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Shawna L. Thomas, Ph.D. - Publications

Affiliations: 
2010 Texas A & M University, College Station, TX, United States 
Area:
Computer Science, Bioinformatics Biology, Biochemistry, General Biophysics
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Amato NM, Hager G, Thomas SL, Torres-Torriti M. Special issue on the International Symposium on Robotics Research, 2017 The International Journal of Robotics Research. 38: 1327-1328. DOI: 10.1177/0278364919877027  0.516
2018 McMahon T, Thomas S, Amato NM. Sampling-based motion planning with reachable volumes for high-degree-of-freedom manipulators The International Journal of Robotics Research. 37: 779-817. DOI: 10.1177/0278364918779555  0.586
2018 Amato NM, Brock O, Morales M, Thomas S. Special issue on “Robotics: Science and Systems”, 2016 Autonomous Robots. 42: 1299-1300. DOI: 10.1007/S10514-018-9775-9  0.492
2016 Ekenna C, Thomas S, Amato NM. Adaptive local learning in sampling based motion planning for protein folding. Bmc Systems Biology. 10: 49. PMID 27490494 DOI: 10.1186/S12918-016-0297-9  0.62
2015 Yeh HY, Lindsey A, Wu CP, Thomas S, Amato NM. Decoy Database Improvement for Protein Folding. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 823-36. PMID 26258648 DOI: 10.1089/Cmb.2015.0116  0.576
2010 Amato NM, Tapia L, Thomas S. A Motion Planning Approach to Studying Molecular Motions Communications in Information and Systems. 10: 53-68. DOI: 10.4310/Cis.2010.V10.N1.A4  0.73
2010 Tang X, Thomas S, Coleman P, Amato NM. Reachable distance space: Efficient sampling-based planning for spatially constrained systems International Journal of Robotics Research. 29: 916-934. DOI: 10.1177/0278364909357643  0.629
2009 Tang X, Thomas S, Tapia L, Giedroc DP, Amato NM. Erratum to “Simulating RNA Folding Kinetics on Approximated Energy Landscapes” [J. Mol. Biol. 381 (2008) 1055–1067] Journal of Molecular Biology. 387: 522. DOI: 10.1016/J.Jmb.2008.08.064  0.674
2008 Tang X, Thomas S, Tapia L, Giedroc DP, Amato NM. Simulating RNA folding kinetics on approximated energy landscapes. Journal of Molecular Biology. 381: 1055-67. PMID 18639245 DOI: 10.1016/J.Jmb.2008.02.007  0.713
2007 Thomas S, Tang X, Tapia L, Amato NM. Simulating protein motions with rigidity analysis. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 839-55. PMID 17691897 DOI: 10.1089/Cmb.2007.R019  0.735
2007 Tapia L, Tang X, Thomas S, Amato NM. Kinetics analysis methods for approximate folding landscapes. Bioinformatics (Oxford, England). 23: i539-48. PMID 17646341 DOI: 10.1093/bioinformatics/btm199  0.73
2005 Thomas S, Song G, Amato NM. Protein folding by motion planning. Physical Biology. 2: S148-55. PMID 16280620 DOI: 10.1088/1478-3975/2/4/S09  0.725
2005 Tang X, Kirkpatrick B, Thomas S, Song G, Amato NM. Using motion planning to study RNA folding kinetics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 862-81. PMID 16108722 DOI: 10.1089/Cmb.2005.12.862  0.727
2004 Thomas S, Amato NM. Parallel protein folding with STAPL Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 2639-2646. DOI: 10.1002/Cpe.950  0.649
2003 Song G, Thomas S, Dill KA, Scholtz JM, Amato NM. A path planning-based study of protein folding with a case study of hairpin formation in protein G and L. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 240-51. PMID 12603032  0.703
2003 Lien JM, Thomas SL, Amato NM. A general framework for sampling on the medial axis of the free space Proceedings - Ieee International Conference On Robotics and Automation. 3: 4439-4444.  0.524
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