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Hamid R. Chitsaz, Ph.D. - Publications

Affiliations: 
2008 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Computer Science, Robotics Engineering
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Movahedi NS, Embree M, Nagarajan H, Zengler K, Chitsaz H. Efficient Synergistic Single-Cell Genome Assembly. Frontiers in Bioengineering and Biotechnology. 4: 42. PMID 27243002 DOI: 10.3389/Fbioe.2016.00042  0.372
2014 Gholami M, Arbabi A, Sharifi-Zarchi A, Chitsaz H, Sadeghi M. ARYANA: Aligning Reads by Yet Another Approach Bmc Bioinformatics. 15: 1-10. PMID 25252881 DOI: 10.1186/1471-2105-15-S9-S12  0.33
2014 Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K. Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. The Isme Journal. 8: 757-67. PMID 24152715 DOI: 10.1038/Ismej.2013.187  0.328
2013 Taghavi Z, Movahedi NS, Draghici S, Chitsaz H. Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities. Bioinformatics (Oxford, England). 29: 2395-401. PMID 23918251 DOI: 10.1093/Bioinformatics/Btt420  0.363
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.332
2013 Forouzmand E, Chitsaz H. The RNA Newton polytope and learnability of energy parameters Bioinformatics. 29: 300-307. PMID 23812998 DOI: 10.1093/Bioinformatics/Btt226  0.304
2013 McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, et al. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. Proceedings of the National Academy of Sciences of the United States of America. 110: E2390-9. PMID 23754396 DOI: 10.1073/Pnas.1219809110  0.345
2013 Taghavi Z, Movahedi NS, Draghici S, Chitsaz H. Reduced cost single cell genome sequencing and de novo assembly of microbial communities F1000research. 4. DOI: 10.7490/F1000Research.1093951.1  0.351
2012 Ronen R, Boucher C, Chitsaz H, Pevzner P. sEQuel: Improving the accuracy of genome assemblies Bioinformatics. 28: i188-i196. PMID 22689760 DOI: 10.1093/Bioinformatics/Bts219  0.307
2011 Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nature Biotechnology. 29: 915-21. PMID 21926975 DOI: 10.1038/Nbt.1966  0.355
2006 Chitsaz H, LaValle SM, Balkcom DJ, Mason MT. Minimum wheel-rotation paths for differential-drive mobile robots Proceedings - Ieee International Conference On Robotics and Automation. 2006: 1616-1623. DOI: 10.1177/0278364908096750  0.469
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