| Year |
Citation |
Score |
| 2021 |
Liu D, Goodman MF, Pham P, Yu K, Hsieh CL, Lieber MR. The mRNA tether model for activation-induced deaminase and its relevance for Ig somatic hypermutation and class switch recombination. Dna Repair. 110: 103271. PMID 34990960 DOI: 10.1016/j.dnarep.2021.103271 |
0.408 |
|
| 2021 |
Pham P, Shao Y, Cox MM, Goodman MF. Genomic landscape of single-stranded DNA gapped intermediates in Escherichia coli. Nucleic Acids Research. PMID 34951472 DOI: 10.1093/nar/gkab1269 |
0.32 |
|
| 2021 |
Sikand A, Jaszczur M, Bloom LB, Woodgate R, Cox MM, Goodman MF. The SOS Error-Prone DNA Polymerase V Mutasome and β-Sliding Clamp Acting in Concert on Undamaged DNA and during Translesion Synthesis. Cells. 10. PMID 34062858 DOI: 10.3390/cells10051083 |
0.43 |
|
| 2020 |
Henrikus SS, Henry C, McGrath AE, Jergic S, McDonald JP, Hellmich Y, Bruckbauer ST, Ritger ML, Cherry ME, Wood EA, Pham PT, Goodman MF, Woodgate R, Cox MM, van Oijen AM, et al. Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair. Nucleic Acids Research. PMID 32687193 DOI: 10.1093/Nar/Gkaa597 |
0.388 |
|
| 2019 |
Alnajjar KS, Krylov IS, Negahbani A, Haratipour P, Kashemirov BA, Huang J, Mahmoud M, McKenna CE, Goodman MF, Sweasy JB. A pre-catalytic non-covalent step governs DNA polymerase β fidelity. Nucleic Acids Research. PMID 31732732 DOI: 10.1093/Nar/Gkz1076 |
0.375 |
|
| 2019 |
Pham P, Malik S, Mak C, Calabrese PC, Roeder RG, Goodman MF. AID-RNA polymerase II transcription-dependent deamination of IgV DNA. Nucleic Acids Research. PMID 31566237 DOI: 10.1093/nar/gkz821 |
0.37 |
|
| 2019 |
Mak CH, Pham P, Goodman MF. Random Walk Enzymes: Information Theory, Quantum Isomorphism and Entropy Dispersion. The Journal of Physical Chemistry. A. PMID 30848911 DOI: 10.1021/acs.jpca.9b00910 |
0.334 |
|
| 2019 |
Oertell K, Florian J, Haratipour P, Crans DC, Kashemirov BA, Wilson SH, McKenna CE, Goodman MF. A Transition-State Perspective on Y-Family DNA Polymerase η Fidelity in Comparison with X-Family DNA Polymerases λ and β. Biochemistry. PMID 30839203 DOI: 10.1021/Acs.Biochem.9B00087 |
0.807 |
|
| 2019 |
Jaszczur MM, Vo DD, Stanciauskas R, Bertram JG, Sikand A, Cox MM, Woodgate R, Mak CH, Pinaud F, Goodman MF. Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP. Plos Genetics. 15: e1007956. PMID 30716079 DOI: 10.1371/Journal.Pgen.1007956 |
0.397 |
|
| 2018 |
Oertell K, Kashemirov BA, Negahbani A, Minard C, Haratipour P, Alnajjar KS, Sweasy JB, Batra VK, Beard WA, Wilson SH, McKenna CE, Goodman MF. Probing DNA base-dependent leaving group kinetic effects on the DNA polymerase transition state. Biochemistry. PMID 29889506 DOI: 10.1021/Acs.Biochem.8B00417 |
0.808 |
|
| 2018 |
Batra VK, Oertell K, Beard WA, Kashemirov BA, McKenna CE, Goodman MF, Wilson SH. Mapping functional substrate-enzyme interactions in the pol β active site through chemical biology: Structural responses to acidity modification of incoming dNTPs. Biochemistry. PMID 29874056 DOI: 10.1021/Acs.Biochem.8B00418 |
0.802 |
|
| 2018 |
Henrikus SS, Wood EA, McDonald JP, Cox MM, Woodgate R, Goodman MF, van Oijen AM, Robinson A. DNA polymerase IV primarily operates outside of DNA replication forks in Escherichia coli. Plos Genetics. 14: e1007161. PMID 29351274 DOI: 10.1371/Journal.Pgen.1007161 |
0.442 |
|
| 2017 |
Petruska J, Goodman MF. Relating DNA base-pairing in aqueous media to DNA polymerase fidelity. Nature Reviews. Chemistry. 1. PMID 30271879 DOI: 10.1038/s41570-017-0074 |
0.403 |
|
| 2017 |
Eid MMA, Shimoda M, Singh SK, Almofty SA, Pham P, Goodman MF, Maeda K, Sakaguchi N. Integrity of immunoglobulin variable region is supported by GANP during AID-induced somatic hypermutation in germinal center B cells. International Immunology. PMID 28541550 DOI: 10.1093/intimm/dxx032 |
0.334 |
|
| 2017 |
Alnajjar KS, Garcia-Barboza B, Negahbani A, Nakhjiri M, Kashemirov BA, McKenna CE, Goodman MF, Sweasy JB. A Change in the Rate-Determining Step of Polymerization by the K289M DNA Polymerase Beta Cancer-Associated Variant. Biochemistry. PMID 28326765 DOI: 10.1021/Acs.Biochem.6B01230 |
0.322 |
|
| 2016 |
Goodman MF. Better living with hyper-mutation. Environmental and Molecular Mutagenesis. PMID 27273795 DOI: 10.1002/em.22023 |
0.412 |
|
| 2016 |
Pham P, Afif SA, Shimoda M, Maeda K, Sakaguchi N, Pedersen LC, Goodman MF. Structural analysis of the activation-induced deoxycytidine deaminase required in immunoglobulin diversification. Dna Repair. 43: 48-56. PMID 27258794 DOI: 10.1016/J.Dnarep.2016.05.029 |
0.371 |
|
| 2016 |
Goodman MF, McDonald JP, Jaszczur MM, Woodgate R. Insights into the complex levels of regulation imposed on Escherichia coli DNA polymerase V. Dna Repair. PMID 27236212 DOI: 10.1016/j.dnarep.2016.05.005 |
0.314 |
|
| 2016 |
Oertell K, Harcourt EM, Mohsen MG, Petruska J, Kool ET, Goodman MF. Kinetic selection vs. free energy of DNA base pairing in control of polymerase fidelity. Proceedings of the National Academy of Sciences of the United States of America. PMID 27044101 DOI: 10.1073/Pnas.1600279113 |
0.812 |
|
| 2016 |
Jaszczur M, Bertram JG, Robinson A, van Oijen AM, Woodgate R, Cox MM, Goodman MF. Mutations for Worse or Better: Low-Fidelity DNA Synthesis by SOS DNA Polymerase V Is a Tightly Regulated Double-Edged Sword. Biochemistry. 55: 2309-18. PMID 27043933 DOI: 10.1021/Acs.Biochem.6B00117 |
0.442 |
|
| 2016 |
French JD, Johnatty SE, Lu Y, Beesley J, Gao B, Kalimutho M, Henderson MJ, Russell AJ, Kar S, Chen X, Hillman KM, Kaufmann S, Sivakumaran H, O'Reilly M, Wang C, ... ... Goodman MT, et al. Germline polymorphisms in an enhancer of PSIP1 are associated with progression-free survival in epithelial ovarian cancer. Oncotarget. PMID 26840454 DOI: 10.18632/Oncotarget.7047 |
0.358 |
|
| 2015 |
Bolton KL, Tyrer J, Song H, Ramus SJ, Notaridou M, Jones C, Sher T, Gentry-Maharaj A, Wozniak E, Tsai YY, Weidhaas J, Paik D, Van Den Berg DJ, Stram DO, Pearce CL, ... ... Goodman MT, et al. Corrigendum: Common variants at 19p13 are associated with susceptibility to ovarian cancer. Nature Genetics. 48: 101. PMID 26711112 DOI: 10.1038/Ng0116-101B |
0.304 |
|
| 2015 |
Senavirathne G, Bertram JG, Jaszczur M, Chaurasiya KR, Pham P, Mak CH, Goodman MF, Rueda D. Activation-induced deoxycytidine deaminase (AID) co-transcriptional scanning at single-molecule resolution. Nature Communications. 6: 10209. PMID 26681117 DOI: 10.1038/Ncomms10209 |
0.315 |
|
| 2015 |
Robinson A, McDonald JP, Caldas VE, Patel M, Wood EA, Punter CM, Ghodke H, Cox MM, Woodgate R, Goodman MF, van Oijen AM. Regulation of Mutagenic DNA Polymerase V Activation in Space and Time. Plos Genetics. 11: e1005482. PMID 26317348 DOI: 10.1371/Journal.Pgen.1005482 |
0.356 |
|
| 2015 |
Kadina AP, Kashemirov BA, Oertell K, Batra VK, Wilson SH, Goodman MF, McKenna CE. Two Scaffolds from Two Flips: (α,β)/(β,γ) CH2/NH "Met-Im" Analogues of dTTP. Organic Letters. 17: 2586-9. PMID 25970636 DOI: 10.1021/Acs.Orglett.5B00799 |
0.748 |
|
| 2015 |
Gruber AJ, Erdem AL, Sabat G, Karata K, Jaszczur MM, Vo DD, Olsen TM, Woodgate R, Goodman MF, Cox MM. A RecA protein surface required for activation of DNA polymerase V. Plos Genetics. 11: e1005066. PMID 25811184 DOI: 10.1371/Journal.Pgen.1005066 |
0.35 |
|
| 2014 |
Shakhmin A, Jones JP, Bychinskaya I, Zibinsky M, Oertell K, Goodman MF, Prakash GK. Preparation of fluorinated RNA nucleotide analogs potentially stable to enzymatic hydrolysis in RNA and DNA polymerase assays. Journal of Fluorine Chemistry. 167: 226-230. PMID 26279588 DOI: 10.1016/J.Jfluchem.2014.07.019 |
0.8 |
|
| 2014 |
Goodman MF. The discovery of error-prone DNA polymerase V and its unique regulation by RecA and ATP. The Journal of Biological Chemistry. 289: 26772-82. PMID 25160630 DOI: 10.1074/jbc.X114.607374 |
0.405 |
|
| 2014 |
Reha-Krantz LJ, Woodgate S, Goodman MF. Engineering processive DNA polymerases with maximum benefit at minimum cost. Frontiers in Microbiology. 5: 380. PMID 25136334 DOI: 10.3389/Fmicb.2014.00380 |
0.433 |
|
| 2014 |
Erdem AL, Jaszczur M, Bertram JG, Woodgate R, Cox MM, Goodman MF. DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase. Elife. 3: e02384. PMID 24843026 DOI: 10.7554/Elife.02384 |
0.432 |
|
| 2014 |
Oertell K, Chamberlain BT, Wu Y, Ferri E, Kashemirov BA, Beard WA, Wilson SH, McKenna CE, Goodman MF. Transition state in DNA polymerase β catalysis: rate-limiting chemistry altered by base-pair configuration. Biochemistry. 53: 1842-8. PMID 24580380 DOI: 10.1021/Bi500101Z |
0.803 |
|
| 2014 |
Donigan KA, McLenigan MP, Yang W, Goodman MF, Woodgate R. The steric gate of DNA polymerase ι regulates ribonucleotide incorporation and deoxyribonucleotide fidelity. The Journal of Biological Chemistry. 289: 9136-45. PMID 24532793 DOI: 10.1074/jbc.M113.545442 |
0.472 |
|
| 2014 |
Vaisman A, McDonald JP, Noll S, Huston D, Loeb G, Goodman MF, Woodgate R. Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli. Mutation Research. 761: 21-33. PMID 24495324 DOI: 10.1016/j.mrfmmm.2014.01.005 |
0.442 |
|
| 2014 |
Shakhmin A, Jones JP, Bychinskaya I, Zibinsky M, Oertell K, Goodman MF, Prakash GKS. Preparation of fluorinated RNA nucleotide analogs potentially stable to enzymatic hydrolysis in RNA and DNA polymerase assays Journal of Fluorine Chemistry. DOI: 10.1016/j.jfluchem.2014.07.019 |
0.791 |
|
| 2014 |
Senavirathne G, Bertram J, Jaszczur M, Pham P, Mak C, Goodman MF, Rueda D. Watching Aid Scanning Single Stranded and Transcribed DNA with Single Molecule Resolution Biophysical Journal. 106: 692a. DOI: 10.1016/J.Bpj.2013.11.3828 |
0.309 |
|
| 2013 |
Mak CH, Pham P, Afif SA, Goodman MF. A mathematical model for scanning and catalysis on single-stranded DNA, illustrated with activation-induced deoxycytidine deaminase. The Journal of Biological Chemistry. 288: 29786-95. PMID 23979486 DOI: 10.1074/jbc.M113.506550 |
0.367 |
|
| 2013 |
Pomerantz RT, Goodman MF, O'Donnell ME. DNA polymerases are error-prone at RecA-mediated recombination intermediates. Cell Cycle (Georgetown, Tex.). 12: 2558-63. PMID 23907132 DOI: 10.4161/Cc.25691 |
0.348 |
|
| 2013 |
Goodman MF, Woodgate R. Translesion DNA polymerases. Cold Spring Harbor Perspectives in Biology. 5: a010363. PMID 23838442 DOI: 10.1101/cshperspect.a010363 |
0.38 |
|
| 2013 |
Bojesen SE, Pooley KA, Johnatty SE, Beesley J, Michailidou K, Tyrer JP, Edwards SL, Pickett HA, Shen HC, Smart CE, Hillman KM, Mai PL, Lawrenson K, Stutz MD, Lu Y, ... ... Goodman MT, et al. Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer. Nature Genetics. 45: 371-84, 384e1-2. PMID 23535731 DOI: 10.1038/Ng.2566 |
0.331 |
|
| 2013 |
Shen H, Fridley BL, Song H, Lawrenson K, Cunningham JM, Ramus SJ, Cicek MS, Tyrer J, Stram D, Larson MC, Köbel M, Ziogas A, Zheng W, Yang HP, ... ... Goodman MT, et al. Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer. Nature Communications. 4: 1628. PMID 23535649 DOI: 10.1038/Ncomms2629 |
0.366 |
|
| 2013 |
Indiani C, Patel M, Goodman MF, O'Donnell ME. RecA acts as a switch to regulate polymerase occupancy in a moving replication fork. Proceedings of the National Academy of Sciences of the United States of America. 110: 5410-5. PMID 23509251 DOI: 10.1073/pnas.1303301110 |
0.367 |
|
| 2013 |
Senavirathne G, Jaszczur M, Auerbach PA, Upton TG, Chelico L, Goodman MF, Rueda D. Single-Stranded DNA Scanning and Deamination by APOBEC3G with Single-Molecule Resolution Biophysical Journal. 104: 177a. DOI: 10.1016/J.Bpj.2012.11.995 |
0.371 |
|
| 2012 |
McDonald JP, Vaisman A, Kuban W, Goodman MF, Woodgate R. Mechanisms employed by Escherichia coli to prevent ribonucleotide incorporation into genomic DNA by Pol V. Plos Genetics. 8: e1003030. PMID 23144626 DOI: 10.1371/journal.pgen.1003030 |
0.358 |
|
| 2012 |
Oertell K, Wu Y, Zakharova VM, Kashemirov BA, Shock DD, Beard WA, Wilson SH, McKenna CE, Goodman MF. Effect of β,γ-CHF- and β,γ-CHCl-dGTP halogen atom stereochemistry on the transition state of DNA polymerase β. Biochemistry. 51: 8491-501. PMID 23043620 DOI: 10.1021/Bi3010335 |
0.776 |
|
| 2012 |
Klvaňa M, Murphy DL, Jeřábek P, Goodman MF, Warshel A, Sweasy JB, Florián J. Catalytic effects of mutations of distant protein residues in human DNA polymerase β: theory and experiment. Biochemistry. 51: 8829-43. PMID 23013478 DOI: 10.1021/Bi300783T |
0.323 |
|
| 2012 |
Lu Y, Chen X, Beesley J, Johnatty SE, Defazio A, Lambrechts S, Lambrechts D, Despierre E, Vergotes I, Chang-Claude J, Hein R, Nickels S, Wang-Gohrke S, Dörk T, ... ... Goodman MT, et al. Genome-wide association study for ovarian cancer susceptibility using pooled DNA. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 15: 615-23. PMID 22794196 DOI: 10.1017/Thg.2012.38 |
0.387 |
|
| 2012 |
Kuban W, Vaisman A, McDonald JP, Karata K, Yang W, Goodman MF, Woodgate R. Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival. Dna Repair. 11: 726-32. PMID 22784977 DOI: 10.1016/j.dnarep.2012.06.005 |
0.368 |
|
| 2012 |
Mu Y, Prochnow C, Pham P, Chen XS, Goodman MF. A structural basis for the biochemical behavior of activation-induced deoxycytidine deaminase class-switch recombination-defective hyper-IgM-2 mutants. The Journal of Biological Chemistry. 287: 28007-16. PMID 22715099 DOI: 10.1074/Jbc.M112.370189 |
0.646 |
|
| 2012 |
Vaisman A, Kuban W, McDonald JP, Karata K, Yang W, Goodman MF, Woodgate R. Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity. Nucleic Acids Research. 40: 6144-57. PMID 22422840 DOI: 10.1093/Nar/Gks233 |
0.418 |
|
| 2012 |
Senavirathne G, Jaszczur M, Auerbach PA, Upton TG, Chelico L, Goodman MF, Rueda D. Single-stranded DNA scanning and deamination by APOBEC3G cytidine deaminase at single molecule resolution. The Journal of Biological Chemistry. 287: 15826-35. PMID 22362763 DOI: 10.1074/Jbc.M112.342790 |
0.414 |
|
| 2012 |
Karata K, Vaisman A, Goodman MF, Woodgate R. Simple and efficient purification of Escherichia coli DNA polymerase V: cofactor requirements for optimal activity and processivity in vitro. Dna Repair. 11: 431-40. PMID 22341652 DOI: 10.1016/j.dnarep.2012.01.012 |
0.336 |
|
| 2011 |
Beesley J, Pickett HA, Johnatty SE, Dunning AM, Chen X, Li J, Michailidou K, Lu Y, Rider DN, Palmieri RT, Stutz MD, Lambrechts D, Despierre E, Lambrechts S, Vergote I, ... ... Goodman MT, et al. Functional polymorphisms in the TERT promoter are associated with risk of serous epithelial ovarian and breast cancers. Plos One. 6: e24987. PMID 21949822 DOI: 10.1371/Journal.Pone.0024987 |
0.319 |
|
| 2011 |
Klvaňa M, Jeřábek P, Goodman MF, Florián J. An abridged transition state model to derive structure, dynamics, and energy components of DNA polymerase β fidelity. Biochemistry. 50: 7023-32. PMID 21739967 DOI: 10.1021/Bi200790S |
0.302 |
|
| 2011 |
Yamanaka K, Minko IG, Finkel SE, Goodman MF, Lloyd RS. Role of high-fidelity Escherichia coli DNA polymerase I in replication bypass of a deoxyadenosine DNA-peptide cross-link. Journal of Bacteriology. 193: 3815-21. PMID 21622737 DOI: 10.1128/Jb.01550-10 |
0.405 |
|
| 2011 |
Pham P, Calabrese P, Park SJ, Goodman MF. Analysis of a single-stranded DNA-scanning process in which activation-induced deoxycytidine deaminase (AID) deaminates C to U haphazardly and inefficiently to ensure mutational diversity. The Journal of Biological Chemistry. 286: 24931-42. PMID 21572036 DOI: 10.1074/Jbc.M111.241208 |
0.454 |
|
| 2011 |
Notaridou M, Quaye L, Dafou D, Jones C, Song H, Høgdall E, Kjaer SK, Christensen L, Høgdall C, Blaakaer J, McGuire V, Wu AH, Van Den Berg DJ, Pike MC, Gentry-Maharaj A, ... ... Goodman MT, et al. Common alleles in candidate susceptibility genes associated with risk and development of epithelial ovarian cancer. International Journal of Cancer. Journal International Du Cancer. 128: 2063-74. PMID 20635389 DOI: 10.1002/Ijc.25554 |
0.325 |
|
| 2010 |
Bolton KL, Tyrer J, Song H, Ramus SJ, Notaridou M, Jones C, Sher T, Gentry-Maharaj A, Wozniak E, Tsai YY, Weidhaas J, Paik D, Van Den Berg DJ, Stram DO, Pearce CL, ... ... Goodman MT, et al. Common variants at 19p13 are associated with susceptibility to ovarian cancer. Nature Genetics. 42: 880-4. PMID 20852633 DOI: 10.1038/Ng.666 |
0.314 |
|
| 2010 |
Surya Prakash GK, Zibinsky M, Upton TG, Kashemirov BA, McKenna CE, Oertell K, Goodman MF, Batra VK, Pedersen LC, Beard WA, Shock DD, Wilson SH, Olah GA. Synthesis and biological evaluation of fluorinated deoxynucleotide analogs based on bis-(difluoromethylene)triphosphoric acid. Proceedings of the National Academy of Sciences of the United States of America. 107: 15693-8. PMID 20724659 DOI: 10.1073/Pnas.1007430107 |
0.805 |
|
| 2010 |
Johnatty SE, Beesley J, Chen X, Macgregor S, Duffy DL, Spurdle AB, deFazio A, Gava N, Webb PM, Rossing MA, Doherty JA, Goodman MT, Lurie G, Thompson PJ, Wilkens LR, et al. Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility "hot-spot". Plos Genetics. 6: e1001016. PMID 20628624 DOI: 10.1371/Journal.Pgen.1001016 |
0.326 |
|
| 2010 |
Patel M, Jiang Q, Woodgate R, Cox MM, Goodman MF. A new model for SOS-induced mutagenesis: how RecA protein activates DNA polymerase V. Critical Reviews in Biochemistry and Molecular Biology. 45: 171-84. PMID 20441441 DOI: 10.3109/10409238.2010.480968 |
0.672 |
|
| 2010 |
Chelico L, Prochnow C, Erie DA, Chen XS, Goodman MF. Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G. The Journal of Biological Chemistry. 285: 16195-205. PMID 20212048 DOI: 10.1074/Jbc.M110.107987 |
0.468 |
|
| 2010 |
Phelan CM, Tsai YY, Goode EL, Vierkant RA, Fridley BL, Beesley J, Chen XQ, Webb PM, Chanock S, Cramer DW, Moysich K, Edwards RP, Chang-Claude J, Garcia-Closas M, Yang H, ... ... Goodman MT, et al. Polymorphism in the GALNT1 gene and epithelial ovarian cancer in non-Hispanic white women: the Ovarian Cancer Association Consortium. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 19: 600-4. PMID 20142253 DOI: 10.1158/1055-9965.Epi-09-0861 |
0.341 |
|
| 2010 |
McKenna CE, Kashemirov BA, Peterson LW, Goodman MF. Modifications to the dNTP triphosphate moiety: from mechanistic probes for DNA polymerases to antiviral and anti-cancer drug design. Biochimica Et Biophysica Acta. 1804: 1223-30. PMID 20079885 DOI: 10.1016/J.Bbapap.2010.01.005 |
0.402 |
|
| 2010 |
Bertram JG, Oertell K, Petruska J, Goodman MF. DNA polymerase fidelity: comparing direct competition of right and wrong dNTP substrates with steady state and pre-steady state kinetics. Biochemistry. 49: 20-8. PMID 20000359 DOI: 10.1021/Bi901653G |
0.798 |
|
| 2009 |
Madia F, Wei M, Yuan V, Hu J, Gattazzo C, Pham P, Goodman MF, Longo VD. Oncogene homologue Sch9 promotes age-dependent mutations by a superoxide and Rev1/Polzeta-dependent mechanism. The Journal of Cell Biology. 186: 509-23. PMID 19687253 DOI: 10.1083/Jcb.200906011 |
0.341 |
|
| 2009 |
Chelico L, Pham P, Petruska J, Goodman MF. Biochemical basis of immunological and retroviral responses to DNA-targeted cytosine deamination by activation-induced cytidine deaminase and APOBEC3G. The Journal of Biological Chemistry. 284: 27761-5. PMID 19684020 DOI: 10.1074/Jbc.R109.052449 |
0.336 |
|
| 2009 |
Jiang Q, Karata K, Woodgate R, Cox MM, Goodman MF. The active form of DNA polymerase V is UmuD'(2)C-RecA-ATP. Nature. 460: 359-63. PMID 19606142 DOI: 10.1038/Nature08178 |
0.653 |
|
| 2009 |
Chelico L, Pham P, Goodman MF. Mechanisms of APOBEC3G-catalyzed processive deamination of deoxycytidine on single-stranded DNA. Nature Structural & Molecular Biology. 16: 454-5; author reply . PMID 19421154 DOI: 10.1038/nsmb0509-454 |
0.399 |
|
| 2009 |
Kamerlin SC, McKenna CE, Goodman MF, Goondman MF, Warshel A. A computational study of the hydrolysis of dGTP analogues with halomethylene-modified leaving groups in solution: implications for the mechanism of DNA polymerases. Biochemistry. 48: 5963-71. PMID 19391628 DOI: 10.1021/Bi900140C |
0.424 |
|
| 2009 |
Indiani C, Langston LD, Yurieva O, Goodman MF, O'Donnell M. Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase. Proceedings of the National Academy of Sciences of the United States of America. 106: 6031-8. PMID 19279203 DOI: 10.1073/Pnas.0901403106 |
0.379 |
|
| 2009 |
Schildkraut JM, Goode EL, Clyde MA, Iversen ES, Moorman PG, Berchuck A, Marks JR, Lissowska J, Brinton L, Peplonska B, Cunningham JM, Vierkant RA, Rider DN, Chenevix-Trench G, Webb PM, ... ... Goodman MT, et al. Single nucleotide polymorphisms in the TP53 region and susceptibility to invasive epithelial ovarian cancer. Cancer Research. 69: 2349-57. PMID 19276375 DOI: 10.1158/0008-5472.Can-08-2902 |
0.355 |
|
| 2009 |
Rausch JW, Chelico L, Goodman MF, Le Grice SF. Dissecting APOBEC3G substrate specificity by nucleoside analog interference. The Journal of Biological Chemistry. 284: 7047-58. PMID 19136562 DOI: 10.1074/jbc.M807258200 |
0.302 |
|
| 2009 |
Pearce CL, Near AM, Van Den Berg DJ, Ramus SJ, Gentry-Maharaj A, Menon U, Gayther SA, Anderson AR, Edlund CK, Wu AH, Chen X, Beesley J, Webb PM, Holt SK, Chen C, ... ... Goodman MT, et al. Validating genetic risk associations for ovarian cancer through the international Ovarian Cancer Association Consortium. British Journal of Cancer. 100: 412-20. PMID 19127255 DOI: 10.1038/Sj.Bjc.6604820 |
0.346 |
|
| 2009 |
Chelico L, Pham P, Goodman MF. Stochastic properties of processive cytidine DNA deaminases AID and APOBEC3G. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 583-93. PMID 19022738 DOI: 10.1098/rstb.2008.0195 |
0.306 |
|
| 2009 |
Prochnow C, Bransteitter R, Goodman MF, Chen XS. The prospect of APOBEC3G for the future of HIV therapy Hiv Therapy. 3: 7-10. DOI: 10.2217/17584310.3.1.7 |
0.737 |
|
| 2008 |
Palmieri RT, Wilson MA, Iversen ES, Clyde MA, Calingaert B, Moorman PG, Poole C, Anderson AR, Anderson S, Anton-Culver H, Beesley J, Hogdall E, Brewster W, Carney ME, Chen X, ... ... Goodman MT, et al. Polymorphism in the IL18 gene and epithelial ovarian cancer in non-Hispanic white women. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 17: 3567-72. PMID 19064572 DOI: 10.1158/1055-9965.Epi-08-0548 |
0.324 |
|
| 2008 |
Holden LG, Prochnow C, Chang YP, Bransteitter R, Chelico L, Sen U, Stevens RC, Goodman MF, Chen XS. Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications. Nature. 456: 121-4. PMID 18849968 DOI: 10.1038/Nature07357 |
0.803 |
|
| 2008 |
Minko IG, Yamanaka K, Kozekov ID, Kozekova A, Indiani C, O'Donnell ME, Jiang Q, Goodman MF, Rizzo CJ, Lloyd RS. Replication bypass of the acrolein-mediated deoxyguanine DNA-peptide cross-links by DNA polymerases of the DinB family. Chemical Research in Toxicology. 21: 1983-90. PMID 18788757 DOI: 10.1021/Tx800174A |
0.652 |
|
| 2008 |
Kumari A, Minko IG, Harbut MB, Finkel SE, Goodman MF, Lloyd RS. Replication bypass of interstrand cross-link intermediates by Escherichia coli DNA polymerase IV. The Journal of Biological Chemistry. 283: 27433-7. PMID 18697749 DOI: 10.1074/Jbc.M801237200 |
0.359 |
|
| 2008 |
Ramus SJ, Vierkant RA, Johnatty SE, Pike MC, Van Den Berg DJ, Wu AH, Pearce CL, Menon U, Gentry-Maharaj A, Gayther SA, Dicioccio RA, McGuire V, Whittemore AS, Song H, Easton DF, ... ... Goodman MT, et al. Consortium analysis of 7 candidate SNPs for ovarian cancer. International Journal of Cancer. Journal International Du Cancer. 123: 380-8. PMID 18431743 DOI: 10.1002/Ijc.23448 |
0.311 |
|
| 2008 |
Pham P, Smolka MB, Calabrese P, Landolph A, Zhang K, Zhou H, Goodman MF. Impact of phosphorylation and phosphorylation-null mutants on the activity and deamination specificity of activation-induced cytidine deaminase. The Journal of Biological Chemistry. 283: 17428-39. PMID 18417471 DOI: 10.1074/Jbc.M802121200 |
0.327 |
|
| 2008 |
Chelico L, Sacho EJ, Erie DA, Goodman MF. A model for oligomeric regulation of APOBEC3G cytosine deaminase-dependent restriction of HIV. The Journal of Biological Chemistry. 283: 13780-91. PMID 18362149 DOI: 10.1074/Jbc.M801004200 |
0.366 |
|
| 2008 |
Furukohri A, Goodman MF, Maki H. A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp. The Journal of Biological Chemistry. 283: 11260-9. PMID 18308729 DOI: 10.1074/jbc.M709689200 |
0.418 |
|
| 2008 |
Peled JU, Kuang FL, Iglesias-Ussel MD, Roa S, Kalis SL, Goodman MF, Scharff MD. The biochemistry of somatic hypermutation. Annual Review of Immunology. 26: 481-511. PMID 18304001 DOI: 10.1146/Annurev.Immunol.26.021607.090236 |
0.385 |
|
| 2008 |
Sucato CA, Upton TG, Kashemirov BA, Osuna J, Oertell K, Beard WA, Wilson SH, Florián J, Warshel A, McKenna CE, Goodman MF. DNA polymerase beta fidelity: halomethylene-modified leaving groups in pre-steady-state kinetic analysis reveal differences at the chemical transition state. Biochemistry. 47: 870-9. PMID 18161950 DOI: 10.1021/Bi7014162 |
0.785 |
|
| 2007 |
McKenna CE, Kashemirov BA, Upton TG, Batra VK, Goodman MF, Pedersen LC, Beard WA, Wilson SH. (R)-beta,gamma-fluoromethylene-dGTP-DNA ternary complex with DNA polymerase beta. Journal of the American Chemical Society. 129: 15412-3. PMID 18031037 DOI: 10.1021/Ja072127V |
0.36 |
|
| 2007 |
Silverman AP, Jiang Q, Goodman MF, Kool ET. Steric and electrostatic effects in DNA synthesis by the SOS-induced DNA polymerases II and IV of Escherichia coli. Biochemistry. 46: 13874-81. PMID 17988102 DOI: 10.1021/Bi700851Z |
0.631 |
|
| 2007 |
Schlacher K, Goodman MF. Lessons from 50 years of SOS DNA-damage-induced mutagenesis. Nature Reviews. Molecular Cell Biology. 8: 587-94. PMID 17551516 DOI: 10.1038/Nrm2198 |
0.666 |
|
| 2007 |
Pham P, Chelico L, Goodman MF. DNA deaminases AID and APOBEC3G act processively on single-stranded DNA. Dna Repair. 6: 689-92; author reply. PMID 17291835 DOI: 10.1016/j.dnarep.2007.01.001 |
0.418 |
|
| 2007 |
Gu J, Lu H, Tippin B, Shimazaki N, Goodman MF, Lieber MR. XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gaps. The Embo Journal. 26: 1010-23. PMID 17290226 DOI: 10.1038/Sj.Emboj.7601559 |
0.813 |
|
| 2007 |
Martínek V, Bren U, Goodman MF, Warshel A, Florián J. DNA polymerase beta catalytic efficiency mirrors the Asn279-dCTP H-bonding strength. Febs Letters. 581: 775-80. PMID 17286973 DOI: 10.1016/J.Febslet.2007.01.042 |
0.34 |
|
| 2007 |
Sucato CA, Upton TG, Kashemirov BA, Batra VK, Martínek V, Xiang Y, Beard WA, Pedersen LC, Wilson SH, McKenna CE, Florián J, Warshel A, Goodman MF. Modifying the beta,gamma leaving-group bridging oxygen alters nucleotide incorporation efficiency, fidelity, and the catalytic mechanism of DNA polymerase beta. Biochemistry. 46: 461-71. PMID 17209556 DOI: 10.1021/Bi061517B |
0.8 |
|
| 2007 |
Prochnow C, Bransteitter R, Klein MG, Goodman MF, Chen XS. The APOBEC-2 crystal structure and functional implications for the deaminase AID. Nature. 445: 447-51. PMID 17187054 DOI: 10.1038/Nature05492 |
0.798 |
|
| 2006 |
Schlacher K, Cox MM, Woodgate R, Goodman MF. RecA acts in trans to allow replication of damaged DNA by DNA polymerase V. Nature. 442: 883-7. PMID 16929290 DOI: 10.1038/Nature05042 |
0.686 |
|
| 2006 |
Schlacher K, Jiang Q, Woodgate R, Goodman MF. Purification and characterization of Escherichia coli DNA polymerase V. Methods in Enzymology. 408: 378-90. PMID 16793381 DOI: 10.1016/S0076-6879(06)08023-2 |
0.762 |
|
| 2006 |
Xiang Y, Oelschlaeger P, Florián J, Goodman MF, Warshel A. Simulating the effect of DNA polymerase mutations on transition-state energetics and fidelity: evaluating amino acid group contribution and allosteric coupling for ionized residues in human pol beta. Biochemistry. 45: 7036-48. PMID 16752894 DOI: 10.1021/Bi060147O |
0.393 |
|
| 2006 |
Bransteitter R, Sneeden JL, Allen S, Pham P, Goodman MF. First AID (activation-induced cytidine deaminase) is needed to produce high affinity isotype-switched antibodies. The Journal of Biological Chemistry. 281: 16833-6. PMID 16624806 DOI: 10.1074/Jbc.R600006200 |
0.795 |
|
| 2006 |
Chelico L, Pham P, Calabrese P, Goodman MF. APOBEC3G DNA deaminase acts processively 3' --> 5' on single-stranded DNA. Nature Structural & Molecular Biology. 13: 392-9. PMID 16622407 DOI: 10.1038/Nsmb1086 |
0.45 |
|
| 2006 |
Schlacher K, Pham P, Cox MM, Goodman MF. Roles of DNA polymerase V and RecA protein in SOS damage-induced mutation. Chemical Reviews. 106: 406-19. PMID 16464012 DOI: 10.1021/Cr0404951 |
0.638 |
|
| 2005 |
Goodman MF, Kunkel TA. Dale Mosbaugh commemorative DNA Repair Dna Repair. 4: 1345. PMID 16257587 DOI: 10.1016/j.dnarep.2005.09.012 |
0.385 |
|
| 2005 |
Shen X, Woodgate R, Goodman MF. Lyase activities intrinsic to Escherichia coli polymerases IV and V. Dna Repair. 4: 1368-73. PMID 16202661 DOI: 10.1016/J.Dnarep.2005.08.005 |
0.655 |
|
| 2005 |
Indiani C, McInerney P, Georgescu R, Goodman MF, O'Donnell M. A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously. Molecular Cell. 19: 805-15. PMID 16168375 DOI: 10.1016/j.molcel.2005.08.011 |
0.395 |
|
| 2005 |
Duquette ML, Pham P, Goodman MF, Maizels N. AID binds to transcription-induced structures in c-MYC that map to regions associated with translocation and hypermutation. Oncogene. 24: 5791-8. PMID 15940261 DOI: 10.1038/Sj.Onc.1208746 |
0.303 |
|
| 2005 |
Florián J, Goodman MF, Warshel A. Computer simulations of protein functions: searching for the molecular origin of the replication fidelity of DNA polymerases. Proceedings of the National Academy of Sciences of the United States of America. 102: 6819-24. PMID 15863620 DOI: 10.1073/Pnas.0408173102 |
0.342 |
|
| 2005 |
Pham P, Bransteitter R, Goodman MF. Reward versus risk: DNA cytidine deaminases triggering immunity and disease. Biochemistry. 44: 2703-15. PMID 15723516 DOI: 10.1021/Bi047481+ |
0.811 |
|
| 2005 |
Schlacher K, Leslie K, Wyman C, Woodgate R, Cox MM, Goodman MF. DNA polymerase V and RecA protein, a minimal mutasome. Molecular Cell. 17: 561-72. PMID 15721259 DOI: 10.1016/J.Molcel.2005.01.006 |
0.656 |
|
| 2005 |
Larijani M, Frieder D, Sonbuchner TM, Bransteitter R, Goodman MF, Bouhassira EE, Scharff MD, Martin A. Methylation protects cytidines from AID-mediated deamination. Molecular Immunology. 42: 599-604. PMID 15607819 DOI: 10.1016/J.Molimm.2004.09.007 |
0.776 |
|
| 2004 |
Tippin B, Pham P, Bransteitter R, Goodman MF. Somatic hypermutation: a mutational panacea. Advances in Protein Chemistry. 69: 307-35. PMID 15588848 DOI: 10.1016/S0065-3233(04)69011-5 |
0.761 |
|
| 2004 |
Ma Y, Lu H, Tippin B, Goodman MF, Shimazaki N, Koiwai O, Hsieh CL, Schwarz K, Lieber MR. A biochemically defined system for mammalian nonhomologous DNA end joining. Molecular Cell. 16: 701-13. PMID 15574326 DOI: 10.1016/J.Molcel.2004.11.017 |
0.817 |
|
| 2004 |
Kroeger KM, Kim J, Goodman MF, Greenberg MM. Effects of the C4'-oxidized abasic site on replication in Escherichia coli. An unusually large deletion is induced by a small lesion. Biochemistry. 43: 13621-7. PMID 15504024 DOI: 10.1021/Bi048337R |
0.317 |
|
| 2004 |
Bransteitter R, Pham P, Calabrese P, Goodman MF. Biochemical analysis of hypermutational targeting by wild type and mutant activation-induced cytidine deaminase. The Journal of Biological Chemistry. 279: 51612-21. PMID 15371439 DOI: 10.1074/Jbc.M408135200 |
0.809 |
|
| 2004 |
Tippin B, Kobayashi S, Bertram JG, Goodman MF. To slip or skip, visualizing frameshift mutation dynamics for error-prone DNA polymerases. The Journal of Biological Chemistry. 279: 45360-8. PMID 15339923 DOI: 10.1074/Jbc.M408600200 |
0.813 |
|
| 2004 |
Bertram JG, Bloom LB, O'Donnell M, Goodman MF. Increased dNTP binding affinity reveals a nonprocessive role for Escherichia coli beta clamp with DNA polymerase IV. The Journal of Biological Chemistry. 279: 33047-50. PMID 15210708 DOI: 10.1074/jbc.C400265200 |
0.441 |
|
| 2004 |
Tippin B, Pham P, Goodman MF. Error-prone replication for better or worse. Trends in Microbiology. 12: 288-95. PMID 15165607 DOI: 10.1016/J.Tim.2004.04.004 |
0.811 |
|
| 2004 |
Quach N, Goodman MF, Shibata D. In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR. Bmc Clinical Pathology. 4: 1. PMID 15028125 DOI: 10.1186/1472-6890-4-1 |
0.397 |
|
| 2003 |
López de Saro FJ, Georgescu RE, Goodman MF, O'Donnell M. Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair. The Embo Journal. 22: 6408-18. PMID 14633999 DOI: 10.1093/Emboj/Cdg603 |
0.419 |
|
| 2003 |
Shen X, Woodgate R, Goodman MF. Escherichia coli DNA polymerase V subunit exchange: a post-SOS mechanism to curtail error-prone DNA synthesis. The Journal of Biological Chemistry. 278: 52546-50. PMID 14573598 DOI: 10.1074/Jbc.M310127200 |
0.616 |
|
| 2003 |
Bruck I, Goodman MF, O'Donnell M. The essential C family DnaE polymerase is error-prone and efficient at lesion bypass. The Journal of Biological Chemistry. 278: 44361-8. PMID 12949067 DOI: 10.1074/Jbc.M308307200 |
0.344 |
|
| 2003 |
Florián J, Goodman MF, Warshel A. Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase. Journal of the American Chemical Society. 125: 8163-77. PMID 12837086 DOI: 10.1021/Ja028997O |
0.321 |
|
| 2003 |
Pham P, Bransteitter R, Petruska J, Goodman MF. Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation. Nature. 424: 103-7. PMID 12819663 DOI: 10.1038/Nature01760 |
0.834 |
|
| 2003 |
Bransteitter R, Pham P, Scharff MD, Goodman MF. Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proceedings of the National Academy of Sciences of the United States of America. 100: 4102-7. PMID 12651944 DOI: 10.1073/Pnas.0730835100 |
0.834 |
|
| 2003 |
Florián J, Goodman MF, Warshel A. Computer simulation studies of the fidelity of DNA polymerases. Biopolymers. 68: 286-99. PMID 12601790 DOI: 10.1002/Bip.10244 |
0.413 |
|
| 2003 |
Ason B, Handayani R, Williams CR, Bertram JG, Hingorani MM, O'Donnell M, Goodman MF, Bloom LB. Mechanism of loading the Escherichia coli DNA polymerase III beta sliding clamp on DNA. Bona fide primer/templates preferentially trigger the gamma complex to hydrolyze ATP and load the clamp. The Journal of Biological Chemistry. 278: 10033-40. PMID 12519754 DOI: 10.1074/Jbc.M211741200 |
0.406 |
|
| 2002 |
Hartenstine MJ, Goodman MF, Petruska J. Weak strand displacement activity enables human DNA polymerase beta to expand CAG/CTG triplet repeats at strand breaks. The Journal of Biological Chemistry. 277: 41379-89. PMID 12196536 DOI: 10.1074/Jbc.M207013200 |
0.424 |
|
| 2002 |
Pham P, Seitz EM, Saveliev S, Shen X, Woodgate R, Cox MM, Goodman MF. Two distinct modes of RecA action are required for DNA polymerase V-catalyzed translesion synthesis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11061-6. PMID 12177433 DOI: 10.1073/Pnas.172197099 |
0.576 |
|
| 2002 |
Kobayashi S, Valentine MR, Pham P, O'Donnell M, Goodman MF. Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignment. The Journal of Biological Chemistry. 277: 34198-207. PMID 12097328 DOI: 10.1074/Jbc.M204826200 |
0.435 |
|
| 2002 |
Goodman MF. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annual Review of Biochemistry. 71: 17-50. PMID 12045089 DOI: 10.1146/annurev.biochem.71.083101.124707 |
0.429 |
|
| 2002 |
Rangarajan S, Woodgate R, Goodman MF. Replication restart in UV-irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins. Molecular Microbiology. 43: 617-28. PMID 11929519 DOI: 10.1046/j.1365-2958.2002.02747.x |
0.307 |
|
| 2002 |
Shen X, Sayer JM, Kroth H, Ponten I, O'Donnell M, Woodgate R, Jerina DM, Goodman MF. Efficiency and accuracy of SOS-induced DNA polymerases replicating benzo[a]pyrene-7,8-diol 9,10-epoxide A and G adducts. The Journal of Biological Chemistry. 277: 5265-74. PMID 11734560 DOI: 10.1074/Jbc.M109575200 |
0.597 |
|
| 2002 |
Wang Z, Lazarov E, O'Donnell M, Goodman MF. Resolving a fidelity paradox: why Escherichia coli DNA polymerase II makes more base substitution errors in AT- compared with GC-rich DNA. The Journal of Biological Chemistry. 277: 4446-54. PMID 11733526 DOI: 10.1074/Jbc.M110006200 |
0.768 |
|
| 2002 |
Florián J, Goodman MF, Warshel A. Theoretical investigation of the binding free energies and key substrate-recognition components of the replication fidelity of human DNA polymerase β Journal of Physical Chemistry B. 106: 5739-5753. DOI: 10.1021/Jp020790U |
0.422 |
|
| 2001 |
Silvian LF, Toth EA, Pham P, Goodman MF, Ellenberger T. Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus Nature Structural Biology. 8: 984-989. PMID 11685247 DOI: 10.1038/Nsb1101-984 |
0.425 |
|
| 2001 |
Ohmori H, Friedberg EC, Fuchs RP, Goodman MF, Hanaoka F, Hinkle D, Kunkel TA, Lawrence CW, Livneh Z, Nohmi T, Prakash L, Prakash S, Todo T, Walker GC, Wang Z, et al. The Y-family of DNA polymerases. Molecular Cell. 8: 7-8. PMID 11515498 DOI: 10.1016/S1097-2765(01)00278-7 |
0.302 |
|
| 2001 |
Pham P, Rangarajan S, Woodgate R, Goodman MF. Roles of DNA polymerases V and II in SOS-induced error-prone and error-free repair in Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 98: 8350-8354. PMID 11459974 DOI: 10.1073/pnas.111007198 |
0.424 |
|
| 2001 |
Poltoratsky V, Woo CJ, Tippin B, Martin A, Goodman MF, Scharff MD. Expression of error-prone polymerases in BL2 cells activated for Ig somatic hypermutation. Proceedings of the National Academy of Sciences of the United States of America. 98: 7976-81. PMID 11427727 DOI: 10.1073/Pnas.141222198 |
0.757 |
|
| 2001 |
Vaisman A, Tissier A, Frank EG, Goodman MF, Woodgate R. Human DNA polymerase iota promiscuous mismatch extension. The Journal of Biological Chemistry. 276: 30615-22. PMID 11402031 DOI: 10.1074/jbc.M102694200 |
0.329 |
|
| 2001 |
Tippin B, Goodman MF. A new class of errant DNA polymerases provides candidates for somatic hypermutation Philosophical Transactions of the Royal Society B: Biological Sciences. 355: 47-51. PMID 11205329 DOI: 10.1098/Rstb.2000.0747 |
0.788 |
|
| 2001 |
Pham P, Bertram JG, O'Donnell M, Woodgate R, Goodman MF. A model for SOS-lesion-targeted mutations in Escherichia coli. Nature. 409: 366-70. PMID 11201748 DOI: 10.1038/35053116 |
0.408 |
|
| 2000 |
Goodman MF, Woodgate R. The biochemical basis and in vivo regulation of SOS-induced mutagenesis promoted by Escherichia coli DNA polymerase V (UmuD′2C) Cold Spring Harbor Symposia On Quantitative Biology. 65: 31-40. PMID 12760018 DOI: 10.1101/sqb.2000.65.31 |
0.367 |
|
| 2000 |
Goodman MF, Tippin B. The expanding polymerase universe Nature Reviews Molecular Cell Biology. 1: 101-109. PMID 11253362 DOI: 10.1038/35040051 |
0.811 |
|
| 2000 |
Bertram JG, Bloom LB, Hingorani MM, Beechem JM, O'Donnell M, Goodman MF. Molecular mechanism and energetics of clamp assembly in Escherichia coli. The role of ATP hydrolysis when gamma complex loads beta on DNA. The Journal of Biological Chemistry. 275: 28413-20. PMID 10874049 DOI: 10.1074/Jbc.M910441199 |
0.342 |
|
| 2000 |
Hartenstine MJ, Goodman MF, Petruska J. Base stacking and even/odd behavior of hairpin loops in DNA triplet repeat slippage and expansion with DNA polymerase. The Journal of Biological Chemistry. 275: 18382-90. PMID 10849445 DOI: 10.1074/Jbc.275.24.18382 |
0.388 |
|
| 2000 |
Tang M, Pham P, Shen X, Taylor JS, O'Donnell M, Woodgate R, Goodman MF. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature. 404: 1014-8. PMID 10801133 DOI: 10.1038/35010020 |
0.761 |
|
| 2000 |
Goodman MF. Coping with replication 'train wrecks' in Escherichia coli using Pol V, Pol II and RecA proteins Trends in Biochemical Sciences. 25: 189-195. PMID 10754553 DOI: 10.1016/S0968-0004(00)01564-4 |
0.407 |
|
| 2000 |
Goodman MF, Tippin B. Sloppier copier DNA polymerases involved in genome repair Current Opinion in Genetics and Development. 10: 162-168. PMID 10753775 DOI: 10.1016/S0959-437X(00)00057-5 |
0.809 |
|
| 2000 |
Chen X, Zuo S, Kelman Z, O'Donnell M, Hurwitz J, Goodman MF. Fidelity of eucaryotic DNA polymerase δ holoenzyme from Schizosaccharomyces pombe Journal of Biological Chemistry. 275: 17677-17682. PMID 10748208 DOI: 10.1074/Jbc.M910278199 |
0.559 |
|
| 2000 |
Frank EG, Cheng N, Do CC, Cerritelli ME, Bruck I, Goodman MF, Egelman EH, Woodgate R, Steven AC. Visualization of two binding sites for the Escherichia coli UmuD'(2)C complex (DNA pol V) on RecA-ssDNA filaments. Journal of Molecular Biology. 297: 585-97. PMID 10731413 DOI: 10.1006/Jmbi.2000.3591 |
0.313 |
|
| 2000 |
Cox MM, Goodman MF, Kreuzer KN, Sherratt DJ, Sandler SJ, Marians KJ. The importance of repairing stalled replication forks Nature. 404: 37-41. PMID 10716434 DOI: 10.1038/35003501 |
0.368 |
|
| 2000 |
Ason B, Bertram JG, Hingorani MM, Beechem JM, O'Donnell M, Goodman MF, Bloom LB. A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader. The Journal of Biological Chemistry. 275: 3006-15. PMID 10644772 DOI: 10.1074/Jbc.275.4.3006 |
0.388 |
|
| 1999 |
Hingorani MM, Bloom LB, Goodman MF, O'Donnell M. Division of labor--sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA. The Embo Journal. 18: 5131-44. PMID 10487764 DOI: 10.1093/Emboj/18.18.5131 |
0.352 |
|
| 1999 |
Rangarajan S, Woodgate R, Goodman MF. A phenotype for enigmatic DNA polymerase II: A pivotal role for pol II in replication restart in UV-irradiated Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 96: 9224-9229. PMID 10430924 DOI: 10.1073/pnas.96.16.9224 |
0.334 |
|
| 1999 |
Tang M, Shen X, Frank EG, O'Donnell M, Woodgate R, Goodman MF. UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V. Proceedings of the National Academy of Sciences of the United States of America. 96: 8919-24. PMID 10430871 DOI: 10.1073/Pnas.96.16.8919 |
0.753 |
|
| 1999 |
Efrati E, Tocco G, Eritja R, Wilson SH, Goodman MF. "Action-at-a-distance" mutagenesis. 8-oxo-7, 8-dihydro-2'-deoxyguanosine causes base substitution errors at neighboring template sites when copied by DNA polymerase beta. The Journal of Biological Chemistry. 274: 15920-6. PMID 10336498 DOI: 10.1074/jbc.274.22.15920 |
0.404 |
|
| 1998 |
Rehrauer WM, Bruck I, Woodgate R, Goodman MF, Kowalczykowski SC. Modulation of RecA nucleoprotein function by the mutagenic UmuD'C protein complex. The Journal of Biological Chemistry. 273: 32384-7. PMID 9829966 DOI: 10.1074/Jbc.273.49.32384 |
0.333 |
|
| 1998 |
Bertram JG, Bloom LB, Turner J, O'Donnell M, Beechem JM, Goodman MF. Pre-steady state analysis of the assembly of wild type and mutant circular clamps of Escherichia coli DNA polymerase III onto DNA. The Journal of Biological Chemistry. 273: 24564-74. PMID 9733751 DOI: 10.1074/jbc.273.38.24564 |
0.343 |
|
| 1998 |
Reha-Krantz LJ, Marquez LA, Elisseeva E, Baker RP, Bloom LB, Dunford HB, Goodman MF. The proofreading pathway of bacteriophage T4 DNA polymerase. The Journal of Biological Chemistry. 273: 22969-76. PMID 9722519 DOI: 10.1074/jbc.273.36.22969 |
0.409 |
|
| 1998 |
Tang M, Bruck I, Eritja R, Turner J, Frank EG, Woodgate R, O'Donnell M, Goodman MF. Biochemical basis of SOS-induced mutagenesis in Escherichia coli: reconstitution of in vitro lesion bypass dependent on the UmuD'2C mutagenic complex and RecA protein. Proceedings of the National Academy of Sciences of the United States of America. 95: 9755-60. PMID 9707548 DOI: 10.1073/Pnas.95.17.9755 |
0.65 |
|
| 1998 |
Otto MR, Bloom LB, Goodman MF, Beechem JM. Stopped-flow fluorescence study of precatalytic primer strand base-unstacking transitions in the exonuclease cleft of bacteriophage T4 DNA polymerase. Biochemistry. 37: 10156-63. PMID 9665721 DOI: 10.1021/Bi9800754 |
0.377 |
|
| 1998 |
Beechem JM, Otto MR, Bloom LB, Eritja R, Reha-Krantz LJ, Goodman MF. Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase. Biochemistry. 37: 10144-55. PMID 9665720 DOI: 10.1021/Bi980074B |
0.329 |
|
| 1998 |
Bhui-Kaur A, Goodman MF, Tower J. DNA mismatch repair catalyzed by extracts of mitotic, postmitotic, and senescent Drosophila tissues and involvement of mei-9 gene function for full activity Molecular and Cellular Biology. 18: 1436-1443. PMID 9488459 DOI: 10.1128/Mcb.18.3.1436 |
0.341 |
|
| 1998 |
Petruska J, Hartenstine MJ, Goodman MF. Analysis of strand slippage in DNA polymerase expansions of CAG/CTG triplet repeats associated with neurodegenerative disease. The Journal of Biological Chemistry. 273: 5204-10. PMID 9478975 DOI: 10.1074/Jbc.273.9.5204 |
0.357 |
|
| 1997 |
Fygenson DK, Goodman MF. Gel kinetic analysis of polymerase fidelity in the presence of multiple enzyme DNA encounters Journal of Biological Chemistry. 272: 27931-27935. PMID 9346942 DOI: 10.1074/jbc.272.44.27931 |
0.372 |
|
| 1997 |
Bloom LB, Chen X, Fygenson DK, Turner J, O'Donnell M, Goodman MF. Fidelity of Escherichia coli DNA polymerase III holoenzyme. The effects of beta, gamma complex processivity proteins and epsilon proofreading exonuclease on nucleotide misincorporation efficiencies. The Journal of Biological Chemistry. 272: 27919-30. PMID 9346941 DOI: 10.1074/Jbc.272.44.27919 |
0.509 |
|
| 1997 |
Rangarajan S, Gudmundsson G, Qiu Z, Foster PL, Goodman MF. Escherichia coli DNA polymerase II catalyzes chromosomal and episomal DNA synthesis in vivo. Proceedings of the National Academy of Sciences of the United States of America. 94: 946-51. PMID 9023362 DOI: 10.1073/Pnas.94.3.946 |
0.33 |
|
| 1996 |
Bloom LB, Turner J, Kelman Z, Beechem JM, O'Donnell M, Goodman MF. Dynamics of loading the beta sliding clamp of DNA polymerase III onto DNA. The Journal of Biological Chemistry. 271: 30699-708. PMID 8940047 DOI: 10.1074/Jbc.271.48.30699 |
0.371 |
|
| 1996 |
Goodman M, Chen XH, Darwish D. Are U.S. lower normal B12 limits too low? Journal of the American Geriatrics Society. 44: 1274-5. PMID 8856015 |
0.307 |
|
| 1996 |
Sibghat-Ullah, Gallinari P, Xu YZ, Goodman MF, Bloom LB, Jiricny J, Day RS. Base analog and neighboring base effects on substrate specificity of recombinant human G:T mismatch-specific thymine DNA-glycosylase. Biochemistry. 35: 12926-32. PMID 8841138 DOI: 10.1021/bi961022u |
0.317 |
|
| 1996 |
Paz-Elizur T, Takeshita M, Goodman M, O'Donnell M, Livneh Z. Mechanism of translesion DNA synthesis by DNA polymerase II. Comparison to DNA polymerases I and III core Journal of Biological Chemistry. 271: 24662-24669. PMID 8798733 DOI: 10.1074/Jbc.271.40.24662 |
0.522 |
|
| 1996 |
Fagan PA, Fàbrega C, Eritja R, Goodman MF, Wemmer DE. NMR study of the conformation of the 2-aminopurine:cytosine mismatch in DNA. Biochemistry. 35: 4026-33. PMID 8672436 DOI: 10.1021/Bi952657G |
0.385 |
|
| 1996 |
Petruska J, Arnheim N, Goodman MF. Stability of intrastrand hairpin structures formed by the CAG/CTG class of DNA triplet repeats associated with neurological diseases Nucleic Acids Research. 24: 1992-1998. PMID 8668527 DOI: 10.1093/Nar/24.11.1992 |
0.355 |
|
| 1996 |
Tomer G, Cohen-Fix O, O'Donnell M, Goodman M, Livneh Z. Reconstitution of repair-gap UV mutagenesis with purified proteins from Escherichia coli: A role for DNA polymerases III and II Proceedings of the National Academy of Sciences of the United States of America. 93: 1376-1380. PMID 8643639 DOI: 10.1073/Pnas.93.4.1376 |
0.522 |
|
| 1996 |
Bruck I, Woodgate R, McEuntee K, Goodman MF. Purification of a soluble UmuD'C complex from Escherichia coli: Cooperative binding of UmuD'C to single-stranded DNA Journal of Biological Chemistry. 271: 10767-10774. PMID 8631887 DOI: 10.1074/Jbc.271.18.10767 |
0.395 |
|
| 1996 |
Blair MM, Mashhoon N, Muchmore CRA, Goodman MF, Anderson WF. DNA polymerase fidelity: a structural analysis Acta Crystallographica Section a Foundations of Crystallography. 52: C154-C154. DOI: 10.1107/S0108767396093063 |
0.388 |
|
| 1996 |
Muchmore CRA, Blair MM, Shuvalova L, Goodman MF, Anderson WF. DNA polymerase II fromEscherichia coli Acta Crystallographica Section a Foundations of Crystallography. 52: C158-C158. DOI: 10.1107/S0108767396092938 |
0.356 |
|
| 1995 |
Cai H, Yu H, McEntee K, Goodman MF. Purification and properties of DNA polymerase II from Escherichia coli Methods in Enzymology. 262: 13-21. PMID 8594343 DOI: 10.1016/0076-6879(95)62004-4 |
0.392 |
|
| 1995 |
Creighton S, Goodman MF. Gel kinetic analysis of DNA polymerase fidelity in the presence of proofreading using bacteriophage T4 DNA polymerase Journal of Biological Chemistry. 270: 4759-4774. PMID 7876249 DOI: 10.1074/jbc.270.9.4759 |
0.359 |
|
| 1995 |
Cai H, Yu H, McEntee K, Kunkel TA, Goodman MF. Purification and properties of wild-type and exonuclease-deficient DNA polymerase II from Escherichia coli. The Journal of Biological Chemistry. 270: 15327-35. PMID 7797520 DOI: 10.1074/Jbc.270.25.15327 |
0.305 |
|
| 1994 |
Bloom LB, Otto MR, Eritja R, Reha-Krantz LJ, Goodman MF, Beechem JM. Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3'-exonuclease activity of bacteriophage T4 DNA polymerase. Biochemistry. 33: 7576-86. PMID 8011623 DOI: 10.1021/Bi00190A010 |
0.313 |
|
| 1993 |
Goodman MF, Creighton S, Bloom LB, Petruska J, Kunkel TA. Biochemical basis of DNA replication fidelity Critical Reviews in Biochemistry and Molecular Biology. 28: 83-126. PMID 8485987 DOI: 10.3109/10409239309086792 |
0.466 |
|
| 1993 |
Kow YW, Faundez G, Hays S, Bonner CA, Goodman MF, Wallace SS. Absence of a role for DNA polymerase II in SOS-induced translesion bypass of phi X174. Journal of Bacteriology. 175: 561-4. PMID 8419305 DOI: 10.1128/jb.175.2.561-564.1993 |
0.425 |
|
| 1992 |
Rajagopalan M, Lu C, Woodgate R, O'Donnell M, Goodman MF, Echols H. Activity of the purified mutagenesis proteins UmuC, UmuD', and RecA in replicative bypass of an abasic DNA lesion by DNA polymerase III. Proceedings of the National Academy of Sciences of the United States of America. 89: 10777-81. PMID 1438275 DOI: 10.1073/Pnas.89.22.10777 |
0.408 |
|
| 1992 |
Huang Mm, Arnheim N, Goodman MF. Extension of base mispairs by Taq DNA polymerase: Implications for single nucleotide discrimination in PCR Nucleic Acids Research. 20: 4567-4573. PMID 1408758 DOI: 10.1093/Nar/20.17.4567 |
0.367 |
|
| 1992 |
Shen Jc, Creighton S, Jones PA, Goodman MF. A comparison of the fidelity of copying 5-methylcytosine and cytosine at a difined DNA template site Nucleic Acids Research. 20: 5119-5125. PMID 1383939 DOI: 10.1093/Nar/20.19.5119 |
0.346 |
|
| 1991 |
Echols H, Goodman MF. Fidelity mechanisms in DNA replication. Annual Review of Biochemistry. 60: 477-511. PMID 1883202 DOI: 10.1146/Annurev.Bi.60.070191.002401 |
0.389 |
|
| 1990 |
Bonner CA, Hays S, McEntee K, Goodman MF. DNA polymerase II is encoded by the DNA damage-inducible dinA gene of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 87: 7663-7. PMID 2217198 DOI: 10.1073/Pnas.87.19.7663 |
0.392 |
|
| 1990 |
Echols H, Goodman MF. Mutation induced by DNA damage: a many protein affair Mutation Research-Dna Repair. 236: 301-311. PMID 2169028 DOI: 10.1016/0921-8777(90)90013-U |
0.399 |
|
| 1988 |
Petruska J, Goodman MF, Boosalis MS, Sowers LC, Cheong C, Tinoco I. Comparison between DNA melting thermodynamics and DNA polymerase fidelity Proceedings of the National Academy of Sciences of the United States of America. 85: 6252-6256. PMID 3413095 DOI: 10.1073/Pnas.85.17.6252 |
0.384 |
|
| 1988 |
Goodman MF. DNA replication fidelity: kinetics and thermodynamics Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 200: 11-20. PMID 3393157 DOI: 10.1016/0027-5107(88)90067-X |
0.34 |
|
| 1988 |
Sloane DL, Goodman MF, Echols H. The fidelity of base selection by the polymerase subunit of DNA polymerase III holoenzyme Nucleic Acids Research. 16: 6465-6475. PMID 3041378 DOI: 10.1093/Nar/16.14.6465 |
0.401 |
|
| 1987 |
Fazakerley GV, Sowers LC, Eritja R, Kaplan BE, Goodman MF. Structural and dynamic properties of a bromouracil-adenine base pair in DNA studied by proton NMR. Journal of Biomolecular Structure & Dynamics. 5: 639-50. PMID 3271487 DOI: 10.1080/07391102.1987.10506417 |
0.319 |
|
| 1987 |
Hardy TA, Baker DJ, Newman EM, Sowers LC, Goodman MF, Smith SS. Size of the directing moiety at carbon 5 of cytosine and the activity of human DNA(cytosine-5)methyltransferase Biochemical and Biophysical Research Communications. 145: 146-152. PMID 3036116 DOI: 10.1016/0006-291X(87)91299-X |
0.372 |
|
| 1986 |
Eritja R, Horowitz DM, Walker PA, Ziehler-Martin JP, Boosalis MS, Goodman MF, Itakura K, Kaplan BE. Synthesis and properties of oligonucleotides containing 2'-deoxynebularine and 2'-deoxyxanthosine. Nucleic Acids Research. 14: 8135-53. PMID 3095793 DOI: 10.1093/Nar/14.20.8135 |
0.325 |
|
| 1985 |
Lasken RS, Goodman MF. A fidelity assay using 'dideoxy' DNA sequencing: A measurement of sequence dependence and frequency of forming 5-bromouracil.guanine base mispairs Proceedings of the National Academy of Sciences of the United States of America. 82: 1301-1305. PMID 3856263 DOI: 10.1073/pnas.82.5.1301 |
0.324 |
|
| 1982 |
Watanabe SM, Goodman MF. Kinetic measurement of 2-aminopurine·cytosine and 2-aminopurine·thymine base pairs as a test of DNA polymerase fidelity mechanisms Proceedings of the National Academy of Sciences of the United States of America. 79: 6429-6433. PMID 6959128 DOI: 10.1073/pnas.79.21.6429 |
0.35 |
|
| 1981 |
Watanabe SM, Goodman MF. On the molecular basis of transition mutations: frequencies of forming 2-aminopurine.cytosine and adenine.cytosine base mispairs in vitro Proceedings of the National Academy of Sciences of the United States of America. 78: 2864-2868. PMID 6942407 DOI: 10.1073/pnas.78.5.2864 |
0.315 |
|
| 1977 |
Goodman MF, Hopkins R, Gore WC. 2-Aminopurine-induced mutagenesis in T4 bacteriophage: A model relating mutation frequency to 2-aminopurine incorporation in DNA Proceedings of the National Academy of Sciences of the United States of America. 74: 4806-4810. PMID 270713 DOI: 10.1073/pnas.74.11.4806 |
0.311 |
|
| 1974 |
Bessman MJ, Muzyczka N, Goodman MF, Schnaar RL. Studies on the biochemical basis of spontaneous mutation. II. The incorporation of a base and its analogue into DNA by wild-type, mutator and antimutator DNA polymerases Journal of Molecular Biology. 88: 409-421. PMID 4616089 DOI: 10.1016/0022-2836(74)90491-4 |
0.409 |
|
| 1974 |
Goodman MF, Bessman MJ, Bachur NR. Adriamycin and daunorubicin inhibition of mutant T4 DNA polymerases Proceedings of the National Academy of Sciences of the United States of America. 71: 1193-1196. PMID 4524632 DOI: 10.1073/Pnas.71.4.1193 |
0.386 |
|
| 1974 |
Goodman MF, Gore WC, Muzyczka N, Bessman MJ. Studies on the biochemical basis of spontaneous mutation. III. Rate model for DNA polymerase-effected nucleotide misincorporation Journal of Molecular Biology. 88: 243-235. PMID 4452997 DOI: 10.1016/0022-2836(74)90492-6 |
0.328 |
|
| Show low-probability matches. |