| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2024 |
Bonilla G, Morris A, Kundu S, Ducasse A, Jeffries NE, Chetal K, Yvanovich EE, Barghout R, Scadden D, Mansour MK, Kingston RE, Sykes DB, Mercier FE, Sadreyev RI. Leukemia aggressiveness is driven by chromatin remodeling and expression changes of core regulators. Biorxiv : the Preprint Server For Biology. PMID 38496490 DOI: 10.1101/2024.02.29.582846 |
0.01 |
|
| 2023 |
Zhu YP, Speir M, Tan Z, Lee JC, Nowell CJ, Chen AA, Amatullah H, Salinger AJ, Huang CJ, Wu G, Peng W, Askari K, Griffis E, Ghassemian M, Santini J, ... ... Sadreyev R, et al. NET formation is a default epigenetic program controlled by PAD4 in apoptotic neutrophils. Science Advances. 9: eadj1397. PMID 38117877 DOI: 10.1126/sciadv.adj1397 |
0.01 |
|
| 2023 |
Cetinbas M, Thai J, Filatava E, Gregory KE, Sadreyev RI. Long-term dysbiosis and fluctuations of gut microbiome in antibiotic treated preterm infants. Iscience. 26: 107995. PMID 37829203 DOI: 10.1016/j.isci.2023.107995 |
0.01 |
|
| 2023 |
Gray ZH, Chakraborty D, Duttweiler RR, Alekbaeva GD, Murphy SE, Chetal K, Ji F, Ferman BI, Honer MA, Wang Z, Myers C, Sun R, Kaniskan HÜ, Toma MM, Bondarenko EA, ... ... Sadreyev RI, et al. Epigenetic balance ensures mechanistic control of MLL amplification and rearrangement. Cell. 186: 4528-4545.e18. PMID 37788669 DOI: 10.1016/j.cell.2023.09.009 |
0.01 |
|
| 2023 |
Wang Y, Drum DL, Sun R, Zhang Y, Chen F, Sun F, Dal E, Yu L, Jia J, Arya S, Jia L, Fan S, Isakoff SJ, Kehlmann AM, Dotti G, ... ... Sadreyev RI, et al. Stressed target cancer cells drive nongenetic reprogramming of CAR T cells and solid tumor microenvironment. Nature Communications. 14: 5727. PMID 37714830 DOI: 10.1038/s41467-023-41282-x |
0.01 |
|
| 2023 |
Lin CJ, Herisson F, Le H, Jaafar N, Chetal K, Oram MK, Flynn KL, Gavrilles EP, Sadreyev RI, Schiffino FL, Tanzi RE. Mast cell deficiency improves cognition and enhances disease-associated microglia in 5XFAD mice. Cell Reports. 42: 113141. PMID 37713312 DOI: 10.1016/j.celrep.2023.113141 |
0.01 |
|
| 2023 |
Zhu Y, Wang R, Pappas AC, Seifert P, Savol A, Sadreyev RI, Sun D, Jakobs TC. Astrocytes in the Optic Nerve Are Heterogeneous in Their Reactivity to Glaucomatous Injury. Cells. 12. PMID 37681863 DOI: 10.3390/cells12172131 |
0.01 |
|
| 2023 |
Hoetker MS, Yagi M, Di Stefano B, Langerman J, Cristea S, Wong LP, Huebner AJ, Charlton J, Deng W, Haggerty C, Sadreyev RI, Meissner A, Michor F, Plath K, Hochedlinger K. H3K36 methylation maintains cell identity by regulating opposing lineage programmes. Nature Cell Biology. PMID 37460697 DOI: 10.1038/s41556-023-01191-z |
0.01 |
|
| 2023 |
Kfoury YS, Ji F, Jain E, Mazzola MC, Schiroli G, Papazian A, Mercier FE, Sykes DB, Kiem A, Randolph MA, Abdel-Wahab OI, Calvi LM, Sadreyev R, Scadden DT. The bone marrow stroma in human myelodysplastic syndrome reveals alterations that regulate disease progression. Blood Advances. PMID 37450380 DOI: 10.1182/bloodadvances.2022008268 |
0.01 |
|
| 2023 |
Guinn MT, Szuter ES, Yokose T, Ge J, Rosales IA, Chetal K, Sadreyev RI, Cuenca AG, Kreisel D, Sage PT, Russell PS, Madsen JC, Colvin RB, Alessandrini A. Intra-graft B cell differentiation during the development of tolerance to kidney allografts is associated with a regulatory B cell signature revealed by single cell transcriptomics. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. PMID 37295719 DOI: 10.1016/j.ajt.2023.05.036 |
0.01 |
|
| 2023 |
Rojas RA, Kutateladze AA, Plummer L, Stamou M, Keefe DL, Salnikov KB, Delaney A, Hall JE, Sadreyev R, Ji F, Fliers E, Gambosova K, Quinton R, Merino PM, Mericq V, et al. Phenotypic continuum between Waardenburg syndrome and idiopathic hypogonadotropic hypogonadism in humans with SOX10 variants. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 25: 100855. PMID 37272927 DOI: 10.1016/j.gim.2023.100855 |
0.01 |
|
| 2023 |
Rhee C, Scadden EW, Wong LP, Schiroli G, Mazzola MC, Chea PL, Kato H, Hoyer FF, Mistry M, Lee BK, Kim J, Nahrendorf M, Mansour M, Sykes DB, Sadreyev R, et al. Limited plasticity of monocyte fate and function associated with epigenetic scripting at the level of progenitors. Blood. PMID 37267513 DOI: 10.1182/blood.2023020257 |
0.01 |
|
| 2023 |
Gopal RK, Vantaku VR, Panda A, Reimer B, Rath S, To TL, Fisch AS, Cetinbas M, Livneh M, Calcaterra MJ, Gigliotti BJ, Pierce KA, Clish CB, Dias-Santagata D, Sadow PM, ... ... Sadreyev RI, et al. Effectors enabling adaptation to mitochondrial complex I loss in Hurthle cell carcinoma. Cancer Discovery. PMID 37262067 DOI: 10.1158/2159-8290.CD-22-0976 |
0.01 |
|
| 2023 |
Vyas CM, Sadreyev RI, Gatchel JR, Kang JH, Reynolds CF, Mischoulon D, Chang G, Hazra A, Manson JE, Blacker D, De Vivo I, Okereke OI. Pilot Study of Second-Generation DNA Methylation Epigenetic Markers in Relation to Cognitive and Neuropsychiatric Symptoms in Older Adults. Journal of Alzheimer's Disease : Jad. PMID 37212116 DOI: 10.3233/JAD-230093 |
0.01 |
|
| 2023 |
Smith CJ, Rendina DN, Kingsbury MA, Malacon KE, Nguyen DM, Tran JJ, Devlin BA, Raju RM, Clark MJ, Burgett L, Zhang JH, Cetinbas M, Sadreyev RI, Chen K, Iyer MS, et al. Microbial modulation via cross-fostering prevents the effects of pervasive environmental stressors on microglia and social behavior, but not the dopamine system. Molecular Psychiatry. PMID 37198262 DOI: 10.1038/s41380-023-02108-w |
0.01 |
|
| 2023 |
Bommakanti K, Seist R, Kukutla P, Cetinbas M, Batts S, Sadreyev RI, Stemmer-Rachamimov A, Brenner GJ, Stankovic KM. Comparative Transcriptomic Analysis of Archival Human Vestibular Schwannoma Tissue from Patients with and without Tinnitus. Journal of Clinical Medicine. 12. PMID 37048724 DOI: 10.3390/jcm12072642 |
0.01 |
|
| 2023 |
He S, Lei P, Kang W, Cheung P, Xu T, Mana M, Park CY, Wang H, Imada S, Russell JO, Wang J, Wang R, Zhou Z, Chetal K, Stas E, ... ... Sadreyev RI, et al. Stiffness Restricts the Stemness of the Intestinal Stem Cells and Skews Their Differentiation Towards Goblet Cells. Gastroenterology. PMID 36871599 DOI: 10.1053/j.gastro.2023.02.030 |
0.01 |
|
| 2023 |
Wang Y, Drum DL, Sun R, Zhang Y, Yu L, Jia L, Isakoff SJ, Kehlmann AM, Dal AE, Dotti G, Zheng H, Ferrone CR, Taghian AG, DeLeo AB, Zhang H, ... ... Sadreyev RI, et al. Stressed target cancer cells drive nongenetic reprogramming of CAR T cells and tumor microenvironment, overcoming multiple obstacles of CAR T therapy for solid tumors. Research Square. PMID 36865255 DOI: 10.21203/rs.3.rs-2595410/v1 |
0.01 |
|
| 2023 |
Yoon SH, Meyer MB, Arevalo Rivas C, Tekguc M, Zhang C, Wang JS, Castro Andrade CD, Strauss KE, Sato T, Benkusky N, Lee SM, Berdeaux R, Foretz M, Sundberg TB, Xavier RJ, ... ... Sadreyev RI, et al. A parathyroid hormone/salt-inducible kinase signaling axis controls renal vitamin D activation and organismal calcium homeostasis. The Journal of Clinical Investigation. PMID 36862513 DOI: 10.1172/JCI163627 |
0.01 |
|
| 2023 |
Janssen H, Kahles F, Liu D, Downey J, Koekkoek LL, Roudko V, D'Souza D, McAlpine CS, Halle L, Poller WC, Chan CT, He S, Mindur JE, Kiss MG, Singh S, ... ... Sadreyev RI, et al. Monocytes re-enter the bone marrow during fasting and alter the host response to infection. Immunity. PMID 36827982 DOI: 10.1016/j.immuni.2023.01.024 |
0.01 |
|
| 2023 |
Bilbo S, Smith C, Rendina D, Kingsbury M, Malacon K, Nguyen D, Tran J, Devlin B, Raju R, Clark M, Burgett L, Zhang J, Cetinbas M, Sadreyev R, Chen K, et al. Microbial modulation prevents the effects of pervasive environmental stressors on microglia and social behavior, but not the dopamine system. Research Square. PMID 36798238 DOI: 10.21203/rs.3.rs-2548369/v1 |
0.01 |
|
| 2023 |
Gnanaguru G, Tabor SJ, Bonilla GM, Sadreyev R, Yuda K, Köhl J, Connor KM. Microglia refine developing retinal astrocytic and vascular networks through the complement C3/C3aR axis. Development (Cambridge, England). PMID 36762625 DOI: 10.1242/dev.201047 |
0.01 |
|
| 2023 |
Kenkel WM, Kingsbury MA, Reinhart JM, Cetinbas M, Sadreyev RI, Carter CS, Perkeybile AM. Lasting consequences on physiology and social behavior following cesarean delivery in prairie voles. Hormones and Behavior. 150: 105314. PMID 36731301 DOI: 10.1016/j.yhbeh.2023.105314 |
0.01 |
|
| 2023 |
Generoso SF, Neguembor MV, Hershberg EA, Sadreyev RI, Kurimoto K, Yabuta Y, Ricci R, Audergon P, Bauer M, Saitou M, Hochedlinger K, Beliveau BJ, Cosma MP, Lee JT, Payer B. Cohesin controls X chromosome structure remodeling and X-reactivation during mouse iPSC-reprogramming. Proceedings of the National Academy of Sciences of the United States of America. 120: e2213810120. PMID 36669113 DOI: 10.1073/pnas.2213810120 |
0.01 |
|
| 2023 |
Su KW, Cetinbas M, Martin VM, Virkud YV, Seay H, Ndahayo R, Rosow R, Elkort M, Gupta B, Kramer E, Pronchick T, Reuter S, Sadreyev RI, Huang JL, Shreffler WG, et al. Early infancy dysbiosis in food protein-induced enterocolitis syndrome: a prospective cohort study. Allergy. PMID 36635218 DOI: 10.1111/all.15644 |
0.01 |
|
| 2022 |
Asbjornsdottir B, Miranda-Ribera A, Fiorentino M, Konno T, Cetinbas M, Lan J, Sadreyev RI, Gudmundsson LS, Gottfredsson M, Lauth B, Birgisdottir BE, Fasano A. Prophylactic Effect of Bovine Colostrum on Intestinal Microbiota and Behavior in Wild-Type and Zonulin Transgenic Mice. Biomedicines. 11. PMID 36672598 DOI: 10.3390/biomedicines11010091 |
0.01 |
|
| 2022 |
Ji F, Van Rechem C, Whetstine JR, Sadreyev RI. Computational workflow for integrative analyses of DNA replication timing, epigenomic, and transcriptomic data. Star Protocols. 3: 101827. PMID 36386876 DOI: 10.1016/j.xpro.2022.101827 |
0.01 |
|
| 2022 |
Nakazawa H, Wong LP, Shelton L, Sadreyev R, Kaneki M. Farnesysltransferase Inhibitor Prevents Burn Injury-Induced Metabolome Changes in Muscle. Metabolites. 12. PMID 36144205 DOI: 10.3390/metabo12090800 |
0.01 |
|
| 2022 |
McAlpine CS, Kiss MG, Zuraikat FM, Cheek D, Schiroli G, Amatullah H, Huynh P, Bhatti MZ, Wong LP, Yates AG, Poller WC, Mindur JE, Chan CT, Janssen H, Downey J, ... ... Sadreyev RI, et al. Sleep exerts lasting effects on hematopoietic stem cell function and diversity. The Journal of Experimental Medicine. 219. PMID 36129517 DOI: 10.1084/jem.20220081 |
0.01 |
|
| 2022 |
Amatullah H, Fraschilla I, Digumarthi S, Huang J, Adiliaghdam F, Bonilla G, Wong LP, Rivard ME, Beauchamp C, Mercier V, Goyette P, Sadreyev RI, Anthony RM, Rioux JD, Jeffrey KL. Epigenetic reader SP140 loss of function drives Crohn's disease due to uncontrolled macrophage topoisomerases. Cell. 185: 3232-3247.e18. PMID 35952671 DOI: 10.1016/j.cell.2022.06.048 |
0.01 |
|
| 2022 |
Zhu C, Lee JY, Woo JZ, Xu L, Nguyenla X, Yamashiro LH, Ji F, Biering SB, Van Dis E, Gonzalez F, Fox D, Wehri E, Rustagi A, Pinsky BA, Schaletzky J, ... ... Sadreyev RI, et al. An intranasal ASO therapeutic targeting SARS-CoV-2. Nature Communications. 13: 4503. PMID 35922434 DOI: 10.1038/s41467-022-32216-0 |
0.01 |
|
| 2022 |
Kim MH, Kim MY, Salloum S, Qian T, Wong LP, Xu M, Lee Y, Shroff SG, Sadreyev RI, Corey KE, Baumert TF, Hoshida Y, Chung RT. Atorvastatin favorably modulates a clinical hepatocellular carcinoma risk gene signature. Hepatology Communications. PMID 35712812 DOI: 10.1002/hep4.1991 |
0.01 |
|
| 2022 |
Poller WC, Downey J, Mooslechner AA, Khan N, Li L, Chan CT, McAlpine CS, Xu C, Kahles F, He S, Janssen H, Mindur JE, Singh S, Kiss MG, Alonso-Herranz L, ... ... Sadreyev RI, et al. Brain motor and fear circuits regulate leukocytes during acute stress. Nature. PMID 35636458 DOI: 10.1038/s41586-022-04890-z |
0.01 |
|
| 2022 |
Ji F, Bonilla G, Krykbaev R, Ruvkun G, Tabach Y, Sadreyev RI. DEPCOD: a tool to detect and visualize co-evolution of protein domains. Nucleic Acids Research. PMID 35536332 DOI: 10.1093/nar/gkac349 |
0.01 |
|
| 2022 |
Franklin R, Guo Y, He S, Chen M, Ji F, Zhou X, Frankhouser D, Do BT, Chiem C, Jang M, Blanco MA, Vander Heiden MG, Rockne RC, Ninova M, Sykes DB, ... ... Sadreyev RI, et al. Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity. Nature Communications. 13: 2350. PMID 35487911 DOI: 10.1038/s41467-022-29730-6 |
0.01 |
|
| 2022 |
Adiliaghdam F, Amatullah H, Digumarthi S, Saunders TL, Rahman RU, Wong LP, Sadreyev R, Droit L, Paquette J, Goyette P, Rioux JD, Hodin R, Mihindukulasuriya KA, Handley SA, Jeffrey KL. Human enteric viruses autonomously shape inflammatory bowel disease phenotype through divergent innate immunomodulation. Science Immunology. 7: eabn6660. PMID 35394816 DOI: 10.1126/sciimmunol.abn6660 |
0.01 |
|
| 2022 |
Sebastian C, Ferrer C, Serra M, Choi JE, Ducano N, Mira A, Shah MS, Stopka SA, Perciaccante AJ, Isella C, Moya-Rull D, Vara-Messler M, Giordano S, Maldi E, Desai N, ... ... Sadreyev RI, et al. A non-dividing cell population with high pyruvate dehydrogenase kinase activity regulates metabolic heterogeneity and tumorigenesis in the intestine. Nature Communications. 13: 1503. PMID 35314684 DOI: 10.1038/s41467-022-29085-y |
0.01 |
|
| 2022 |
Mealer RG, Williams SE, Noel M, Yang B, D'Souza AK, Nakata T, Graham DB, Creasey EA, Cetinbas M, Sadreyev RI, Scolnick EM, Woo CM, Smoller JW, Xavier RJ, Cummings RD. The schizophrenia-associated variant in SLC39A8 alters protein glycosylation in the mouse brain. Molecular Psychiatry. PMID 35260802 DOI: 10.1038/s41380-022-01490-1 |
0.01 |
|
| 2022 |
Nakatani T, Lin J, Ji F, Ettinger A, Pontabry J, Tokoro M, Altamirano-Pacheco L, Fiorentino J, Mahammadov E, Hatano Y, Van Rechem C, Chakraborty D, Ruiz-Morales ER, Arguello Pascualli PY, Scialdone A, ... ... Sadreyev RI, et al. DNA replication fork speed underlies cell fate changes and promotes reprogramming. Nature Genetics. PMID 35256805 DOI: 10.1038/s41588-022-01023-0 |
0.01 |
|
| 2022 |
Williams SE, Noel M, Lehoux S, Cetinbas M, Xavier RJ, Sadreyev RI, Scolnick EM, Smoller JW, Cummings RD, Mealer RG. Mammalian brain glycoproteins exhibit diminished glycan complexity compared to other tissues. Nature Communications. 13: 275. PMID 35022400 DOI: 10.1038/s41467-021-27781-9 |
0.01 |
|
| 2022 |
Guo N, McDermott KD, Shih YT, Zanga H, Ghosh D, Herber C, Meara WR, Coleman JH, Zagouras A, Wong LP, Sadreyev RI, Gonçalves JT, Sahay A. Transcriptional regulation of neural stem cell expansion in adult hippocampus. Elife. 11. PMID 34982030 DOI: 10.7554/eLife.72195 |
0.01 |
|
| 2022 |
Sohn J, Milosevic J, Brouse T, Aziz N, Elkhoury J, Wang S, Hauschild A, van Gastel N, Cetinbas M, Tufa SF, Keene DR, Sadreyev R, Pu WT, Sykes DB. A new murine model of Barth Syndrome neutropenia links TAFAZZIN deficiency to increased ER stress induced apoptosis. Blood Advances. PMID 34979560 DOI: 10.1182/bloodadvances.2021005720 |
0.01 |
|
| 2022 |
Hsieh FK, Ji F, Damle M, Sadreyev RI, Kingston RE. HERVH-derived lncRNAs negatively regulate chromatin targeting and remodeling mediated by CHD7. Life Science Alliance. 5. PMID 34663690 DOI: 10.26508/lsa.202101127 |
0.01 |
|
| 2021 |
Rohde D, Vandoorne K, Lee IH, Grune J, Zhang S, McAlpine CS, Schloss MJ, Nayar R, Courties G, Frodermann V, Wojtkiewicz G, Honold L, Chen Q, Schmidt S, Iwamoto Y, ... ... Sadreyev RI, et al. Bone marrow endothelial dysfunction promotes myeloid cell expansion in cardiovascular disease. Nature Cardiovascular Research. 1: 28-44. PMID 35747128 DOI: 10.1038/s44161-021-00002-8 |
0.01 |
|
| 2021 |
Mori T, Verma R, Nakamoto-Matsubara R, Siu KT, Panaroni C, Fulzele KS, Mukaihara K, Onyewadume C, Maebius A, Kato H, Wong LP, Sadreyev RI, Scadden DT, Raje NS. Low NCOR2 levels in multiple myeloma patients drive multidrug resistance via MYC upregulation. Blood Cancer Journal. 11: 194. PMID 34864816 DOI: 10.1038/s41408-021-00589-y |
0.01 |
|
| 2021 |
Matilainen O, Ribeiro ARS, Verbeeren J, Cetinbas M, Sood H, Sadreyev RI, Garcia SMDA. Loss of muscleblind splicing factor shortens Caenorhabditis elegans lifespan by reducing the activity of p38 MAPK/PMK-1 and transcription factors ATF-7 and Nrf/SKN-1. Genetics. 219. PMID 34849877 DOI: 10.1093/genetics/iyab114 |
0.01 |
|
| 2021 |
Mehrotra I, Serena G, Cetinbas M, Kenyon V, Martin VM, Harshman SG, Zomorrodi AR, Sadreyev RI, Fasano A, Leonard MM. Characterization of the blood microbiota in children with Celiac disease. Current Research in Microbial Sciences. 2: 100069. PMID 34841359 DOI: 10.1016/J.CRMICR.2021.100069 |
0.01 |
|
| 2021 |
Van Rechem C, Ji F, Chakraborty D, Black JC, Sadreyev RI, Whetstine JR. Collective regulation of chromatin modifications predicts replication timing during cell cycle. Cell Reports. 37: 109799. PMID 34610305 DOI: 10.1016/j.celrep.2021.109799 |
0.01 |
|
| 2021 |
Kfoury YS, Ji F, Mazzola M, Sykes DB, Scherer AK, Anselmo A, Akiyama Y, Mercier F, Severe N, Kokkaliaris KD, Zhao T, Brouse T, Saez B, Seidl J, Papazian A, ... ... Sadreyev RI, et al. tiRNA signaling via stress-regulated vesicle transfer in the hematopoietic niche. Cell Stem Cell. PMID 34551362 DOI: 10.1016/j.stem.2021.08.014 |
0.01 |
|
| 2021 |
Kim MH, Salloum S, Wang JY, Wong LP, Regan J, Lefteri K, Manickas-Hill Z, Gao C, Li JZ, Sadreyev RI, Yu XG, Chung RT. Type I, II, and III Interferon Signatures Correspond to Coronavirus Disease 2019 Severity. The Journal of Infectious Diseases. 224: 777-782. PMID 34467988 DOI: 10.1093/infdis/jiab288 |
0.01 |
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| 2021 |
Yagi M, Ji F, Charlton J, Cristea S, Messemer K, Horwitz N, Di Stefano B, Tsopoulidis N, Hoetker MS, Huebner AJ, Bar-Nur O, Almada AE, Yamamoto M, Patelunas A, Goldhamer DJ, ... ... Sadreyev RI, et al. Dissecting dual roles of MyoD during lineage conversion to mature myocytes and myogenic stem cells. Genes & Development. PMID 34413137 DOI: 10.1101/gad.348678.121 |
0.01 |
|
| 2021 |
McAlpine CS, Park J, Griciuc A, Kim E, Choi SH, Iwamoto Y, Kiss MG, Christie KA, Vinegoni C, Poller WC, Mindur JE, Chan CT, He S, Janssen H, Wong LP, ... ... Sadreyev RI, et al. Astrocytic interleukin-3 programs microglia and limits Alzheimer's disease. Nature. PMID 34262178 DOI: 10.1038/s41586-021-03734-6 |
0.01 |
|
| 2021 |
Kukutla P, Ahmed SG, DuBreuil DM, Abdelnabi A, Cetinbas M, Fulci G, Aldikacti B, Stemmer-Rachamimov A, Plotkin SR, Wainger B, Sadreyev RI, Brenner GJ. Transcriptomic signature of painful human neurofibromatosis type 2 schwannomas. Annals of Clinical and Translational Neurology. PMID 34053190 DOI: 10.1002/acn3.51386 |
0.01 |
|
| 2021 |
Kim MH, Salloum S, Wang JY, Lai Ping W, Regan J, Lefteri K, Manickas-Hill Z, Gao C, Li JZ, Sadreyev RI, Yu XG, Chung RT. Type I, II, and III interferon signatures correspond to COVID-19 disease severity. The Journal of Infectious Diseases. PMID 34036353 DOI: 10.1093/infdis/jiab288 |
0.01 |
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| 2021 |
Stanley TL, Fourman LT, Wong LP, Sadreyev R, Billingsley JM, Feldpausch MN, Zheng I, Pan CS, Boutin A, Lee H, Corey KE, Torriani M, Kleiner DE, Chung RT, Hadigan CM, et al. Growth Hormone Releasing Hormone Reduces Circulating Markers of Immune Activation in Parallel with Effects on Hepatic Immune Pathways in Individuals with HIV-Infection and Nonalcoholic Fatty Liver Disease. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33852720 DOI: 10.1093/cid/ciab019 |
0.01 |
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| 2021 |
Kim MH, Salloum S, Wang JY, Wong LP, Regan J, Lefteri K, Manickas-Hill Z, Li JZ, Sadreyev RI, Yu XG, Chung RT. Type I, II, and III interferon signatures correspond to COVID-19 disease severity. Medrxiv : the Preprint Server For Health Sciences. PMID 33758894 DOI: 10.1101/2021.03.10.21253317 |
0.01 |
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| 2021 |
Choi JE, Sebastian C, Ferrer CM, Lewis CA, Sade-Feldman M, LaSalle T, Gonye A, Lopez BGC, Abdelmoula WM, Regan MS, Cetinbas M, Pascual G, Wojtkiewicz GR, Silveira GG, Boon R, ... ... Sadreyev RI, et al. A unique subset of glycolytic tumour-propagating cells drives squamous cell carcinoma. Nature Metabolism. 3: 182-195. PMID 33619381 DOI: 10.1038/s42255-021-00350-6 |
0.01 |
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| 2021 |
Rojas RA, Kutateladze AA, Plummer L, Stamou M, Keefe DL, Salnikov KB, Delaney A, Hall JE, Sadreyev R, Ji F, Fliers E, Gambosova K, Quinton R, Merino PM, Mericq V, et al. Phenotypic continuum between Waardenburg syndrome and idiopathic hypogonadotropic hypogonadism in humans with SOX10 variants. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 33442024 DOI: 10.1038/s41436-020-01051-3 |
0.01 |
|
| 2020 |
Xiao L, Salem JE, Clauss S, Hanley A, Bapat A, Hulsmans M, Iwamoto Y, Wojtkiewicz G, Cetinbas M, Schloss MJ, Tedeschi J, Lebrun-Vignes B, Lundby A, Sadreyev RI, Moslehi JJ, et al. Ibrutinib-Mediated Atrial Fibrillation Due to Inhibition of CSK. Circulation. PMID 33092403 DOI: 10.1161/CIRCULATIONAHA.120.049210 |
0.01 |
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| 2020 |
Wang L, Sinnott-Armstrong N, Wagschal A, Wark AR, Camporez JP, Perry RJ, Ji F, Sohn Y, Oh J, Wu S, Chery J, Moud BN, Saadat A, Dankel SN, Mellgren G, ... ... Sadreyev RI, et al. A MicroRNA Linking Human Positive Selection and Metabolic Disorders. Cell. PMID 33058756 DOI: 10.1016/j.cell.2020.09.017 |
0.01 |
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| 2020 |
Van Rechem C, Ji F, Mishra S, Chakraborty D, Murphy SE, Dillingham ME, Sadreyev RI, Whetstine JR. The lysine demethylase KDM4A controls the cell-cycle expression of replicative canonical histone genes. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194624. PMID 32798738 DOI: 10.1016/J.Bbagrm.2020.194624 |
0.01 |
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| 2020 |
Borren NZ, Plichta D, Joshi AD, Bonilla G, Sadreyev R, Vlamakis H, Xavier RJ, Ananthakrishnan AN. Multi-"-Omics" Profiling in Patients With Quiescent Inflammatory Bowel Disease Identifies Biomarkers Predicting Relapse. Inflammatory Bowel Diseases. PMID 32766830 DOI: 10.1093/Ibd/Izaa183 |
0.01 |
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| 2020 |
Chan CT, Fenn AM, Harder NK, Mindur JE, McAlpine CS, Patel J, Valet C, Rattik S, Iwamoto Y, He S, Anzai A, Kahles F, Poller WC, Janssen H, Wong LP, ... ... Sadreyev RI, et al. Liver X receptors are required for thymic resilience and T cell output. The Journal of Experimental Medicine. 217. PMID 32716519 DOI: 10.1084/jem.20200318 |
0.01 |
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| 2020 |
Sato T, Verma S, Andrade CDC, Omeara M, Campbell N, Wang JS, Cetinbas M, Lang A, Ausk BJ, Brooks DJ, Sadreyev RI, Kronenberg HM, Lagares D, Uda Y, Pajevic PD, et al. A FAK/HDAC5 signaling axis controls osteocyte mechanotransduction. Nature Communications. 11: 3282. PMID 32612176 DOI: 10.1038/S41467-020-17099-3 |
0.01 |
|
| 2020 |
Rahimi RA, Nepal K, Cetinbas M, Sadreyev RI, Luster AD. Distinct functions of tissue-resident and circulating memory Th2 cells in allergic airway disease. The Journal of Experimental Medicine. 217. PMID 32579670 DOI: 10.1084/Jem.20190865 |
0.01 |
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| 2020 |
Sen P, Wilkie AR, Ji F, Yang Y, Taylor IJ, Velazquez-Palafox M, Vanni EAH, Pesola JM, Fernandez R, Chen H, Morsett LM, Abels ER, Piper M, Lane RJ, Hickman SE, ... ... Sadreyev RI, et al. Linking indirect effects of cytomegalovirus in transplantation to modulation of monocyte innate immune function. Science Advances. 6: eaax9856. PMID 32494628 DOI: 10.1126/Sciadv.Aax9856 |
0.01 |
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| 2020 |
Yildirim O, Izgu EC, Damle M, Chalei V, Ji F, Sadreyev RI, Szostak JW, Kingston RE. S-phase Enriched Non-coding RNAs Regulate Gene Expression and Cell Cycle Progression. Cell Reports. 31: 107629. PMID 32402276 DOI: 10.1016/J.Celrep.2020.107629 |
0.01 |
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| 2020 |
deFilippi C, Toribio M, Wong LP, Sadreyev R, Grundberg I, Fitch KV, Zanni MV, Lo J, Sponseller CA, Sprecher E, Rashidi N, Thompson MA, Cagliero D, Aberg JA, Braun LR, et al. Differential Plasma Protein Regulation and Statin Effects in HIV-infected and Non-HIV-infected Patients Utilizing a Proteomics Approach Protein Regulation and Statin Effects in HIV. The Journal of Infectious Diseases. PMID 32310273 DOI: 10.1093/infdis/jiaa196 |
0.01 |
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| 2020 |
Borren NZ, Plichta D, Joshi AD, Bonilla G, Peng V, Colizzo FP, Luther J, Khalili H, Garber JJ, van der Woude CJ, Sadreyev R, Vlamakis H, Xavier RJ, Ananthakrishnan AN. Alterations in Fecal Microbiomes and Serum Metabolomes of Fatigued Patients With Quiescent Inflammatory Bowel Diseases. Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. PMID 32184182 DOI: 10.1016/J.Cgh.2020.03.013 |
0.01 |
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| 2020 |
Kwak SS, Washicosky KJ, Brand E, von Maydell D, Aronson J, Kim S, Capen DE, Cetinbas M, Sadreyev R, Ning S, Bylykbashi E, Xia W, Wagner SL, Choi SH, Tanzi RE, et al. Amyloid-β42/40 ratio drives tau pathology in 3D human neural cell culture models of Alzheimer's disease. Nature Communications. 11: 1377. PMID 32170138 DOI: 10.1038/S41467-020-15120-3 |
0.01 |
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| 2020 |
Lee S, Micalizzi D, Truesdell SS, Bukhari SIA, Boukhali M, Lombardi-Story J, Kato Y, Choo MK, Dey-Guha I, Ji F, Nicholson BT, Myers DT, Lee D, Mazzola MA, Raheja R, ... ... Sadreyev R, et al. A post-transcriptional program of chemoresistance by AU-rich elements and TTP in quiescent leukemic cells. Genome Biology. 21: 33. PMID 32039742 DOI: 10.1186/S13059-020-1936-4 |
0.01 |
|
| 2020 |
Yang F, Wang W, Cetinbas M, Sadreyev R, Blower M. Genome-wide analysis identifies cis-acting elements regulating mRNA polyadenylation and translation during vertebrate oocyte maturation. Rna (New York, N.Y.). PMID 31896558 DOI: 10.1261/Rna.073247.119 |
0.01 |
|
| 2019 |
Clarke TL, Tang R, Chakraborty D, Van Rechem C, Ji F, Mishra S, Ma A, Kaniskan HU, Jin J, Lawrence MS, Sadreyev RI, Whetstine JR. Histone Lysine Methylation Dynamics Control EGFR DNA Copy Number Amplification. Cancer Discovery. PMID 31776131 DOI: 10.1158/2159-8290.Cd-19-0463 |
0.01 |
|
| 2019 |
Frodermann V, Rohde D, Courties G, Severe N, Schloss MJ, Amatullah H, McAlpine CS, Cremer S, Hoyer FF, Ji F, van Koeverden ID, Herisson F, Honold L, Masson GS, Zhang S, ... ... Sadreyev RI, et al. Exercise reduces inflammatory cell production and cardiovascular inflammation via instruction of hematopoietic progenitor cells. Nature Medicine. PMID 31700184 DOI: 10.1038/S41591-019-0633-X |
0.01 |
|
| 2019 |
Brumbaugh J, Kim IS, Ji F, Huebner AJ, Di Stefano B, Schwarz BA, Charlton J, Coffey A, Choi J, Walsh RM, Schindler JW, Anselmo A, Meissner A, Sadreyev RI, Bernstein BE, et al. Inducible histone K-to-M mutations are dynamic tools to probe the physiological role of site-specific histone methylation in vitro and in vivo. Nature Cell Biology. PMID 31659274 DOI: 10.1038/S41556-019-0403-5 |
0.01 |
|
| 2019 |
Miranda-Ribera A, Ennamorati M, Serena G, Cetinbas M, Lan J, Sadreyev RI, Jain N, Fasano A, Fiorentino M. Exploiting the Zonulin Mouse Model to Establish the Role of Primary Impaired Gut Barrier Function on Microbiota Composition and Immune Profiles. Frontiers in Immunology. 10: 2233. PMID 31608059 DOI: 10.3389/Fimmu.2019.02233 |
0.01 |
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| 2019 |
Di Stefano B, Luo EC, Haggerty C, Aigner S, Charlton J, Brumbaugh J, Ji F, Rabano Jiménez I, Clowers KJ, Huebner AJ, Clement K, Lipchina I, de Kort MAC, Anselmo A, Pulice J, ... ... Sadreyev RI, et al. The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis. Cell Stem Cell. PMID 31588046 DOI: 10.1016/J.Stem.2019.08.018 |
0.01 |
|
| 2019 |
Kong X, Liu J, Cetinbas M, Sadreyev R, Koh M, Huang H, Adeseye A, He P, Zhu J, Russell H, Hobbie C, Liu K, Onderdonk AB. New and Preliminary Evidence on Altered Oral and Gut Microbiota in Individuals with Autism Spectrum Disorder (ASD): Implications for ASD Diagnosis and Subtyping Based on Microbial Biomarkers. Nutrients. 11. PMID 31489949 DOI: 10.3390/Nu11092128 |
0.01 |
|
| 2019 |
Nishimori S, O'Meara MJ, Castro C, Noda H, Cetinbas M, da Silva Martins J, Ayturk U, Brooks DJ, Bruce M, Nagata M, Ono W, Janton CJ, Bouxsein ML, Foretz M, Berdeaux R, ... Sadreyev RI, et al. Salt-inducible kinases dictate parathyroid hormone receptor action in bone development and remodeling. The Journal of Clinical Investigation. PMID 31430259 DOI: 10.1172/Jci130126 |
0.01 |
|
| 2019 |
Etchegaray JP, Zhong L, Li C, Henriques T, Ablondi E, Nakadai T, Van Rechem C, Ferrer C, Ross KN, Choi JE, Samarakkody A, Ji F, Chang A, Sadreyev RI, Ramaswamy S, et al. The Histone Deacetylase SIRT6 Restrains Transcription Elongation via Promoter-Proximal Pausing. Molecular Cell. PMID 31399344 DOI: 10.1016/J.Molcel.2019.06.034 |
0.01 |
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| 2019 |
Griciuc A, Patel S, Federico AN, Choi SH, Innes BJ, Oram MK, Cereghetti G, McGinty D, Anselmo A, Sadreyev RI, Hickman SE, El Khoury J, Colonna M, Tanzi RE. TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer's Disease. Neuron. PMID 31301936 DOI: 10.1016/J.Neuron.2019.06.010 |
0.01 |
|
| 2019 |
Ciccone DN, Namiki Y, Chen C, Morshead KB, Wood AL, Johnston CM, Morris JW, Wang Y, Sadreyev R, Corcoran AE, Matthews AGW, Oettinger MA. The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF. The Journal of Biological Chemistry. PMID 31285261 DOI: 10.1074/Jbc.Ra118.007348 |
0.01 |
|
| 2019 |
Ji F, Sadreyev RI. Single-Cell RNA-seq: Introduction to Bioinformatics Analysis. Current Protocols in Molecular Biology. 127: e92. PMID 31237421 DOI: 10.1002/cpmb.92 |
0.01 |
|
| 2019 |
Freire R, Ingano L, Serena G, Cetinbas M, Anselmo A, Sapone A, Sadreyev RI, Fasano A, Senger S. Human gut derived-organoids provide model to study gluten response and effects of microbiota-derived molecules in celiac disease. Scientific Reports. 9: 7029. PMID 31065051 DOI: 10.1038/S41598-019-43426-W |
0.01 |
|
| 2019 |
Mao K, Ji F, Breen P, Sewell A, Han M, Sadreyev R, Ruvkun G. Mitochondrial Dysfunction in C. elegans Activates Mitochondrial Relocalization and Nuclear Hormone Receptor-Dependent Detoxification Genes. Cell Metabolism. PMID 30799287 DOI: 10.1016/J.Cmet.2019.01.022 |
0.01 |
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| 2019 |
Sherill-Rofe D, Rahat D, Findlay S, Mellul A, Guberman I, Braun M, Bloch I, Lalezari A, Samiei A, Sadreyev R, Goldberg M, Orthwein A, Zick A, Tabach Y. Mapping global and local coevolution across 600 species to identify novel homologous recombination repair genes. Genome Research. PMID 30718334 DOI: 10.1101/gr.241414.118 |
0.01 |
|
| 2019 |
Del Rosario BC, Kriz AJ, Del Rosario AM, Anselmo A, Frye CJ, White FM, Sadreyev RI, Lee JT. Exploration of CTCF post-translation modifications uncovers Serine-224 phosphorylation by PLK1 at pericentric regions during the G2/M transition. Elife. 8. PMID 30676316 DOI: 10.7554/Elife.42341 |
0.01 |
|
| 2019 |
Kfoury Y, Ji F, Mazzola M, Sykes DB, Anthony A, Akiyama Y, Scherer A, Mercier F, Severe N, Saez B, Seidl J, Papazian A, Brouse T, Mansour MK, Ivanov P, ... Sadreyev RI, et al. Niche Transfer of Small Non-Coding RNAs Regulates Hematopoietic Response to Stress Blood. 134: 1207-1207. DOI: 10.1182/Blood-2019-124794 |
0.01 |
|
| 2019 |
Miranda-Ribera A, Ennamorati MT, Serena G, Jain N, Lan J, Sadreyev RI, Cetinbas M, Fasano A, Fiorentino MR. Sa1739 – Using the Zonulin Transgenic Mouse Model to Understand the Interplay Between Gut Permeability, Immune System, and Microbiota in the Context of Gut Inflammatory Diseases Gastroenterology. 156: S-382-S-383. DOI: 10.1016/S0016-5085(19)37806-0 |
0.01 |
|
| 2019 |
Serena G, Davies C, Cetinbas M, Sadreyev RI, Fasano A. Analysis of blood and fecal microbiome profile in patients with celiac disease Human Microbiome Journal. 11: 100049. DOI: 10.1016/J.Humic.2018.12.001 |
0.01 |
|
| 2018 |
Lochhead RB, Ordoñez D, Arvikar SL, Aversa JM, Oh LS, Heyworth B, Sadreyev R, Steere AC, Strle K. Interferon-gamma production in Lyme arthritis synovial tissue promotes differentiation of fibroblast-like synoviocytes into immune effector cells. Cellular Microbiology. e12992. PMID 30550623 DOI: 10.1111/Cmi.12992 |
0.01 |
|
| 2018 |
Cetinbas M, Yu S, Sadreyev RI. Whole Genome Next-Generation Sequencing Mutation Identification in Pseudomonas aeruginosa. Current Protocols in Molecular Biology. e69. PMID 30239153 DOI: 10.1002/cpmb.69 |
0.01 |
|
| 2018 |
Ji F, Sadreyev RI. RNA-seq: Basic Bioinformatics Analysis. Current Protocols in Molecular Biology. e68. PMID 30222249 DOI: 10.1002/cpmb.68 |
0.01 |
|
| 2018 |
Lochhead RB, Arvikar SL, Aversa JM, Sadreyev RI, Strle K, Steere AC. Robust interferon signature and suppressed tissue repair gene expression in synovial tissue from patients with post-infectious, Borrelia burgdorferi-induced Lyme arthritis. Cellular Microbiology. e12954. PMID 30218476 DOI: 10.1111/Cmi.12954 |
0.01 |
|
| 2018 |
Schwarz BA, Cetinbas M, Clement K, Walsh RM, Cheloufi S, Gu H, Langkabel J, Kamiya A, Schorle H, Meissner A, Sadreyev RI, Hochedlinger K. Prospective Isolation of Poised iPSC Intermediates Reveals Principles of Cellular Reprogramming. Cell Stem Cell. PMID 30017590 DOI: 10.1016/J.Stem.2018.06.013 |
0.01 |
|
| 2018 |
Savji N, Meijers WC, Bartz TM, Bhambhani V, Cushman M, Nayor M, Kizer JR, Sarma A, Blaha MJ, Gansevoort RT, Gardin JM, Hillege HL, Ji F, Kop WJ, Lau ES, ... ... Sadreyev R, et al. The Association of Obesity and Cardiometabolic Traits With Incident HFpEF and HFrEF. Jacc. Heart Failure. PMID 30007554 DOI: 10.1016/J.Jchf.2018.05.018 |
0.01 |
|
| 2018 |
Kundu S, Ji F, Sunwoo H, Jain G, Lee JT, Sadreyev RI, Dekker J, Kingston RE. Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation. Molecular Cell. 71: 191. PMID 29979966 DOI: 10.1016/j.molcel.2018.06.022 |
0.01 |
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| 2018 |
Patra KC, Kato Y, Mizukami Y, Widholz S, Boukhali M, Revenco I, Grossman EA, Ji F, Sadreyev RI, Liss AS, Screaton RA, Sakamoto K, Ryan DP, Mino-Kenudson M, Castillo CF, et al. Mutant GNAS drives pancreatic tumourigenesis by inducing PKA-mediated SIK suppression and reprogramming lipid metabolism. Nature Cell Biology. PMID 29941929 DOI: 10.1038/S41556-018-0122-3 |
0.01 |
|
| 2018 |
Senger S, Ingano L, Freire R, Anselmo A, Zhu W, Sadreyev R, Walker WA, Fasano A. Human Fetal-Derived Enterospheres Provide Insights on Intestinal Development and a Novel Model to Study Necrotizing Enterocolitis (NEC). Cellular and Molecular Gastroenterology and Hepatology. 5: 549-568. PMID 29930978 DOI: 10.1016/J.Jcmgh.2018.01.014 |
0.01 |
|
| 2018 |
Garcia EG, Iyer S, Garcia SP, Loontiens S, Sadreyev RI, Speleman F, Langenau DM. Cell of origin dictates aggression and stem cell number in acute lymphoblastic leukemia. Leukemia. PMID 29749398 DOI: 10.1038/s41375-018-0130-0 |
0.01 |
|
| 2018 |
Bar-Nur O, Gerli MFM, Di Stefano B, Almada AE, Galvin A, Coffey A, Huebner AJ, Feige P, Verheul C, Cheung P, Payzin-Dogru D, Paisant S, Anselmo A, Sadreyev RI, Ott HC, et al. Direct Reprogramming of Mouse Fibroblasts into Functional Skeletal Muscle Progenitors. Stem Cell Reports. 10: 1505-1521. PMID 29742392 DOI: 10.1016/J.Stemcr.2018.04.009 |
0.01 |
|
| 2018 |
Newman MA, Ji F, Fischer SEJ, Anselmo A, Sadreyev RI, Ruvkun G. The surveillance of pre-mRNA splicing is an early step in RNAi of endogenous genes. Genes & Development. PMID 29739806 DOI: 10.1101/Gad.311514.118 |
0.01 |
|
| 2018 |
Ferrer CM, Alders M, Postma AV, Park S, Klein MA, Cetinbas M, Pajkrt E, Glas A, van Koningsbruggen S, Christoffels VM, Mannens MMAM, Knegt L, Etchegaray JP, Sadreyev RI, Denu JM, et al. An inactivating mutation in the histone deacetylase SIRT6 causes human perinatal lethality. Genes & Development. PMID 29555651 DOI: 10.1101/Gad.307330.117 |
0.01 |
|
| 2018 |
Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, et al. Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling. Cell. 172: 629-631. PMID 29373832 DOI: 10.1016/j.cell.2017.12.035 |
0.01 |
|
| 2018 |
Kfoury Y, Jain E, Myers JR, Ji F, Sykes DB, Mercier F, Papazian A, Le C, Randolph MA, Steensma DP, Abdel-Wahab OI, Calvi LM, Sadreyev RI, Becker MW, Scadden DT. Specific Bone Marrow Mesenchymal Subsets in Patients with Myelodysplastic Syndromes Harbor Molecular Perturbations That Alter the Dynamics of Competition between Pre-Leukemic Clones and Normal Cells Blood. 132: 938-938. DOI: 10.1182/Blood-2018-99-115242 |
0.01 |
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| 2017 |
Brumbaugh J, Di Stefano B, Wang X, Borkent M, Forouzmand E, Clowers KJ, Ji F, Schwarz BA, Kalocsay M, Elledge SJ, Chen Y, Sadreyev RI, Gygi SP, Hu G, Shi Y, et al. Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling. Cell. PMID 29249356 DOI: 10.1016/J.Cell.2017.11.023 |
0.01 |
|
| 2017 |
Ardehali MB, Anselmo A, Cochrane JC, Kundu S, Sadreyev RI, Kingston RE. Polycomb Repressive Complex 2 Methylates Elongin A to Regulate Transcription. Molecular Cell. PMID 29153392 DOI: 10.1016/J.Molcel.2017.10.025 |
0.01 |
|
| 2017 |
Del Rosario BC, Del Rosario AM, Anselmo A, Wang PI, Sadreyev RI, Lee JT. Genetic Intersection of Tsix and Hedgehog Signaling during the Initiation of X-Chromosome Inactivation. Developmental Cell. PMID 29107559 DOI: 10.1016/J.Devcel.2017.09.027 |
0.01 |
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| 2017 |
King KR, Aguirre AD, Ye YX, Sun Y, Roh JD, Ng RP, Kohler RH, Arlauckas SP, Iwamoto Y, Savol A, Sadreyev RI, Kelly M, Fitzgibbons TP, Fitzgerald KA, Mitchison T, et al. IRF3 and type I interferons fuel a fatal response to myocardial infarction. Nature Medicine. PMID 29106401 DOI: 10.1038/Nm.4428 |
0.01 |
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| 2017 |
Lobbardi R, Pinder J, Martinez-Pastor B, Theodorou M, Blackburn JS, Abraham BJ, Namiki Y, Mansour M, Abdelfattah NS, Molodtsov A, Alexe G, Toiber D, de Waard M, Jain E, Boukhali M, ... ... Sadreyev RI, et al. TOX regulates growth, DNA repair, and genomic instability in T-cell Acute Lymphoblastic Leukemia. Cancer Discovery. PMID 28974511 DOI: 10.1158/2159-8290.Cd-17-0267 |
0.01 |
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| 2017 |
Savol AJ, Wang PI, Jeon Y, Colognori D, Yildirim E, Pinter SF, Payer B, Lee JT, Sadreyev RI. Genome-wide identification of autosomal genes with allelic imbalance of chromatin state. Plos One. 12: e0182568. PMID 28796844 DOI: 10.1371/Journal.Pone.0182568 |
0.01 |
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| 2017 |
Mehta S, Cronkite DA, Basavappa M, Saunders TL, Adiliaghdam F, Amatullah H, Morrison SA, Pagan JD, Anthony RM, Tonnerre P, Lauer GM, Lee JC, Digumarthi S, Pantano L, Ho Sui SJ, ... ... Sadreyev R, et al. Maintenance of macrophage transcriptional programs and intestinal homeostasis by epigenetic reader SP140. Science Immunology. 2. PMID 28783698 DOI: 10.1126/Sciimmunol.Aag3160 |
0.01 |
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| 2017 |
Hata AN, Rowley S, Archibald HL, Gomez-Caraballo M, Siddiqui FM, Ji F, Jung J, Light M, Lee JS, Debussche L, Sidhu S, Sadreyev RI, Watters J, Engelman JA. Synergistic activity and heterogeneous acquired resistance of combined MDM2 and MEK inhibition in KRAS mutant cancers. Oncogene. PMID 28783173 DOI: 10.1038/onc.2017.258 |
0.01 |
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| 2017 |
Dai N, Ji F, Wright J, Minichiello L, Sadreyev RI, Avruch J. IGF2 mRNA binding protein-2 is a tumor promoter that drives cancer proliferation through its client mRNAs IGF2 and HMGA1. Elife. 6. PMID 28753127 DOI: 10.7554/Elife.27155 |
0.01 |
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| 2017 |
Choi J, Huebner AJ, Clement K, Walsh RM, Savol A, Lin K, Gu H, Di Stefano B, Brumbaugh J, Kim SY, Sharif J, Rose CM, Mohammad A, Odajima J, Charron J, ... ... Sadreyev RI, et al. Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells. Nature. PMID 28746311 DOI: 10.1038/Nature23274 |
0.01 |
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| 2017 |
Chu HP, Froberg JE, Kesner B, Oh HJ, Ji F, Sadreyev R, Pinter SF, Lee JT. PAR-TERRA directs homologous sex chromosome pairing. Nature Structural & Molecular Biology. PMID 28692038 DOI: 10.1038/Nsmb.3432 |
0.01 |
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| 2017 |
Walsh RM, Shen EY, Bagot RC, Anselmo A, Jiang Y, Javidfar B, Wojtkiewicz GJ, Cloutier J, Chen JW, Sadreyev R, Nestler EJ, Akbarian S, Hochedlinger K. Phf8 loss confers resistance to depression-like and anxiety-like behaviors in mice. Nature Communications. 8: 15142. PMID 28485378 DOI: 10.1038/Ncomms15142 |
0.01 |
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| 2017 |
Pym E, Sasidharan N, Thompson-Peer KL, Simon DJ, Anselmo A, Sadreyev RI, Hall Q, Nurrish S, Kaplan JM. Shank is a dose-dependent regulator of Cav1 calcium current and CREB target expression. Elife. 6. PMID 28477407 DOI: 10.7554/Elife.18931 |
0.01 |
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| 2017 |
Hulsmans M, Clauss S, Xiao L, Aguirre AD, King KR, Hanley A, Hucker WJ, Wülfers EM, Seemann G, Courties G, Iwamoto Y, Sun Y, Savol AJ, Sager HB, Lavine KJ, ... ... Sadreyev RI, et al. Macrophages Facilitate Electrical Conduction in the Heart. Cell. 169: 510-522.e20. PMID 28431249 DOI: 10.1016/J.Cell.2017.03.050 |
0.01 |
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| 2017 |
Choi J, Clement K, Huebner AJ, Webster J, Rose CM, Brumbaugh J, Walsh RM, Lee S, Savol A, Etchegaray JP, Gu H, Boyle P, Elling U, Mostoslavsky R, Sadreyev R, et al. DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells. Cell Stem Cell. PMID 28366588 DOI: 10.1016/J.Stem.2017.03.002 |
0.01 |
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| 2017 |
Mueller B, Mieczkowski J, Kundu S, Wang P, Sadreyev R, Tolstorukov MY, Kingston RE. Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction. Genes & Development. PMID 28356342 DOI: 10.1101/Gad.293118.116 |
0.01 |
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| 2017 |
Lau MS, Schwartz MG, Kundu S, Savol AJ, Wang PI, Marr SK, Grau DJ, Schorderet P, Sadreyev RI, Tabin CJ, Kingston RE. Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning. Science (New York, N.Y.). 355: 1081-1084. PMID 28280206 DOI: 10.1126/Science.Aah5403 |
0.01 |
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| 2017 |
Fusco DN, Pratt H, Kandilas S, Cheon SS, Lin W, Cronkite DA, Basavappa M, Jeffrey KL, Anselmo A, Sadreyev R, Yapp C, Shi X, O'Sullivan JF, Gerszten RE, Tomaru T, et al. HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus. Frontiers in Microbiology. 8: 240. PMID 28265266 DOI: 10.3389/fmicb.2017.00240 |
0.01 |
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| 2017 |
Wein MN, Liang Y, Goransson O, Sundberg TB, Wang J, Williams EA, O'Meara MJ, Govea N, Beqo B, Nishimori S, Nagano K, Brooks DJ, Martins JS, Corbin B, Anselmo A, ... Sadreyev R, et al. Corrigendum: SIKs control osteocyte responses to parathyroid hormone. Nature Communications. 8: 14745. PMID 28224982 DOI: 10.1038/Ncomms14745 |
0.01 |
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| 2017 |
Kundu S, Ji F, Sunwoo H, Jain G, Lee JT, Sadreyev RI, Dekker J, Kingston RE. Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation. Molecular Cell. 65: 432-446.e5. PMID 28157505 DOI: 10.1016/J.Molcel.2017.01.009 |
0.01 |
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| 2017 |
Strle K, Sulka KB, Pianta A, Crowley JT, Arvikar SL, Anselmo A, Sadreyev R, Steere AC. TH17 Cytokine Responses in Lyme Disease Correlate with Borreliaburgdorferi Antibodies During Early Infection in Patients with Erythema Migrans and with Autoantibodies Late in the Illness in Patients with Antibiotic-Refractory Lyme Arthritis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 28077518 DOI: 10.1093/Cid/Cix002 |
0.01 |
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| 2017 |
Lehrbach NJ, Ji F, Sadreyev R. Next-Generation Sequencing for Identification of EMS-Induced Mutations in Caenorhabditis elegans. Current Protocols in Molecular Biology. 117: 7.29.1-7.29.12. PMID 28060408 DOI: 10.1002/cpmb.27 |
0.01 |
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| 2016 |
Gregory KE, Samuel BS, Houghteling P, Shan G, Ausubel FM, Sadreyev RI, Walker WA. Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants. Microbiome. 4: 68. PMID 28034306 DOI: 10.1186/S40168-016-0214-X |
0.01 |
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| 2016 |
Joh RI, Khanduja JS, Calvo IA, Mistry M, Palmieri CM, Savol AJ, Ho Sui SJ, Sadreyev RI, Aryee MJ, Motamedi M. Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs. Molecular Cell. 64: 1088-1101. PMID 27984744 DOI: 10.1016/J.Molcel.2016.11.020 |
0.01 |
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| 2016 |
McEwan DL, Feinbaum RL, Stroustrup N, Haas W, Conery AL, Anselmo A, Sadreyev R, Ausubel FM. Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathway. Bmc Biology. 14: 105. PMID 27927200 DOI: 10.1186/S12915-016-0334-6 |
0.01 |
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| 2016 |
Moore JC, Tang Q, Yordán NT, Moore FE, Garcia EG, Lobbardi R, Ramakrishnan A, Marvin DL, Anselmo A, Sadreyev RI, Langenau DM. Single-cell imaging of normal and malignant cell engraftment into optically clear prkdc-null SCID zebrafish. The Journal of Experimental Medicine. PMID 27810924 DOI: 10.1084/jem.20160378 |
0.01 |
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| 2016 |
Wein MN, Liang Y, Goransson O, Sundberg TB, Wang J, Williams EA, O'Meara MJ, Govea N, Beqo B, Nishimori S, Nagano K, Brooks DJ, Martins JS, Corbin B, Anselmo A, ... Sadreyev R, et al. SIKs control osteocyte responses to parathyroid hormone. Nature Communications. 7: 13176. PMID 27759007 DOI: 10.1038/Ncomms13176 |
0.01 |
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| 2016 |
Sykes DB, Kfoury YS, Mercier FE, Wawer MJ, Law JM, Haynes MK, Lewis TA, Schajnovitz A, Jain E, Lee D, Meyer H, Pierce KA, Tolliday NJ, Waller A, Ferrara SJ, ... ... Sadreyev RI, et al. Inhibition of Dihydroorotate Dehydrogenase Overcomes Differentiation Blockade in Acute Myeloid Leukemia. Cell. PMID 27641501 DOI: 10.1016/J.Cell.2016.08.057 |
0.01 |
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| 2016 |
Moore JC, Mulligan TS, Torres Yordán N, Castranova D, Pham VN, Tang Q, Lobbardi R, Anselmo A, Liwski RS, Berman JN, Sadreyev RI, Weinstein BM, Langenau DM. T cell immune deficiency in zap70 mutant zebrafish. Molecular and Cellular Biology. PMID 27601584 DOI: 10.1128/MCB.00281-16 |
0.01 |
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| 2016 |
Sarkar A, Huebner AJ, Sulahian R, Anselmo A, Xu X, Flattery K, Desai N, Sebastian C, Yram MA, Arnold K, Rivera M, Mostoslavsky R, Bronson R, Bass AJ, Sadreyev R, et al. Sox2 Suppresses Gastric Tumorigenesis in Mice. Cell Reports. PMID 27498859 DOI: 10.1016/J.Celrep.2016.07.034 |
0.01 |
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| 2016 |
Ray MK, Wiskow O, King MJ, Ismail N, Ergun A, Wang Y, Plys AJ, Davis CP, Kathrein K, Sadreyev R, Borowsky ML, Eggan K, Zon L, Galloway JL, Kingston RE. CAT7 and cat7l long non-coding RNAs Tune Polycomb Repressive Complex 1 Function During Human and Zebrafish Development. The Journal of Biological Chemistry. PMID 27405765 DOI: 10.1074/Jbc.M116.730853 |
0.01 |
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| 2016 |
Deaton AM, Gómez-Rodríguez M, Mieczkowski J, Tolstorukov MY, Kundu S, Sadreyev RI, Jansen LE, Kingston RE. Enhancer regions show high histone H3.3 turnover that changes during differentiation. Elife. 5. PMID 27304074 DOI: 10.7554/Elife.15316 |
0.01 |
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| 2016 |
Kugel S, Sebastián C, Fitamant J, Ross KN, Saha SK, Jain E, Gladden A, Arora KS, Kato Y, Rivera MN, Ramaswamy S, Sadreyev RI, Goren A, Deshpande V, Bardeesy N, et al. SIRT6 Suppresses Pancreatic Cancer through Control of Lin28b. Cell. PMID 27180906 DOI: 10.1016/J.Cell.2016.04.033 |
0.01 |
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| 2016 |
Moore FE, Garcia EG, Lobbardi R, Jain E, Tang Q, Moore JC, Cortes M, Molodtsov A, Kasheta M, Luo CC, Garcia AJ, Mylvaganam R, Yoder JA, Blackburn JS, Sadreyev RI, et al. Single-cell transcriptional analysis of normal, aberrant, and malignant hematopoiesis in zebrafish. The Journal of Experimental Medicine. PMID 27139488 DOI: 10.1084/Jem.20152013 |
0.01 |
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| 2016 |
Bukhari SI, Truesdell SS, Lee S, Kollu S, Classon A, Boukhali M, Jain E, Mortensen RD, Yanagiya A, Sadreyev RI, Haas W, Vasudevan S. A Specialized Mechanism of Translation Mediated by FXR1a-Associated MicroRNP in Cellular Quiescence. Molecular Cell. 61: 760-773. PMID 26942679 DOI: 10.1016/J.Molcel.2016.02.013 |
0.01 |
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| 2016 |
Nishikawa JL, Boeszoermenyi A, Vale-Silva LA, Torelli R, Posteraro B, Sohn YJ, Ji F, Gelev V, Sanglard D, Sanguinetti M, Sadreyev RI, Mukherjee G, Bhyravabhotla J, Buhrlage SJ, Gray NS, et al. Inhibiting fungal multidrug resistance by disrupting an activator-Mediator interaction. Nature. PMID 26886795 DOI: 10.1038/Nature16963 |
0.01 |
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| 2016 |
Hata AN, Niederst MJ, Archibald HL, Gomez-Caraballo M, Siddiqui FM, Mulvey HE, Maruvka YE, Ji F, Bhang HC, Krishnamurthy Radhakrishna V, Siravegna G, Hu H, Raoof S, Lockerman E, Kalsy A, ... ... Sadreyev RI, et al. Tumor cells can follow distinct evolutionary paths to become resistant to epidermal growth factor receptor inhibition. Nature Medicine. PMID 26828195 DOI: 10.1038/Nm.4040 |
0.01 |
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| 2016 |
Wani AH, Boettiger AN, Schorderet P, Ergun A, Münger C, Sadreyev RI, Zhuang X, Kingston RE, Francis NJ. Chromatin topology is coupled to Polycomb group protein subnuclear organization. Nature Communications. 7: 10291. PMID 26759081 DOI: 10.1038/Ncomms10291 |
0.01 |
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| 2015 |
Varmeh S, Borre PV, Gunda V, Brauner E, Holm T, Wang Y, Sadreyev RI, Parangi S. Genome-wide analysis of differentially expressed miRNA in PLX4720-resistant and parental human thyroid cancer cell lines. Surgery. PMID 26456124 DOI: 10.1016/J.Surg.2015.06.046 |
0.01 |
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| 2015 |
Tong J, Sadreyev RI, Pei J, Kinch LN, Grishin NV. Using homology relations within a database markedly boosts protein sequence similarity search. Proceedings of the National Academy of Sciences of the United States of America. 112: 7003-8. PMID 26038555 DOI: 10.1073/Pnas.1424324112 |
0.01 |
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| 2015 |
Pinter SF, Colognori D, Beliveau BJ, Sadreyev RI, Payer B, Yildirim E, Wu CT, Lee JT. Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome. Genetics. 200: 537-49. PMID 25858912 DOI: 10.1534/Genetics.115.176263 |
0.01 |
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| 2015 |
Sarma K, Cifuentes-Rojas C, Ergun A, Del Rosario A, Jeon Y, White F, Sadreyev R, Lee JT. ATRX directs binding of PRC2 to Xist RNA and polycomb targets Cell. 160: 568-569. DOI: 10.1016/j.cell.2015.01.030 |
0.01 |
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| 2014 |
Sarma K, Cifuentes-Rojas C, Ergun A, Del Rosario A, Jeon Y, White F, Sadreyev R, Lee JT. ATRX Directs Binding of PRC2 to Xist RNA and Polycomb Targets. Cell. 159: 1228. PMID 28898627 DOI: 10.1016/j.cell.2014.11.010 |
0.01 |
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| 2014 |
Sarma K, Cifuentes-Rojas C, Ergun A, Del Rosario A, Jeon Y, White F, Sadreyev R, Lee JT. ATRX directs binding of PRC2 to Xist RNA and Polycomb targets. Cell. 159: 869-83. PMID 25417162 DOI: 10.1016/J.Cell.2014.10.019 |
0.01 |
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| 2014 |
West JA, Davis CP, Sunwoo H, Simon MD, Sadreyev RI, Wang PI, Tolstorukov MY, Kingston RE. The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites. Molecular Cell. 55: 791-802. PMID 25155612 DOI: 10.1016/J.Molcel.2014.07.012 |
0.01 |
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| 2014 |
Bowman SK, Deaton AM, Domingues H, Wang PI, Sadreyev RI, Kingston RE, Bender W. H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex. Elife. 3: e02833. PMID 25082344 DOI: 10.7554/Elife.02833 |
0.01 |
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| 2014 |
Broering TJ, Alavattam KG, Sadreyev RI, Ichijima Y, Kato Y, Hasegawa K, Camerini-Otero RD, Lee JT, Andreassen PR, Namekawa SH. BRCA1 establishes DNA damage signaling and pericentric heterochromatin of the X chromosome in male meiosis. The Journal of Cell Biology. 205: 663-75. PMID 24914237 DOI: 10.1083/Jcb.201311050 |
0.01 |
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| 2014 |
Sadreyev RI. Informatics for molecular biologists. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 106: 19.0.1-2. PMID 24733239 DOI: 10.1002/0471142727.mb1900s106 |
0.01 |
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| 2013 |
Sadreyev RI, Yildirim E, Pinter SF, Lee JT. Bimodal quantitative relationships between histone modifications for X-linked and autosomal loci. Proceedings of the National Academy of Sciences of the United States of America. 110: 6949-54. PMID 23564346 DOI: 10.1073/Pnas.1216449110 |
0.01 |
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| 2013 |
Yildirim E, Kirby JE, Brown DE, Mercier FE, Sadreyev RI, Scadden DT, Lee JT. Xist RNA is a potent suppressor of hematologic cancer in mice. Cell. 152: 727-42. PMID 23415223 DOI: 10.1016/J.Cell.2013.01.034 |
0.01 |
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| 2013 |
Ray MK, Wang Y, Borowsky M, Sadreyev R, Kingston RE. Identifying candidate ncRNAs that direct changes in chromatin structure Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-P69 |
0.01 |
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| 2012 |
Pinter SF, Sadreyev RI, Yildirim E, Jeon Y, Ohsumi TK, Borowsky M, Lee JT. Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations. Genome Research. 22: 1864-76. PMID 22948768 DOI: 10.1101/Gr.133751.111 |
0.01 |
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| 2012 |
Anguera MC, Sadreyev R, Zhang Z, Szanto A, Payer B, Sheridan SD, Kwok S, Haggarty SJ, Sur M, Alvarez J, Gimelbrant A, Mitalipova M, Kirby JE, Lee JT. Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes. Cell Stem Cell. 11: 75-90. PMID 22770242 DOI: 10.1016/J.Stem.2012.03.008 |
0.01 |
|
| 2012 |
Yildirim E, Sadreyev RI, Pinter SF, Lee JT. X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription. Nature Structural & Molecular Biology. 19: 56-61. PMID 22139016 DOI: 10.1038/Nsmb.2195 |
0.01 |
|
| 2012 |
Pinter SF, Pinter SF, Pinter SF, Jeon Y, Jeon Y, Jeon Y, Ohsumi TK, Ohsumi TK, Borowsky M, Borowsky M, Lee JT, Lee JT, Lee JT, Sadreyev RI, Sadreyev RI, ... Sadreyev RI, et al. Abstract IA10: Spreading of X-chromosome inactivation via a hierarchy of defined Polycomb stations Cancer Research. 72: IA10-IA10. DOI: 10.1158/1538-7445.Nonrna12-Ia10 |
0.01 |
|
| 2011 |
Spencer RJ, del Rosario BC, Pinter SF, Lessing D, Sadreyev RI, Lee JT. A boundary element between Tsix and Xist binds the chromatin insulator Ctcf and contributes to initiation of X-chromosome inactivation. Genetics. 189: 441-54. PMID 21840866 DOI: 10.1534/Genetics.111.132662 |
0.01 |
|
| 2010 |
Sun S, Fukue Y, Nolen L, Sadreyev R, Lee JT. Characterization of Xpr (Xpct) reveals instability but no effects on X-chromosome pairing or Xist expression. Transcription. 1: 46-56. PMID 21327163 DOI: 10.4161/trns.1.1.12401 |
0.01 |
|
| 2009 |
Shi S, Pei J, Sadreyev RI, Kinch LN, Majumdar I, Tong J, Cheng H, Kim BH, Grishin NV. Analysis of CASP8 targets, predictions and assessment methods. Database : the Journal of Biological Databases and Curation. 2009: bap003. PMID 20157476 DOI: 10.1093/Database/Bap003 |
0.01 |
|
| 2009 |
Sadreyev RI, Wang Y, Grishin NV. Considering scores between unrelated proteins in the search database improves profile comparison. Bmc Bioinformatics. 10: 399. PMID 19961610 DOI: 10.1186/1471-2105-10-399 |
0.01 |
|
| 2009 |
Sadreyev RI, Feramisco JD, Tsao H, Grishin NV. Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways. Bioinformatics (Oxford, England). 25: 2891-6. PMID 19744994 DOI: 10.1093/Bioinformatics/Btp538 |
0.01 |
|
| 2009 |
Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, et al. Structure prediction for CASP8 with all-atom refinement using Rosetta. Proteins. 77: 89-99. PMID 19701941 DOI: 10.1002/Prot.22540 |
0.01 |
|
| 2009 |
Feramisco JD, Sadreyev RI, Murray ML, Grishin NV, Tsao H. Phenotypic and genotypic analyses of genetic skin disease through the Online Mendelian Inheritance in Man (OMIM) database. The Journal of Investigative Dermatology. 129: 2628-36. PMID 19536140 DOI: 10.1038/Jid.2009.108 |
0.01 |
|
| 2009 |
Wang Y, Sadreyev RI, Grishin NV. PROCAIN server for remote protein sequence similarity search. Bioinformatics (Oxford, England). 25: 2076-7. PMID 19497935 DOI: 10.1093/Bioinformatics/Btp346 |
0.01 |
|
| 2009 |
Sadreyev RI, Kim BH, Grishin NV. Discrete-continuous duality of protein structure space. Current Opinion in Structural Biology. 19: 321-8. PMID 19482467 DOI: 10.1016/J.Sbi.2009.04.009 |
0.01 |
|
| 2009 |
Sadreyev RI, Tang M, Kim BH, Grishin NV. COMPASS server for homology detection: improved statistical accuracy, speed and functionality. Nucleic Acids Research. 37: W90-4. PMID 19435884 DOI: 10.1093/Nar/Gkp360 |
0.01 |
|
| 2009 |
Wang Y, Sadreyev RI, Grishin NV. PROCAIN: protein profile comparison with assisting information. Nucleic Acids Research. 37: 3522-30. PMID 19357092 DOI: 10.1093/Nar/Gkp212 |
0.01 |
|
| 2009 |
Sadreyev RI, Shi S, Baker D, Grishin NV. Structure similarity measure with penalty for close non-equivalent residues. Bioinformatics (Oxford, England). 25: 1259-63. PMID 19321733 DOI: 10.1093/Bioinformatics/Btp148 |
0.01 |
|
| 2008 |
Sadreyev RI, Grishin NV. Accurate statistical model of comparison between multiple sequence alignments. Nucleic Acids Research. 36: 2240-8. PMID 18285364 DOI: 10.1093/Nar/Gkn065 |
0.01 |
|
| 2007 |
Qi Y, Sadreyev RI, Wang Y, Kim BH, Grishin NV. A comprehensive system for evaluation of remote sequence similarity detection. Bmc Bioinformatics. 8: 314. PMID 17725841 DOI: 10.1186/1471-2105-8-314 |
0.01 |
|
| 2007 |
Sadreyev RI, Tang M, Kim BH, Grishin NV. COMPASS server for remote homology inference. Nucleic Acids Research. 35: W653-8. PMID 17517780 DOI: 10.1093/Nar/Gkm293 |
0.01 |
|
| 2006 |
Krishna SS, Sadreyev RI, Grishin NV. A tale of two ferredoxins: sequence similarity and structural differences. Bmc Structural Biology. 6: 8. PMID 16603087 DOI: 10.1186/1472-6807-6-8 |
0.01 |
|
| 2006 |
Sadreyev RI, Grishin NV. Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds. Bmc Structural Biology. 6: 6. PMID 16549009 DOI: 10.1186/1472-6807-6-6 |
0.01 |
|
| 2005 |
Kim BH, Sadreyev R, Grishin NV. COG4849 is a novel family of nucleotidyltransferases Journal of Molecular Recognition. 18: 422-425. PMID 15983981 DOI: 10.1002/Jmr.746 |
0.01 |
|
| 2004 |
Sadreyev RI, Grishin NV. Estimates of statistical significance for comparison of individual positions in multiple sequence alignments. Bmc Bioinformatics. 5: 106. PMID 15296518 DOI: 10.1186/1471-2105-5-106 |
0.01 |
|
| 2004 |
Sadreyev RI, Grishin NV. Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs. Bioinformatics (Oxford, England). 20: 818-28. PMID 14751996 DOI: 10.1093/Bioinformatics/Btg485 |
0.01 |
|
| 2003 |
Kinch LN, Wrabl JO, Krishna SS, Majumdar I, Sadreyev RI, Qi Y, Pei J, Cheng H, Grishin NV. CASP5 assessment of fold recognition target predictions. Proteins. 53: 395-409. PMID 14579328 DOI: 10.1002/Prot.10557 |
0.01 |
|
| 2003 |
Sadreyev RI, Baker D, Grishin NV. Profile-profile comparisons by COMPASS predict intricate homologies between protein families. Protein Science : a Publication of the Protein Society. 12: 2262-72. PMID 14500884 DOI: 10.1110/Ps.03197403 |
0.01 |
|
| 2003 |
Mittelman D, Sadreyev R, Grishin N. Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments Bioinformatics. 19: 1531-1539. PMID 12912834 DOI: 10.1093/Bioinformatics/Btg185 |
0.01 |
|
| 2003 |
Pei J, Sadreyev R, Grishin NV. PCMA: Fast and accurate multiple sequence alignment based on profile consistency Bioinformatics. 19: 427-428. PMID 12584134 DOI: 10.1093/Bioinformatics/Btg008 |
0.01 |
|
| 2003 |
Sadreyev R, Grishin N. COMPASS: A tool for comparison of multiple protein alignments with assessment of statistical significance Journal of Molecular Biology. 326: 317-336. PMID 12547212 DOI: 10.1016/S0022-2836(02)01371-2 |
0.01 |
|
| 2002 |
Sadreyev RI, Panchin YV. Effects of glutamate agonists on the isolated neurons from the locomotor network of the mollusc Clione limacina. Neuroreport. 13: 2235-9. PMID 12488803 DOI: 10.1097/01.wnr.000044214.09266.f6 |
0.01 |
|
| 2000 |
Sadreyev RI, Panchin YV. The role of putative glutamatergic neurons and their connections in the locomotor central pattern generator of the mollusk, Clione limacina. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 126: 193-202. PMID 10936759 DOI: 10.1016/S1095-6433(00)00186-0 |
0.01 |
|
| 1998 |
Arshavsky YI, Deliagina TG, Orlovsky GN, Panchin YV, Popova LB, Sadreyev RI. Analysis of the central pattern generator for swimming in the mollusk Clione. Annals of the New York Academy of Sciences. 860: 51-69. PMID 9928301 DOI: 10.1111/j.1749-6632.1998.tb09038.x |
0.01 |
|
| 1997 |
Panchin YV, Sadreyev RI. Effects of acetylcholine and glutamate on isolated neurons of locomotory network of Clione. Neuroreport. 8: 2897-901. PMID 9376527 |
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