10.1128/Genomea.01475-15 |
0.586 |
|
| 2015 |
Couger MB, Hanafy RA, Mitacek RM, Budd C, French DP, Hoff WD, Elshahed MS, Youssef NH. The Draft Genome Sequence of Xanthomonas sp. Strain Mitacek01 Expands the Pangenome of a Genus of Plant Pathogens. Genome Announcements. 3. PMID 26659686 DOI: 10.1128/Genomea.01450-15 |
0.598 |
|
| 2015 |
Couger MB, Youssef NH, Struchtemeyer CG, Liggenstoffer AS, Elshahed MS. Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A. Biotechnology For Biofuels. 8: 208. PMID 26649073 DOI: 10.1186/S13068-015-0390-0 |
0.785 |
|
| 2015 |
Spain AM, Elshahed MS, Najar FZ, Krumholz LR. Metatranscriptomic analysis of a high-sulfide aquatic spring reveals insights into sulfur cycling and unexpected aerobic metabolism. Peerj. 3: e1259. PMID 26417542 DOI: 10.7717/Peerj.1259 |
0.391 |
|
| 2015 |
Couger MB, Hurlbut A, Murphy CL, Budd C, French DP, Hoff WD, Elshahed MS, Youssef NH. Draft Genome Sequence of the Environmental Isolate Chryseobacterium sp. Hurlbut01. Genome Announcements. 3. PMID 26383650 DOI: 10.1128/Genomea.01071-15 |
0.576 |
|
| 2015 |
Coveley S, Elshahed MS, Youssef NH. Response of the rare biosphere to environmental stressors in a highly diverse ecosystem (Zodletone spring, OK, USA). Peerj. 3: e1182. PMID 26312178 DOI: 10.7717/Peerj.1182 |
0.601 |
|
| 2015 |
Youssef NH, Couger MB, McCully AL, Criado AE, Elshahed MS. Assessing the global phylum level diversity within the bacterial domain: A review. Journal of Advanced Research. 6: 269-82. PMID 26257925 DOI: 10.1016/J.Jare.2014.10.005 |
0.615 |
|
| 2015 |
Youssef NH, Farag IF, Rinke C, Hallam SJ, Woyke T, Elshahed MS. In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3). Plos One. 10: e0127499. PMID 26039074 DOI: 10.1371/Journal.Pone.0127499 |
0.609 |
|
| 2015 |
Najjari A, Elshahed MS, Cherif A, Youssef NH. Patterns and determinants of halophilic archaea (class halobacteria) diversity in tunisian endorheic salt lakes and sebkhet systems. Applied and Environmental Microbiology. 81: 4432-41. PMID 25911472 DOI: 10.1128/Aem.01097-15 |
0.61 |
|
| 2015 |
Youssef NH, Rinke C, Stepanauskas R, Farag I, Woyke T, Elshahed MS. Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'. The Isme Journal. 9: 447-60. PMID 25083931 DOI: 10.1038/Ismej.2014.141 |
0.607 |
|
| 2014 |
Struchtemeyer CG, Ranganathan A, Couger MB, Liggenstoffer AS, Youssef NH, Elshahed MS. Survival of the anaerobic fungus Orpinomyces sp. strain C1A after prolonged air exposure. Scientific Reports. 4: 6892. PMID 25367149 DOI: 10.1038/Srep06892 |
0.773 |
|
| 2014 |
Gruninger RJ, Puniya AK, Callaghan TM, Edwards JE, Youssef N, Dagar SS, Fliegerova K, Griffith GW, Forster R, Tsang A, McAllister T, Elshahed MS. Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. Fems Microbiology Ecology. 90: 1-17. PMID 25046344 DOI: 10.1111/1574-6941.12383 |
0.572 |
|
| 2014 |
Liggenstoffer AS, Youssef NH, Wilkins MR, Elshahed MS. Evaluating the utility of hydrothermolysis pretreatment approaches in enhancing lignocellulosic biomass degradation by the anaerobic fungus Orpinomyces sp. strain C1A. Journal of Microbiological Methods. 104: 43-8. PMID 24971799 DOI: 10.1016/J.Mimet.2014.06.010 |
0.596 |
|
| 2014 |
Farag IF, Davis JP, Youssef NH, Elshahed MS. Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8). Plos One. 9: e92139. PMID 24637619 DOI: 10.1371/Journal.Pone.0092139 |
0.614 |
|
| 2014 |
Youssef NH, Savage-Ashlock KN, McCully AL, Luedtke B, Shaw EI, Hoff WD, Elshahed MS. Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales. The Isme Journal. 8: 636-49. PMID 24048226 DOI: 10.1038/Ismej.2013.165 |
0.589 |
|
| 2014 |
Youssef NH, Elshahed MS. The phylum planctomycetes The Prokaryotes: Other Major Lineages of Bacteria and the Archaea. 2147483647: 759-810. DOI: 10.1007/978-3-642-38954-2_155 |
0.564 |
|
| 2013 |
Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS. The genome of the anaerobic fungus orpinomyces sp. strain c1a reveals the unique evolutionary history of a remarkable plant biomass degrader Applied and Environmental Microbiology. 79: 4620-4634. PMID 23709508 DOI: 10.1128/Aem.00821-13 |
0.8 |
|
| 2012 |
Davis JP, Struchtemeyer CG, Elshahed MS. Bacterial communities associated with production facilities of two newly drilled thermogenic natural gas wells in the Barnett Shale (Texas, USA). Microbial Ecology. 64: 942-54. PMID 22622766 DOI: 10.1007/S00248-012-0073-3 |
0.789 |
|
| 2012 |
Youssef N, Steidley BL, Elshahed MS. Novel high-rank phylogenetic lineages within a sulfur spring (Zodletone Spring, Oklahoma), revealed using a combined pyrosequencing-sanger approach. Applied and Environmental Microbiology. 78: 2677-88. PMID 22307312 DOI: 10.1128/Aem.00002-12 |
0.608 |
|
| 2012 |
Youssef NH, Ashlock-Savage KN, Elshahed MS. Phylogenetic diversities and community structure of members of the extremely halophilic Archaea (order Halobacteriales) in multiple saline sediment habitats. Applied and Environmental Microbiology. 78: 1332-44. PMID 22179255 DOI: 10.1128/Aem.07420-11 |
0.608 |
|
| 2012 |
Struchtemeyer CG, Elshahed MS. Bacterial communities associated with hydraulic fracturing fluids in thermogenic natural gas wells in North Central Texas, USA. Fems Microbiology Ecology. 81: 13-25. PMID 22066833 DOI: 10.1111/J.1574-6941.2011.01196.X |
0.771 |
|
| 2012 |
Struchtemeyer CG, Morrison MD, Elshahed MS. A critical assessment of the efficacy of biocides used during the hydraulic fracturing process in shale natural gas wells International Biodeterioration and Biodegradation. 71: 15-21. DOI: 10.1016/J.Ibiod.2012.01.013 |
0.776 |
|
| 2011 |
Youssef NH, Blainey PC, Quake SR, Elshahed MS. Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone spring, Oklahoma) Applied and Environmental Microbiology. 77: 7804-7814. PMID 21908640 DOI: 10.1128/Aem.06059-11 |
0.613 |
|
| 2011 |
Struchtemeyer CG, Davis JP, Elshahed MS. Influence of the drilling mud formulation process on the bacterial communities in thermogenic natural gas wells of the Barnett Shale. Applied and Environmental Microbiology. 77: 4744-53. PMID 21602366 DOI: 10.1128/Aem.00233-11 |
0.788 |
|
| 2011 |
Sheik CS, Beasley WH, Elshahed MS, Zhou X, Luo Y, Krumholz LR. Effect of warming and drought on grassland microbial communities. The Isme Journal. 5: 1692-700. PMID 21451582 DOI: 10.1038/Ismej.2011.32 |
0.35 |
|
| 2011 |
Bühring SI, Sievert SM, Jonkers HM, Ertefai T, Elshahed MS, Krumholz LR, Hinrichs KU. Insights into chemotaxonomic composition and carbon cycling of phototrophic communities in an artesian sulfur-rich spring (Zodletone, Oklahoma, USA), a possible analog for ancient microbial mat systems Geobiology. 9: 166-179. PMID 21244620 DOI: 10.1111/J.1472-4669.2010.00268.X |
0.384 |
|
| 2010 |
Youssef NH, Couger MB, Elshahed MS. Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): the role of the rare biosphere. Plos One. 5: e12414. PMID 20865128 DOI: 10.1371/Journal.Pone.0012414 |
0.562 |
|
| 2010 |
Liggenstoffer AS, Youssef NH, Couger MB, Elshahed MS. Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores. The Isme Journal. 4: 1225-35. PMID 20410935 DOI: 10.1038/Ismej.2010.49 |
0.62 |
|
| 2010 |
Savage KN, Krumholz LR, Gieg LM, Parisi VA, Suflita JM, Allen J, Philp RP, Elshahed MS. Biodegradation of low-molecular-weight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community patterns. Fems Microbiology Ecology. 72: 485-95. PMID 20402777 DOI: 10.1111/J.1574-6941.2010.00866.X |
0.4 |
|
| 2010 |
Heise SR, Elshahed MS, Little SE. Bacterial diversity in amblyomma americanum (Acari: Ixodidae) with a focus on members of the genus rickettsia Journal of Medical Entomology. 47: 258-268. PMID 20380308 DOI: 10.1603/Me09197 |
0.408 |
|
| 2009 |
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys Applied and Environmental Microbiology. 75: 5227-5236. PMID 19561178 DOI: 10.1128/Aem.00592-09 |
0.528 |
|
| 2009 |
Spain AM, Krumholz LR, Elshahed MS. Abundance, composition, diversity and novelty of soil Proteobacteria. The Isme Journal. 3: 992-1000. PMID 19404326 DOI: 10.1038/Ismej.2009.43 |
0.4 |
|
| 2009 |
Davis JP, Youssef NH, Elshahed MS. Assessment of the diversity, abundance, and ecological distribution of members of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity. Applied and Environmental Microbiology. 75: 4139-48. PMID 19395567 DOI: 10.1128/Aem.00137-09 |
0.628 |
|
| 2009 |
Youssef N, Elshahed MS, McInerney MJ. Microbial processes in oil fields: culprits, problems, and opportunities. Advances in Applied Microbiology. 66: 141-251. PMID 19203651 DOI: 10.1016/S0065-2164(08)00806-X |
0.655 |
|
| 2009 |
Youssef NH, Elshahed MS. Diversity rankings among bacterial lineages in soil. The Isme Journal. 3: 305-13. PMID 18987677 DOI: 10.1038/Ismej.2008.106 |
0.556 |
|
| 2008 |
Elshahed MS, Youssef NH, Spain AM, Sheik C, Najar FZ, Sukharnikov LO, Roe BA, Davis JP, Schloss PD, Bailey VL, Krumholz LR. Novelty and uniqueness patterns of rare members of the soil biosphere Applied and Environmental Microbiology. 74: 5422-5428. PMID 18606799 DOI: 10.1128/Aem.00410-08 |
0.574 |
|
| 2008 |
Youssef NH, Elshahed MS. Species richness in soil bacterial communities: a proposed approach to overcome sample size bias. Journal of Microbiological Methods. 75: 86-91. PMID 18585806 DOI: 10.1016/J.Mimet.2008.05.009 |
0.545 |
|
| 2008 |
Savage KN, Krumholz LR, Oren A, Elshahed MS. Halosarcina pallida gen. nov., sp. nov., a halophilic archaeon from a low-salt, sulfide-rich spring. International Journal of Systematic and Evolutionary Microbiology. 58: 856-60. PMID 18398182 DOI: 10.1099/Ijs.0.65398-0 |
0.381 |
|
| 2007 |
Spain AM, Peacock AD, Istok JD, Elshahed MS, Najar FZ, Roe BA, White DC, Krumholz LR. Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer Applied and Environmental Microbiology. 73: 4892-4904. PMID 17557842 DOI: 10.1128/Aem.00331-07 |
0.421 |
|
| 2007 |
Elshahed MS, Youssef NH, Luo Q, Najar FZ, Roe BA, Sisk TM, Bühring SI, Hinrichs KU, Krumholz LR. Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma Applied and Environmental Microbiology. 73: 4707-4716. PMID 17545322 DOI: 10.1128/Aem.00591-07 |
0.65 |
|
| 2007 |
Savage KN, Krumholz LR, Oren A, Elshahed MS. Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. International Journal of Systematic and Evolutionary Microbiology. 57: 19-24. PMID 17220434 DOI: 10.1099/Ijs.0.64464-0 |
0.387 |
|
| 2005 |
Elshahed MS, Najar FZ, Aycock M, Qu C, Roe BA, Krumholz LR. Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): Insights into the genome of a member of the novel candidate division OD1 Applied and Environmental Microbiology. 71: 7598-7602. PMID 16269812 DOI: 10.1128/Aem.71.11.7598-7602.2005 |
0.445 |
|
| 2005 |
Luo Q, Krumholz LR, Najar FZ, Peacock AD, Roe BA, White DC, Elshahed MS. Diversity of the microeukaryotic community in sulfide-rich zodletone spring (Oklahoma) Applied and Environmental Microbiology. 71: 6175-6184. PMID 16204536 DOI: 10.1128/Aem.71.10.6175-6184.2005 |
0.426 |
|
| 2005 |
Struchtemeyer CG, Elshahed MS, Duncan KE, McInerney MJ. Evidence for aceticlastic methanogenesis in the presence of sulfate in a gas condensate-contaminated aquifer. Applied and Environmental Microbiology. 71: 5348-53. PMID 16151124 DOI: 10.1128/Aem.71.9.5348-5353.2005 |
0.777 |
|
| 2004 |
Elshahed MS, Savage KN, Oren A, Gutierrez MC, Ventosa A, Krumholz LR. Haloferax sulfurifontis sp. nov., a halophilic archaeon isolated from a sulfide- and sulfur-rich spring. International Journal of Systematic and Evolutionary Microbiology. 54: 2275-9. PMID 15545470 DOI: 10.1099/Ijs.0.63211-0 |
0.329 |
|
| 2004 |
Elshahed MS, Najar FZ, Roe BA, Oren A, Dewers TA, Krumholz LR. Survey of Archaeal Diversity Reveals an Abundance of Halophilic Archaea in a Low-Salt, Sulfide- and Sulfur-Rich Spring Applied and Environmental Microbiology. 70: 2230-2239. PMID 15066817 DOI: 10.1128/Aem.70.4.2230-2239.2004 |
0.434 |
|
| 2004 |
Senko JM, Campbell BS, Henriksen JR, Elshahed MS, Dewers TA, Krumholz LR. Barite deposition resulting from phototrophic sulfide-oxidizing bacterial activity Geochimica Et Cosmochimica Acta. 68: 773-780. DOI: 10.1016/J.Gca.2003.07.008 |
0.337 |
|
| 2003 |
Elshahed MS, Senko JM, Najar FZ, Kenton SM, Roe BA, Dewers TA, Spear JR, Krumholz LR. Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring. Applied and Environmental Microbiology. 69: 5609-21. PMID 12957951 DOI: 10.1128/Aem.69.9.5609-5621.2003 |
0.445 |
|
| 2001 |
Elshahed MS, McInerney MJ. Benzoate fermentation by the anaerobic bacterium Syntrophus aciditrophicus in the absence of hydrogen-using microorganisms. Applied and Environmental Microbiology. 67: 5520-5. PMID 11722901 DOI: 10.1128/Aem.67.12.5520-5525.2001 |
0.559 |
|
| 2001 |
Elshahed MS, Gieg LM, Mcinerney MJ, Suflita JM. Signature metabolites attesting to the in situ attenuation of alkylbenzenes in anaerobic environments. Environmental Science & Technology. 35: 682-9. PMID 11349278 DOI: 10.1021/Es001571U |
0.599 |
|
| 2001 |
Elshahed MS, McInerney MJ. Is interspecies hydrogen transfer needed for toluene degradation under sulfate-reducing conditions? Fems Microbiology Ecology. 35: 163-169. PMID 11295455 DOI: 10.1111/J.1574-6941.2001.Tb00800.X |
0.556 |
|
| 2001 |
Elshahed MS, Bhupathiraju VK, Wofford NQ, Nanny MA, McInerney MJ. Metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by "Syntrophus aciditrophicus" strain SB in syntrophic association with H(2)-using microorganisms. Applied and Environmental Microbiology. 67: 1728-38. PMID 11282627 DOI: 10.1128/Aem.67.4.1728-1738.2001 |
0.593 |
|
| Show low-probability matches. |