| Year |
Citation |
Score |
| 2024 |
Meili CH, TagElDein MA, Jones AL, Moon CD, Andrews C, Kirk MR, Janssen PH, J Yeoman C, Grace S, Borgogna J-LC, Foote AP, Nagy YI, Kashef MT, Yassin AS, Elshahed MS, ... Youssef NH, et al. Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores. Applied and Environmental Microbiology. e0149223. PMID 38299813 DOI: 10.1128/aem.01492-23 |
0.614 |
|
| 2024 |
Jones AL, Pratt CJ, Meili CH, Soo RM, Hugenholtz P, Elshahed MS, Youssef NH. Anaerobic gut fungal communities in marsupial hosts. Mbio. e0337023. PMID 38259066 DOI: 10.1128/mbio.03370-23 |
0.602 |
|
| 2023 |
Meili CH, Jones AL, Arreola AX, Habel J, Pratt CJ, Hanafy RA, Wang Y, Yassin AS, TagElDein MA, Moon CD, Janssen PH, Shrestha M, Rajbhandari P, Nagler M, Vinzelj JM, ... ... Youssef NH, et al. Patterns and determinants of the global herbivorous mycobiome. Nature Communications. 14: 3798. PMID 37365172 DOI: 10.1038/s41467-023-39508-z |
0.627 |
|
| 2023 |
Jones AL, Clayborn J, Pribil E, Foote AP, Montogomery D, Elshahed MS, Youssef NH. Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity. Environmental Microbiology. PMID 37305988 DOI: 10.1111/1462-2920.16443 |
0.583 |
|
| 2023 |
Pratt CJ, Chandler EE, Youssef NH, Elshahed MS. gen. nov, sp. nov. and gen. nov, sp. nov., two novel, deep-branching anaerobic gut fungal genera from tortoise faeces. International Journal of Systematic and Evolutionary Microbiology. 73. PMID 37252853 DOI: 10.1099/ijsem.0.005921 |
0.633 |
|
| 2023 |
Mulay SA, Alexander WG, Hahn CR, Klingeman DM, Elshahed MS, Youssef NH, Podar M. Complete Genome Sequence of sp. Strain ZS1 from Zodletone Spring in Oklahoma, USA. Microbiology Resource Announcements. e0014523. PMID 37052391 DOI: 10.1128/mra.00145-23 |
0.639 |
|
| 2023 |
Hanafy RA, Wang Y, Stajich JE, Pratt CJ, Youssef NH, Elshahed MS. Phylogenomic analysis of the : proposal of fam. nov., fam. nov., and emended description of the families and . International Journal of Systematic and Evolutionary Microbiology. 73. PMID 36827202 DOI: 10.1099/ijsem.0.005735 |
0.605 |
|
| 2022 |
Young D, Joshi A, Huang L, Munk B, Wurzbacher C, Youssef NH, Elshahed MS, Moon CD, Ochsenreither K, Griffith GW, Callaghan TM, Sczyrba A, Lebuhn M, Flad V. Simultaneous Metabarcoding and Quantification of from Environmental Samples: Insights into Community Composition and Novel Lineages. Microorganisms. 10. PMID 36144352 DOI: 10.3390/microorganisms10091749 |
0.623 |
|
| 2022 |
Elshahed MS, Hanafy RA, Cheng Y, Dagar SS, Edwards JE, Flad V, Fliegerová KO, Griffith GW, Kittelmann S, Lebuhn M, O'Malley MA, Podmirseg SM, Solomon KV, Vinzelj J, Young D, ... Youssef NH, et al. Characterization and rank assignment criteria for the anaerobic fungi (Neocallimastigomycota). International Journal of Systematic and Evolutionary Microbiology. 72. PMID 35852502 DOI: 10.1099/ijsem.0.005449 |
0.627 |
|
| 2022 |
Duncan KT, Elshahed MS, Sundstrom KD, Little SE, Youssef NH. Influence of tick sex and geographic region on the microbiome of Dermacentor variabilis collected from dogs and cats across the United States. Ticks and Tick-Borne Diseases. 13: 102002. PMID 35810549 DOI: 10.1016/j.ttbdis.2022.102002 |
0.623 |
|
| 2022 |
Hanafy RA, Dagar SS, Griffith GW, Pratt CJ, Youssef NH, Elshahed MS. Taxonomy of the anaerobic gut fungi (): a review of classification criteria and description of current taxa. International Journal of Systematic and Evolutionary Microbiology. 72. PMID 35776761 DOI: 10.1099/ijsem.0.005322 |
0.635 |
|
| 2022 |
Hahn CR, Farag IF, Murphy CL, Podar M, Elshahed MS, Youssef NH. Microbial Diversity and Sulfur Cycling in an Early Earth Analogue: From Ancient Novelty to Modern Commonality. Mbio. e0001622. PMID 35258328 DOI: 10.1128/mbio.00016-22 |
0.605 |
|
| 2021 |
Elkenawy NM, Youssef NH, Aziz RK, Amin MA, Yassin AS. Draft genome sequence of a prodigiosin-hyperproducing Serratia marcescens strain isolated from Cairo, Egypt. G3 (Bethesda, Md.). 11. PMID 34568929 DOI: 10.1093/g3journal/jkab284 |
0.317 |
|
| 2021 |
Murphy CL, Yang R, Decker T, Cavalliere C, Andreev V, Bircher N, Cornell J, Dohmen R, Pratt CJ, Grinnell A, Higgs J, Jett C, Gillett E, Khadka R, Mares S, ... ... Youssef NH, et al. Genomes of novel Myxococcota reveal severely curtailed machineries for predation and cellular differentiation. Applied and Environmental Microbiology. AEM0170621. PMID 34524899 DOI: 10.1128/AEM.01706-21 |
0.618 |
|
| 2021 |
Yadav A, Hahn CR, Elshahed MS, Youssef NH. Five Metagenome-Assembled Genomes of the Rare Phylum CSSED10-310 from Zodletone Spring (Oklahoma, USA). Microbiology Resource Announcements. 10: e0041421. PMID 34197190 DOI: 10.1128/MRA.00414-21 |
0.601 |
|
| 2021 |
Hanafy RA, Youssef NH, Elshahed MS. gen. nov, sp. nov., a novel polycentric genus of anaerobic gut fungi from the faeces of a wild blackbuck antelope. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34161217 DOI: 10.1099/ijsem.0.004832 |
0.64 |
|
| 2021 |
Yadav A, Borrelli JC, Elshahed MS, Youssef NH. Genomic analysis of family UBA6911 (Group 18 Acidobacteria) expands the metabolic capacities of the phylum and highlights adaptations to terrestrial habitats. Applied and Environmental Microbiology. AEM0094721. PMID 34160232 DOI: 10.1128/AEM.00947-21 |
0.621 |
|
| 2021 |
Murphy CL, Biggerstaff J, Eichhorn A, Ewing E, Shahan R, Soriano D, Stewart S, VanMol K, Walker R, Walters P, Elshahed MS, Youssef NH. Genomic characterization of three novel Desulfobacterota classes expand the metabolic and phylogenetic diversity of the Phylum. Environmental Microbiology. PMID 34056821 DOI: 10.1111/1462-2920.15614 |
0.609 |
|
| 2021 |
Murphy CL, Sheremet A, Dunfield PF, Spear JR, Stepanauskas R, Woyke T, Elshahed MS, Youssef NH. Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities. Mbio. 12. PMID 34006650 DOI: 10.1128/mBio.00985-21 |
0.653 |
|
| 2020 |
Stabel M, Hanafy RA, Schweitzer T, Greif M, Aliyu H, Flad V, Young D, Lebuhn M, Elshahed MS, Ochsenreither K, Youssef NH. gen. nov, sp. nov., the First Cultured Representative of the Uncultured SK4 Clade from Aoudad Sheep and Alpaca. Microorganisms. 8. PMID 33167420 DOI: 10.3390/microorganisms8111734 |
0.634 |
|
| 2020 |
Hanafy RA, Johnson B, Youssef NH, Elshahed MS. Assessing anaerobic gut fungal diversity in herbivores using D1/D2 large ribosomal subunit sequencing and multi-year isolation. Environmental Microbiology. PMID 32656919 DOI: 10.1111/1462-2920.15164 |
0.588 |
|
| 2020 |
Hanafy RA, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Dagar SS, Griffith GW, Elshahed MS, Youssef NH. Seven new Neocallimastigomycota genera from wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum. Mycologia. 1-28. PMID 32057282 DOI: 10.1080/00275514.2019.1696619 |
0.635 |
|
| 2020 |
Murphy CL, Youssef NH, Hartson S, Elshahed MS. The extraradical proteins of Rhizophagus irregularis: A shotgun proteomics approach. Fungal Biology. 124: 91-101. PMID 32008757 DOI: 10.1016/J.Funbio.2019.12.001 |
0.564 |
|
| 2020 |
Yadav A, Vilcáez J, Farag IF, Johnson B, Mueller K, Youssef NH, Elshahed MS. Candidatus Mcinerneyibacterium aminivorans gen. nov., sp. nov., the first representative of the candidate phylum Mcinerneyibacteriota phyl. nov. recovered from a high temperature, high salinity tertiary oil reservoir in north central Oklahoma, USA. Systematic and Applied Microbiology. 126057. PMID 31987701 DOI: 10.1016/J.Syapm.2020.126057 |
0.672 |
|
| 2019 |
Wang Y, Youssef NH, Couger MB, Hanafy RA, Elshahed MS, Stajich JE. Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes. Msystems. 4. PMID 31455637 DOI: 10.1128/mSystems.00247-19 |
0.642 |
|
| 2019 |
Murphy CL, Youssef NH, Hanafy RA, Couger MB, Stajich JE, Wang Y, Baker K, Dagar SS, Griffith GW, Farag IF, Callaghan TM, Elshahed MS. Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage. Applied and Environmental Microbiology. PMID 31126947 DOI: 10.1128/Aem.00988-19 |
0.66 |
|
| 2019 |
Youssef NH, Farag IF, Hahn CR, Jarett J, Becraft E, Eloe-Fadrosh E, Lightfoot J, Bourgeois A, Cole T, Ferrante S, Truelock M, Marsh W, Jamaleddine M, Ricketts S, Simpson R, et al. Genomic characterization of candidate division LCP-89 reveals an atypical cell wall structure, microcompartment production, and dual respiratory and fermentative capacities. Applied and Environmental Microbiology. PMID 30902854 DOI: 10.1128/Aem.00110-19 |
0.662 |
|
| 2019 |
Youssef NH, Farag IF, Rudy S, Mulliner A, Walker K, Caldwell F, Miller M, Hoff W, Elshahed M. The Wood-Ljungdahl pathway as a key component of metabolic versatility in Candidate phylum Bipolaricaulota (Acetothermia, OP1). Environmental Microbiology Reports. PMID 30888727 DOI: 10.1111/1758-2229.12753 |
0.598 |
|
| 2018 |
Youssef NH, Farag IF, Hahn CR, Premathilake H, Fry E, Hart M, Huffaker K, Bird E, Hambright J, Hoff WD, Elshahed MS. Candidatus Krumholzbacterium zodletonensis gen. nov., sp nov, the first representative of the candidate phylum Krumholzbacterota phyl. nov. recovered from an anoxic sulfidic spring using genome resolved metagenomics. Systematic and Applied Microbiology. PMID 30477901 DOI: 10.1016/J.Syapm.2018.11.002 |
0.637 |
|
| 2018 |
Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The Isme Journal. PMID 30323263 DOI: 10.1038/S41396-018-0282-Y |
0.418 |
|
| 2018 |
Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, ... ... Youssef N, et al. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. The Journal of Eukaryotic Microbiology. PMID 30257078 DOI: 10.1111/Jeu.12691 |
0.344 |
|
| 2018 |
Hanafy RA, Elshahed MS, Youssef NH. Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer. Mycologia. 1-13. PMID 29969376 DOI: 10.1080/00275514.2018.1466610 |
0.648 |
|
| 2018 |
Hanafy RA, Johnson B, Elshahed MS, Youssef NH. Anaeromyces contortus, sp. nov., a new anaerobic gut fungal species (Neocallimastigomycota) isolated from the feces of cow and goat. Mycologia. 1-11. PMID 29944464 DOI: 10.1080/00275514.2018.1465773 |
0.644 |
|
| 2018 |
Calkins SS, Elledge NC, Mueller KE, Marek SM, Couger MB, Elshahed MS, Youssef NH. Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus Pecoramyces ruminantium strain C1A. Peerj. 6: e4276. PMID 29404209 DOI: 10.7717/Peerj.4276 |
0.599 |
|
| 2018 |
Vilcáez J, York J, Youssef N, Elshahed M. Stimulation of methanogenic crude oil biodegradation in depleted oil reservoirs Fuel. 232: 581-590. DOI: 10.1016/J.Fuel.2018.06.018 |
0.6 |
|
| 2017 |
Hanafy RA, Elshahed MS, Liggenstoffer AS, Griffith GW, Youssef NH. Pecoramyces ruminantium, gen. nov., sp. nov., an anaerobic gut fungus from the feces of cattle and sheep. Mycologia. 1-13. PMID 28494211 DOI: 10.1080/00275514.2017.1317190 |
0.667 |
|
| 2017 |
Morrison JM, Baker KD, Zamor RM, Nikolai S, Elshahed MS, Youssef NH. Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA). Plos One. 12: e0177488. PMID 28493994 DOI: 10.1371/Journal.Pone.0177488 |
0.595 |
|
| 2017 |
Ranganathan A, Smith OP, Youssef NH, Struchtemeyer CG, Atiyeh HK, Elshahed MS. Utilizing Anaerobic Fungi for Two-stage Sugar Extraction and Biofuel Production from Lignocellulosic Biomass. Frontiers in Microbiology. 8: 635. PMID 28443088 DOI: 10.3389/Fmicb.2017.00635 |
0.778 |
|
| 2017 |
Farag IF, Youssef NH, Elshahed MS. Global distribution patterns and pangenomic diversity of the candidate phylum "Latescibacteria" (WS3). Applied and Environmental Microbiology. PMID 28314726 DOI: 10.1128/Aem.00521-17 |
0.648 |
|
| 2017 |
Morrison JM, Murphy CL, Baker K, Zamor RM, Nikolai SJ, Wilder S, Elshahed MS, Youssef NH. Microbial communities mediating algal detritus turnover under anaerobic conditions. Peerj. 5: e2803. PMID 28097050 DOI: 10.7717/Peerj.2803 |
0.61 |
|
| 2016 |
Calkins S, Couger MB, Jackson C, Zandler J, Hudgins GC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. Genomics Data. 10: 91-96. PMID 27766204 DOI: 10.1016/J.Gdata.2016.10.003 |
0.415 |
|
| 2016 |
Moghadam F, Couger MB, Russ B, Ramsey R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis. Genomics Data. 10: 63-68. PMID 27699151 DOI: 10.1016/J.Gdata.2016.09.006 |
0.447 |
|
| 2016 |
Avramov AP, Couger MB, Hartley EL, Land C, Wellendorf R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential. Genomics Data. 10: 54-60. PMID 27699150 DOI: 10.1016/J.Gdata.2016.09.005 |
0.441 |
|
| 2016 |
Miller NT, Fuller D, Couger MB, Bagazinski M, Boyne P, Devor RC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential. Genomics Data. 9: 154-9. PMID 27583206 DOI: 10.1016/J.Gdata.2016.08.004 |
0.432 |
|
| 2016 |
Hanafy RA, Couger MB, Baker K, Murphy C, O'Kane SD, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates. Genomics Data. 9: 148-53. PMID 27583205 DOI: 10.1016/J.Gdata.2016.08.006 |
0.424 |
|
| 2016 |
Morrison JM, Elshahed MS, Youssef N. A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungus Orpinomyces sp. strain C1A. Peerj. 4: e2289. PMID 27547582 DOI: 10.7717/Peerj.2289 |
0.609 |
|
| 2016 |
Morrison JM, Elshahed MS, Youssef NH. Defined enzyme cocktail from the anaerobic fungus Orpinomyces sp. strain C1A effectively releases sugars from pretreated corn stover and switchgrass. Scientific Reports. 6: 29217. PMID 27381262 DOI: 10.1038/Srep29217 |
0.604 |
|
| 2016 |
Calkins S, Elledge NC, Hanafy RA, Elshahed MS, Youssef N. A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates. Journal of Microbiological Methods. PMID 27288952 DOI: 10.1016/J.Mimet.2016.05.019 |
0.611 |
|
| 2016 |
Couger MB, Wright A, Lutter EI, Youssef N. Draft Genome Sequences of Five Pseudomonas aeruginosa Clinical Strains Isolated from Sputum Samples from Cystic Fibrosis Patients. Genome Announcements. 4. PMID 26823574 DOI: 10.1128/Genomea.01528-15 |
0.414 |
|
| 2015 |
Couger MB, Hanafy RA, Edens C, Budd C, French DP, Hoff WD, Elshahed MS, Youssef NH. Draft Genome of the Arthrobacter sp. Strain Edens01. Genome Announcements. 3. PMID 26679586 DOI: 10.1128/Genomea.01475-15 |
0.631 |
|
| 2015 |
Couger MB, Hanafy RA, Mitacek RM, Budd C, French DP, Hoff WD, Elshahed MS, Youssef NH. The Draft Genome Sequence of Xanthomonas sp. Strain Mitacek01 Expands the Pangenome of a Genus of Plant Pathogens. Genome Announcements. 3. PMID 26659686 DOI: 10.1128/Genomea.01450-15 |
0.64 |
|
| 2015 |
Couger MB, Youssef NH, Struchtemeyer CG, Liggenstoffer AS, Elshahed MS. Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A. Biotechnology For Biofuels. 8: 208. PMID 26649073 DOI: 10.1186/S13068-015-0390-0 |
0.79 |
|
| 2015 |
Couger MB, Hurlbut A, Murphy CL, Budd C, French DP, Hoff WD, Elshahed MS, Youssef NH. Draft Genome Sequence of the Environmental Isolate Chryseobacterium sp. Hurlbut01. Genome Announcements. 3. PMID 26383650 DOI: 10.1128/Genomea.01071-15 |
0.615 |
|
| 2015 |
Coveley S, Elshahed MS, Youssef NH. Response of the rare biosphere to environmental stressors in a highly diverse ecosystem (Zodletone spring, OK, USA). Peerj. 3: e1182. PMID 26312178 DOI: 10.7717/Peerj.1182 |
0.617 |
|
| 2015 |
Youssef NH, Couger MB, McCully AL, Criado AE, Elshahed MS. Assessing the global phylum level diversity within the bacterial domain: A review. Journal of Advanced Research. 6: 269-82. PMID 26257925 DOI: 10.1016/J.Jare.2014.10.005 |
0.641 |
|
| 2015 |
Youssef NH, Farag IF, Rinke C, Hallam SJ, Woyke T, Elshahed MS. In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3). Plos One. 10: e0127499. PMID 26039074 DOI: 10.1371/Journal.Pone.0127499 |
0.625 |
|
| 2015 |
Najjari A, Elshahed MS, Cherif A, Youssef NH. Patterns and determinants of halophilic archaea (class halobacteria) diversity in tunisian endorheic salt lakes and sebkhet systems. Applied and Environmental Microbiology. 81: 4432-41. PMID 25911472 DOI: 10.1128/Aem.01097-15 |
0.628 |
|
| 2015 |
Youssef NH, Rinke C, Stepanauskas R, Farag I, Woyke T, Elshahed MS. Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'. The Isme Journal. 9: 447-60. PMID 25083931 DOI: 10.1038/Ismej.2014.141 |
0.643 |
|
| 2014 |
Struchtemeyer CG, Ranganathan A, Couger MB, Liggenstoffer AS, Youssef NH, Elshahed MS. Survival of the anaerobic fungus Orpinomyces sp. strain C1A after prolonged air exposure. Scientific Reports. 4: 6892. PMID 25367149 DOI: 10.1038/Srep06892 |
0.777 |
|
| 2014 |
Gruninger RJ, Puniya AK, Callaghan TM, Edwards JE, Youssef N, Dagar SS, Fliegerova K, Griffith GW, Forster R, Tsang A, McAllister T, Elshahed MS. Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. Fems Microbiology Ecology. 90: 1-17. PMID 25046344 DOI: 10.1111/1574-6941.12383 |
0.643 |
|
| 2014 |
Liggenstoffer AS, Youssef NH, Wilkins MR, Elshahed MS. Evaluating the utility of hydrothermolysis pretreatment approaches in enhancing lignocellulosic biomass degradation by the anaerobic fungus Orpinomyces sp. strain C1A. Journal of Microbiological Methods. 104: 43-8. PMID 24971799 DOI: 10.1016/J.Mimet.2014.06.010 |
0.629 |
|
| 2014 |
Farag IF, Davis JP, Youssef NH, Elshahed MS. Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8). Plos One. 9: e92139. PMID 24637619 DOI: 10.1371/Journal.Pone.0092139 |
0.631 |
|
| 2014 |
Youssef NH, Savage-Ashlock KN, McCully AL, Luedtke B, Shaw EI, Hoff WD, Elshahed MS. Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales. The Isme Journal. 8: 636-49. PMID 24048226 DOI: 10.1038/Ismej.2013.165 |
0.626 |
|
| 2014 |
Youssef NH, Elshahed MS. The phylum planctomycetes The Prokaryotes: Other Major Lineages of Bacteria and the Archaea. 2147483647: 759-810. DOI: 10.1007/978-3-642-38954-2_155 |
0.645 |
|
| 2013 |
Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA, Najar FZ, Atiyeh HK, Wilkins MR, Elshahed MS. The genome of the anaerobic fungus orpinomyces sp. strain c1a reveals the unique evolutionary history of a remarkable plant biomass degrader Applied and Environmental Microbiology. 79: 4620-4634. PMID 23709508 DOI: 10.1128/Aem.00821-13 |
0.807 |
|
| 2013 |
Youssef N, Simpson DR, McInerney MJ, Duncan KE. In-situ lipopeptide biosurfactant production by Bacillus strains correlates with improved oil recovery in two oil wells approaching their economic limit of production International Biodeterioration and Biodegradation. 81: 127-132. DOI: 10.1016/J.Ibiod.2012.05.010 |
0.59 |
|
| 2012 |
Youssef N, Steidley BL, Elshahed MS. Novel high-rank phylogenetic lineages within a sulfur spring (Zodletone Spring, Oklahoma), revealed using a combined pyrosequencing-sanger approach. Applied and Environmental Microbiology. 78: 2677-88. PMID 22307312 DOI: 10.1128/Aem.00002-12 |
0.667 |
|
| 2012 |
Youssef NH, Ashlock-Savage KN, Elshahed MS. Phylogenetic diversities and community structure of members of the extremely halophilic Archaea (order Halobacteriales) in multiple saline sediment habitats. Applied and Environmental Microbiology. 78: 1332-44. PMID 22179255 DOI: 10.1128/Aem.07420-11 |
0.618 |
|
| 2011 |
Youssef NH, Blainey PC, Quake SR, Elshahed MS. Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone spring, Oklahoma) Applied and Environmental Microbiology. 77: 7804-7814. PMID 21908640 DOI: 10.1128/Aem.06059-11 |
0.648 |
|
| 2011 |
Youssef NH, Wofford N, McInerney MJ. Importance of the long-chain fatty acid beta-hydroxylating cytochrome P450 enzyme YbdT for lipopeptide biosynthesis in Bacillus subtilis strain OKB105. International Journal of Molecular Sciences. 12: 1767-86. PMID 21673922 DOI: 10.3390/Ijms12031767 |
0.537 |
|
| 2010 |
Youssef NH, Couger MB, Elshahed MS. Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): the role of the rare biosphere. Plos One. 5: e12414. PMID 20865128 DOI: 10.1371/Journal.Pone.0012414 |
0.587 |
|
| 2010 |
Liggenstoffer AS, Youssef NH, Couger MB, Elshahed MS. Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores. The Isme Journal. 4: 1225-35. PMID 20410935 DOI: 10.1038/Ismej.2010.49 |
0.645 |
|
| 2009 |
Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys Applied and Environmental Microbiology. 75: 5227-5236. PMID 19561178 DOI: 10.1128/Aem.00592-09 |
0.562 |
|
| 2009 |
Davis JP, Youssef NH, Elshahed MS. Assessment of the diversity, abundance, and ecological distribution of members of candidate division SR1 reveals a high level of phylogenetic diversity but limited morphotypic diversity. Applied and Environmental Microbiology. 75: 4139-48. PMID 19395567 DOI: 10.1128/Aem.00137-09 |
0.648 |
|
| 2009 |
Youssef N, Elshahed MS, McInerney MJ. Microbial processes in oil fields: culprits, problems, and opportunities. Advances in Applied Microbiology. 66: 141-251. PMID 19203651 DOI: 10.1016/S0065-2164(08)00806-X |
0.698 |
|
| 2009 |
Youssef NH, Elshahed MS. Diversity rankings among bacterial lineages in soil. The Isme Journal. 3: 305-13. PMID 18987677 DOI: 10.1038/Ismej.2008.106 |
0.59 |
|
| 2008 |
Elshahed MS, Youssef NH, Spain AM, Sheik C, Najar FZ, Sukharnikov LO, Roe BA, Davis JP, Schloss PD, Bailey VL, Krumholz LR. Novelty and uniqueness patterns of rare members of the soil biosphere Applied and Environmental Microbiology. 74: 5422-5428. PMID 18606799 DOI: 10.1128/Aem.00410-08 |
0.598 |
|
| 2008 |
Youssef NH, Elshahed MS. Species richness in soil bacterial communities: a proposed approach to overcome sample size bias. Journal of Microbiological Methods. 75: 86-91. PMID 18585806 DOI: 10.1016/J.Mimet.2008.05.009 |
0.58 |
|
| 2008 |
Nguyen TT, Youssef NH, McInerney MJ, Sabatini DA. Rhamnolipid biosurfactant mixtures for environmental remediation. Water Research. 42: 1735-43. PMID 18035390 DOI: 10.1016/J.Watres.2007.10.038 |
0.502 |
|
| 2007 |
Elshahed MS, Youssef NH, Luo Q, Najar FZ, Roe BA, Sisk TM, Bühring SI, Hinrichs KU, Krumholz LR. Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma Applied and Environmental Microbiology. 73: 4707-4716. PMID 17545322 DOI: 10.1128/Aem.00591-07 |
0.674 |
|
| 2007 |
Youssef NH, Nguyen T, Sabatini DA, McInerney MJ. Basis for formulating biosurfactant mixtures to achieve ultra low interfacial tension values against hydrocarbons. Journal of Industrial Microbiology & Biotechnology. 34: 497-507. PMID 17476539 DOI: 10.1007/S10295-007-0221-9 |
0.521 |
|
| 2007 |
Youssef N, Simpson DR, Duncan KE, McInerney MJ, Folmsbee M, Fincher T, Knapp RM. In situ biosurfactant production by Bacillus strains injected into a limestone petroleum reservoir. Applied and Environmental Microbiology. 73: 1239-47. PMID 17172458 DOI: 10.1128/Aem.02264-06 |
0.767 |
|
| 2005 |
Youssef NH, Duncan KE, McInerney MJ. Importance of 3-hydroxy fatty acid composition of lipopeptides for biosurfactant activity. Applied and Environmental Microbiology. 71: 7690-5. PMID 16332741 DOI: 10.1128/Aem.71.12.7690-7695.2005 |
0.546 |
|
| 2004 |
Youssef NH, Duncan KE, Nagle DP, Savage KN, Knapp RM, McInerney MJ. Comparison of methods to detect biosurfactant production by diverse microorganisms. Journal of Microbiological Methods. 56: 339-47. PMID 14967225 DOI: 10.1016/J.Mimet.2003.11.001 |
0.523 |
|
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