Blaine Bartholomew - Publications

Affiliations: 
Molecular Biology Microbiology and Biochemistry Southern Illinois University at Carbondale, Carbondale, IL 
Area:
Molecular Biology, Microbiology Biology

76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bartholomew B, Shukla S, Ngubo M, Paul S, Persinger J, Brahma S. New insights into the mechanism and DNA-sequence specificity of INO80 chromatin remodeling. Research Square. PMID 37961512 DOI: 10.21203/rs.3.rs-3443329/v1  0.895
2023 Saha D, Hailu S, Hada A, Lee J, Luo J, Ranish JA, Lin YC, Feola K, Persinger J, Jain A, Liu B, Lu Y, Sen P, Bartholomew B. The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming. Nature Communications. 14: 4682. PMID 37542049 DOI: 10.1038/s41467-023-40386-8  0.715
2020 Bhardwaj SK, Hailu SG, Olufemi L, Brahma S, Kundu S, Hota SK, Persinger J, Bartholomew B. Dinucleosome specificity and allosteric switch of the ISW1a ATP-dependent chromatin remodeler in transcription regulation. Nature Communications. 11: 5913. PMID 33219211 DOI: 10.1038/s41467-020-19700-1  0.845
2020 Bartholomew B. Decision letter: Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes Elife. DOI: 10.7554/Elife.58130.Sa1  0.463
2019 He W, Zhang L, Villarreal OD, Fu R, Bedford E, Dou J, Patel AY, Bedford MT, Shi X, Chen T, Bartholomew B, Xu H. De novo identification of essential protein domains from CRISPR-Cas9 tiling-sgRNA knockout screens. Nature Communications. 10: 4541. PMID 31586052 DOI: 10.1038/S41467-019-12489-8  0.308
2019 Hada A, Hota SK, Luo J, Lin YC, Kale S, Shaytan AK, Bhardwaj SK, Persinger J, Ranish J, Panchenko AR, Bartholomew B. Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling. Cell Reports. 28: 282-294.e6. PMID 31269447 DOI: 10.1016/J.Celrep.2019.05.106  0.713
2018 Paul S, Bartholomew B. Regulation of ATP-dependent chromatin remodelers: accelerators/brakes, anchors and sensors. Biochemical Society Transactions. PMID 30467122 DOI: 10.1042/Bst20180043  0.737
2018 Brahma S, Ngubo M, Paul S, Udugama M, Bartholomew B. The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling. Nature Communications. 9: 3309. PMID 30120252 DOI: 10.1038/S41467-018-05710-7  0.877
2017 Meng H, Bartholomew B. Emerging Roles of Transcriptional Enhancers In Chromatin Looping And Promoter-Proximal Pausing Of RNA Polymerase II. The Journal of Biological Chemistry. PMID 29187597 DOI: 10.1074/Jbc.R117.813485  0.444
2017 Bartholomew B. Proteasomes beyond proteolysis: Roles in heterochromatin maintenance. The Journal of Biological Chemistry. 292: 17156-17157. PMID 29030538 DOI: 10.1074/Jbc.H117.790824  0.441
2017 Brahma S, Udugama MI, Kim J, Hada A, Bhardwaj SK, Hailu SG, Lee TH, Bartholomew B. INO80 exchanges H2A.Z for H2A by translocating on DNA proximal to histone dimers. Nature Communications. 8: 15616. PMID 28604691 DOI: 10.1038/Ncomms15616  0.871
2017 Sen P, Luo J, Hada A, Hailu SG, Dechassa ML, Persinger J, Brahma S, Paul S, Ranish J, Bartholomew B. Loss of Snf5 Induces Formation of an Aberrant SWI/SNF Complex. Cell Reports. 18: 2135-2147. PMID 28249160 DOI: 10.1016/J.Celrep.2017.02.017  0.85
2016 Prasad R, D'Arcy S, Hada A, Luger K, Bartholomew B. Coordinated action of Nap1 and RSC in disassembly of tandem nucleosomes. Molecular and Cellular Biology. PMID 27273866 DOI: 10.1128/Mcb.00195-16  0.661
2016 Harada BT, Hwang WL, Deindl S, Chatterjee N, Bartholomew B, Zhuang X. Stepwise nucleosome translocation by RSC remodeling complexes. Elife. 5. PMID 26895087 DOI: 10.7554/Elife.10051  0.737
2016 Bartholomew B, Persinger J, Sen P, Lemma MD, Luo J, Ranish J. Abstract 1972: Changes in the architecture, interactions and chromatin remodeling of SWI/SNF due to loss of Snf5 Cancer Research. 76: 1972-1972. DOI: 10.1158/1538-7445.Am2016-1972  0.678
2015 Lafon A, Taranum S, Pietrocola F, Dingli F, Loew D, Brahma S, Bartholomew B, Papamichos-Chronakis M. INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation. Molecular Cell. 60: 784-96. PMID 26656161 DOI: 10.1016/J.Molcel.2015.10.028  0.825
2015 Chatterjee N, North JA, Dechassa ML, Manohar M, Prasad R, Luger K, Ottesen JJ, Poirier MG, Bartholomew B. Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Molecular and Cellular Biology. 35: 4083-92. PMID 26416878 DOI: 10.1128/Mcb.00441-15  0.586
2015 Li M, Hada A, Sen P, Olufemi L, Hall MA, Smith BY, Forth S, McKnight JN, Patel A, Bowman GD, Bartholomew B, Wang MD. Dynamic regulation of transcription factors by nucleosome remodeling. Elife. 4. PMID 26047462 DOI: 10.7554/Elife.06249  0.868
2015 Kim SA, Chatterjee N, Jennings MJ, Bartholomew B, Tan S. Extranucleosomal DNA enhances the activity of the LSD1/CoREST histone demethylase complex. Nucleic Acids Research. 43: 4868-80. PMID 25916846 DOI: 10.1093/Nar/Gkv388  0.742
2015 Kapoor P, Bao Y, Xiao J, Luo J, Shen J, Persinger J, Peng G, Ranish J, Bartholomew B, Shen X. Regulation of Mec1 kinase activity by the SWI/SNF chromatin remodeling complex. Genes & Development. 29: 591-602. PMID 25792597 DOI: 10.1101/Gad.257626.114  0.563
2015 Harada BT, Hwang WL, Deindl S, Chatterjee N, Bartholomew B, Zhuang X. Author response: Stepwise nucleosome translocation by RSC remodeling complexes Elife. DOI: 10.7554/Elife.10051.024  0.416
2015 Li M, Hada A, Sen P, Olufemi L, Hall MA, Smith BY, Forth S, McKnight JN, Patel A, Bowman GD, Bartholomew B, Wang MD. Author response: Dynamic regulation of transcription factors by nucleosome remodeling Elife. DOI: 10.7554/Elife.06249.022  0.785
2014 Creamer KM, Job G, Shanker S, Neale GA, Lin YC, Bartholomew B, Partridge JF. The Mi-2 homolog Mit1 actively positions nucleosomes within heterochromatin to suppress transcription. Molecular and Cellular Biology. 34: 2046-61. PMID 24662054 DOI: 10.1128/Mcb.01609-13  0.636
2014 Bartholomew B. Regulating the chromatin landscape: structural and mechanistic perspectives. Annual Review of Biochemistry. 83: 671-96. PMID 24606138 DOI: 10.1146/annurev-biochem-051810-093157  0.471
2014 Bartholomew B. ISWI chromatin remodeling: one primary actor or a coordinated effort? Current Opinion in Structural Biology. 24: 150-5. PMID 24561830 DOI: 10.1016/j.sbi.2014.01.010  0.558
2013 Bartholomew B. Monomeric actin required for INO80 remodeling. Nature Structural & Molecular Biology. 20: 405-7. PMID 23552289 DOI: 10.1038/Nsmb.2553  0.474
2013 Deindl S, Hwang WL, Hota SK, Blosser TR, Prasad P, Bartholomew B, Zhuang X. ISWI remodelers slide nucleosomes with coordinated multi-base-pair entry steps and single-base-pair exit steps. Cell. 152: 442-52. PMID 23374341 DOI: 10.1016/J.Cell.2012.12.040  0.789
2013 Hota SK, Bhardwaj SK, Deindl S, Lin YC, Zhuang X, Bartholomew B. Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains. Nature Structural & Molecular Biology. 20: 222-9. PMID 23334290 DOI: 10.1038/Nsmb.2486  0.682
2013 Sen P, Vivas P, Dechassa ML, Mooney AM, Poirier MG, Bartholomew B. The SnAC domain of SWI/SNF is a histone anchor required for remodeling. Molecular and Cellular Biology. 33: 360-70. PMID 23149935 DOI: 10.1128/Mcb.00922-12  0.776
2012 Dechassa ML, Hota SK, Sen P, Chatterjee N, Prasad P, Bartholomew B. Disparity in the DNA translocase domains of SWI/SNF and ISW2. Nucleic Acids Research. 40: 4412-21. PMID 22298509 DOI: 10.1093/Nar/Gks007  0.866
2012 Darst RP, Pardo CE, Pondugula S, Gangaraju VK, Nabilsi NH, Bartholomew B, Kladde MP. Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit. Methods in Molecular Biology (Clifton, N.J.). 833: 125-41. PMID 22183592 DOI: 10.1007/978-1-61779-477-3_9  0.813
2012 Hota SK, Dechassa ML, Prasad P, Bartholomew B. Mapping protein-DNA and protein-protein interactions of ATP-dependent chromatin remodelers. Methods in Molecular Biology (Clifton, N.J.). 809: 381-409. PMID 22113290 DOI: 10.1007/978-1-61779-376-9_26  0.798
2012 Hota SK, Bartholomew B. Approaches for studying nucleosome movement by ATP-dependent chromatin remodeling complexes. Methods in Molecular Biology (Clifton, N.J.). 809: 367-80. PMID 22113289 DOI: 10.1007/978-1-61779-376-9_25  0.744
2011 Sen P, Ghosh S, Pugh BF, Bartholomew B. A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling. Nucleic Acids Research. 39: 9155-66. PMID 21835776 DOI: 10.1093/Nar/Gkr622  0.661
2011 Chatterjee N, Sinha D, Lemma-Dechassa M, Tan S, Shogren-Knaak MA, Bartholomew B. Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms. Nucleic Acids Research. 39: 8378-91. PMID 21749977 DOI: 10.1093/Nar/Gkr535  0.544
2011 Hota SK, Bartholomew B. Diversity of operation in ATP-dependent chromatin remodelers. Biochimica Et Biophysica Acta. 1809: 476-87. PMID 21616185 DOI: 10.1016/J.Bbagrm.2011.05.007  0.612
2011 North JA, Javaid S, Ferdinand MB, Chatterjee N, Picking JW, Shoffner M, Nakkula RJ, Bartholomew B, Ottesen JJ, Fishel R, Poirier MG. Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling. Nucleic Acids Research. 39: 6465-74. PMID 21576235 DOI: 10.1093/Nar/Gkr304  0.668
2011 Gaykalova DA, Nagarajavel V, Bondarenko VA, Bartholomew B, Clark DJ, Studitsky VM. A polar barrier to transcription can be circumvented by remodeler-induced nucleosome translocation. Nucleic Acids Research. 39: 3520-8. PMID 21245049 DOI: 10.1093/Nar/Gkq1273  0.495
2011 Udugama M, Sabri A, Bartholomew B. The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor. Molecular and Cellular Biology. 31: 662-73. PMID 21135121 DOI: 10.1128/Mcb.01035-10  0.892
2010 Dechassa ML, Sabri A, Pondugula S, Kassabov SR, Chatterjee N, Kladde MP, Bartholomew B. SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes. Molecular Cell. 38: 590-602. PMID 20513433 DOI: 10.1016/J.Molcel.2010.02.040  0.869
2010 Prasad P, Bartholomew B. Control of nucleosome movement: to space or not to space nucleosomes? Epigenetics. 5: 282-6. PMID 20421732 DOI: 10.4161/Epi.5.4.11607  0.813
2010 Chatterjee N, Sen P, Bartholomew B. The SWI/SNF and RSC nucleosome remodeling complexes Handbook of Cell Signaling, 2/E. 3: 2345-2356. DOI: 10.1016/B978-0-12-374145-5.00282-5  0.626
2009 Gangaraju VK, Prasad P, Srour A, Kagalwala MN, Bartholomew B. Conformational changes associated with template commitment in ATP-dependent chromatin remodeling by ISW2. Molecular Cell. 35: 58-69. PMID 19595716 DOI: 10.1016/J.Molcel.2009.05.013  0.855
2009 Ransom M, Williams SK, Dechassa ML, Das C, Linger J, Adkins M, Liu C, Bartholomew B, Tyler JK. FACT and the proteasome promote promoter chromatin disassembly and transcriptional initiation. The Journal of Biological Chemistry. 284: 23461-71. PMID 19574230 DOI: 10.1074/Jbc.M109.019562  0.65
2009 Persinger J, Bartholomew B. Site-directed DNA crosslinking of large multisubunit protein-DNA complexes. Methods in Molecular Biology (Clifton, N.J.). 543: 453-74. PMID 19378181 DOI: 10.1007/978-1-60327-015-1_27  0.659
2008 Dechassa ML, Zhang B, Horowitz-Scherer R, Persinger J, Woodcock CL, Peterson CL, Bartholomew B. Architecture of the SWI/SNF-nucleosome complex. Molecular and Cellular Biology. 28: 6010-21. PMID 18644858 DOI: 10.1128/Mcb.00693-08  0.778
2007 Dang W, Bartholomew B. Domain architecture of the catalytic subunit in the ISW2-nucleosome complex. Molecular and Cellular Biology. 27: 8306-17. PMID 17908792 DOI: 10.1128/Mcb.01351-07  0.79
2007 Dang W, Kagalwala MN, Bartholomew B. The Dpb4 subunit of ISW2 is anchored to extranucleosomal DNA. The Journal of Biological Chemistry. 282: 19418-25. PMID 17491017 DOI: 10.1074/Jbc.M700640200  0.872
2007 Gangaraju VK, Bartholomew B. Mechanisms of ATP dependent chromatin remodeling. Mutation Research. 618: 3-17. PMID 17306844 DOI: 10.1016/J.Mrfmmm.2006.08.015  0.879
2007 Gangaraju VK, Bartholomew B. Dependency of ISW1a chromatin remodeling on extranucleosomal DNA. Molecular and Cellular Biology. 27: 3217-25. PMID 17283061 DOI: 10.1128/Mcb.01731-06  0.887
2006 Dang W, Kagalwala MN, Bartholomew B. Regulation of ISW2 by concerted action of histone H4 tail and extranucleosomal DNA. Molecular and Cellular Biology. 26: 7388-96. PMID 17015471 DOI: 10.1128/Mcb.01159-06  0.858
2006 Zofall M, Persinger J, Kassabov SR, Bartholomew B. Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nature Structural & Molecular Biology. 13: 339-46. PMID 16518397 DOI: 10.1038/Nsmb1071  0.892
2004 Zofall M, Persinger J, Bartholomew B. Functional role of extranucleosomal DNA and the entry site of the nucleosome in chromatin remodeling by ISW2. Molecular and Cellular Biology. 24: 10047-57. PMID 15509805 DOI: 10.1128/Mcb.24.22.10047-10057.2004  0.877
2004 Auty R, Steen H, Myers LC, Persinger J, Bartholomew B, Gygi SP, Buratowski S. Purification of active TFIID from Saccharomyces cerevisiae. Extensive promoter contacts and co-activator function. The Journal of Biological Chemistry. 279: 49973-81. PMID 15448131 DOI: 10.1074/Jbc.M409849200  0.576
2004 Kagalwala MN, Glaus BJ, Dang W, Zofall M, Bartholomew B. Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling. The Embo Journal. 23: 2092-104. PMID 15131696 DOI: 10.1038/Sj.Emboj.7600220  0.807
2004 Kassabov SR, Bartholomew B. Site-directed histone-DNA contact mapping for analysis of nucleosome dynamics. Methods in Enzymology. 375: 193-210. PMID 14870668 DOI: 10.1016/S0076-6879(03)75013-7  0.883
2003 Kassabov SR, Zhang B, Persinger J, Bartholomew B. SWI/SNF unwraps, slides, and rewraps the nucleosome. Molecular Cell. 11: 391-403. PMID 12620227 DOI: 10.1016/S1097-2765(03)00039-X  0.906
2003 Vary JC, Gangaraju VK, Qin J, Landel CC, Kooperberg C, Bartholomew B, Tsukiyama T. Yeast Isw1p forms two separable complexes in vivo. Molecular and Cellular Biology. 23: 80-91. PMID 12482963 DOI: 10.1128/Mcb.23.1.80-91.2003  0.829
2002 Kassabov SR, Henry NM, Zofall M, Tsukiyama T, Bartholomew B. High-resolution mapping of changes in histone-DNA contacts of nucleosomes remodeled by ISW2. Molecular and Cellular Biology. 22: 7524-34. PMID 12370299 DOI: 10.1128/Mcb.22.21.7524-7534.2002  0.894
2001 Persinger J, Bartholomew B. Site-directed DNA photoaffinity labeling of RNA polymerase III transcription complexes Methods in Molecular Biology (Clifton, N.J.). 148: 363-381. PMID 11357598 DOI: 10.1385/1-59259-208-2:363  0.507
2001 Sengupta SM, VanKanegan M, Persinger J, Logie C, Cairns BR, Peterson CL, Bartholomew B. The interactions of yeast SWI/SNF and RSC with the nucleosome before and after chromatin remodeling. The Journal of Biological Chemistry. 276: 12636-44. PMID 11304548 DOI: 10.1074/Jbc.M010470200  0.861
2000 Zofall M, Bartholomew B. Two novel dATP analogs for DNA photoaffinity labeling. Nucleic Acids Research. 28: 4382-90. PMID 11058139 DOI: 10.1093/Nar/28.21.4382  0.761
1999 Sengupta SM, Persinger J, Bartholomew B, Peterson CL. Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF. Methods (San Diego, Calif.). 19: 434-46. PMID 10579939 DOI: 10.1006/Meth.1999.0880  0.85
1999 Michelson RJ, Collard MW, Ziemba AJ, Persinger J, Bartholomew B, Huggenvik JI. Nuclear DEAF-1-related (NUDR) protein contains a novel DNA binding domain and represses transcription of the heterogeneous nuclear ribonucleoprotein A2/B1 promoter Journal of Biological Chemistry. 274: 30510-30519. PMID 10521432 DOI: 10.1074/Jbc.274.43.30510  0.516
1999 Persinger J, Sengupta SM, Bartholomew B. Spatial organization of the core region of yeast TFIIIB-DNA complexes. Molecular and Cellular Biology. 19: 5218-34. PMID 10373570 DOI: 10.1128/Mcb.19.7.5218  0.812
1998 Tate JJ, Persinger J, Bartholomew B. Survey of four different photoreactive moieties for DNA photoaffinity labeling of yeast RNA polymerase III transcription complexes Nucleic Acids Research. 26: 1421-1426. PMID 9490787 DOI: 10.1093/Nar/26.6.1421  0.62
1997 Radebaugh CA, Gong X, Bartholomew B, Paule MR. Identification of previously unrecognized common elements in eukaryotic promoters. A ribosomal RNA gene initiator element for RNA polymerase I Journal of Biological Chemistry. 272: 3141-3144. PMID 9013545 DOI: 10.1074/Jbc.272.6.3141  0.324
1996 Persinger J, Bartholomew B. Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling Journal of Biological Chemistry. 271: 33039-33046. PMID 8955150 DOI: 10.1074/Jbc.271.51.33039  0.517
1996 Pruss D, Bartholomew B, Persinger J, Hayes J, Arents G, Moudrianakis EN, Wolffe AP. An asymmetric model for the nucleosome: A binding site for linker histones inside the DNA gyres Science. 274: 614-617. PMID 8849453 DOI: 10.1126/Science.274.5287.614  0.743
1996 Lannutti BJ, Persinger J, Bartholomew B. Probing the protein-DNA contacts of a yeast RNA polymerase III transcription complex in a crude extract: Solid phase synthesis of DNA photoaffinity probes containing a novel photoreactive deoxycytidine analog Biochemistry. 35: 9821-9831. PMID 8703956 DOI: 10.1021/Bi960525X  0.613
1995 Bartholomew B, Tinker RL, Kassavetis GA, Geiduschek EP. Photochemical cross-linking assay for DNA tracking by replication proteins. Methods in Enzymology. 262: 476-94. PMID 8594372 DOI: 10.1016/0076-6879(95)62039-7  0.528
1994 Bartholomew B, Braun BR, Kassavetis GA, Geiduschek EP. Probing close DNA contacts of RNA polymerase III transcription complexes with the photoactive nucleoside 4-thiodeoxythymidine Journal of Biological Chemistry. 269: 18090-18095. PMID 8027070  0.501
1993 Bartholomew B, Durkovich D, Kassavetis GA, Geiduschek EP. Orientation and Topography of RNA Polymerase III in Transcription Complexes Molecular and Cellular Biology. 13: 942-952. PMID 8423814  0.355
1991 Bartholomew B, Kassavetis GA, Geiduschek EP. Two components of Saccharomyces cerevisiae transcription factor IIIB (TFIIIB) are stereospecifically located upstream of a tRNA gene and interact with the second-largest subunit of TFIIIC. Molecular and Cellular Biology. 11: 5181-9. PMID 1922038  0.508
1991 Kassavetis GA, Bartholomew B, Blanco JA, Johnson TE, Geiduschek EP. Two essential components of the Saccharomyces cerevisiae transcription factor TFIIIB: transcription and DNA-binding properties. Proceedings of the National Academy of Sciences of the United States of America. 88: 7308-12. PMID 1871137  0.559
1990 Bartholomew B, Kassavetis GA, Braun BR, Geiduschek EP. The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent Embo Journal. 9: 2197-2205. PMID 2100996  0.52
Show low-probability matches.