David J. Clark - Publications

Affiliations: 
Boston University, Boston, MA, United States 
Area:
neuromuscular physiology, human performance

131 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Anton SD, Cruz-Almeida Y, Singh A, Alpert J, Bensadon B, Cabrera M, Clark DJ, Ebner NC, Esser KA, Fillingim RB, Goicolea SM, Han SM, Kallas H, Johnson A, Leeuwenburgh C, et al. Innovations in Geroscience to enhance mobility in older adults. Experimental Gerontology. 142: 111123. PMID 33191210 DOI: 10.1016/j.exger.2020.111123  0.36
2020 Chatterjee SA, Seidler RD, Skinner JW, Lysne PE, Sumonthee C, Wu SS, Cohen RA, Rose DK, Woods AJ, Clark DJ. Obstacle Negotiation in Older Adults: Prefrontal Activation Interpreted Through Conceptual Models of Brain Aging. Innovation in Aging. 4: igaa034. PMID 32995566 DOI: 10.1093/geroni/igaa034  0.48
2020 Clark DJ, Chatterjee SA, Skinner JW, Lysne PE, Sumonthee C, Wu SS, Cohen RA, Rose DK, Woods AJ. Combining Frontal Transcranial Direct Current Stimulation With Walking Rehabilitation to Enhance Mobility and Executive Function: A Pilot Clinical Trial. Neuromodulation : Journal of the International Neuromodulation Society. PMID 32808403 DOI: 10.1111/ner.13250  0.48
2020 Clark DJ, Manini TM, Ferris DP, Hass CJ, Brumback BA, Cruz-Almeida Y, Pahor M, Reuter-Lorenz PA, Seidler RD. Corrigendum: Multimodal Imaging of Brain Activity to Investigate Walking and Mobility Decline in Older Adults (Mind in Motion Study): Hypothesis, Theory, and Methods. Frontiers in Aging Neuroscience. 12: 63. PMID 32194394 DOI: 10.3389/fnagi.2020.00063  0.36
2019 Clark DJ, Manini TM, Ferris DP, Hass CJ, Brumback BA, Cruz-Almeida Y, Pahor M, Reuter-Lorenz PA, Seidler RD. Multimodal Imaging of Brain Activity to Investigate Walking and Mobility Decline in Older Adults (Mind in Motion Study): Hypothesis, Theory, and Methods. Frontiers in Aging Neuroscience. 11: 358. PMID 31969814 DOI: 10.3389/fnagi.2019.00358  0.36
2019 Chatterjee SA, Fox EJ, Daly JJ, Rose DK, Wu SS, Christou EA, Hawkins KA, Otzel DM, Butera KA, Skinner JW, Clark DJ. Interpreting Prefrontal Recruitment During Walking After Stroke: Influence of Individual Differences in Mobility and Cognitive Function. Frontiers in Human Neuroscience. 13: 194. PMID 31316360 DOI: 10.3389/fnhum.2019.00194  0.6
2019 Chatterjee SA, Rose DK, Porges EC, Otzel DM, Clark DJ. A Perspective on Objective Measurement of the Perceived Challenge of Walking. Frontiers in Human Neuroscience. 13: 161. PMID 31139069 DOI: 10.3389/fnhum.2019.00161  0.48
2019 Hawkins KA, Balasubramanian CK, Vistamehr A, Conroy C, Rose DK, Clark DJ, Fox EJ. Assessment of backward walking unmasks mobility impairments in post-stroke community ambulators. Topics in Stroke Rehabilitation. 1-7. PMID 31081491 DOI: 10.1080/10749357.2019.1609182  1
2018 Chatterjee SA, Daly JJ, Porges EC, Fox EJ, Rose DK, McGuirk TE, Otzel DM, Butera KA, Clark DJ. Mobility Function and Recovery After Stroke: Preliminary Insights From Sympathetic Nervous System Activity. Journal of Neurologic Physical Therapy : Jnpt. PMID 30138228 DOI: 10.1097/NPT.0000000000000238  0.6
2018 Gouelle A, Rennie L, Clark DJ, Mégrot F, Balasubramanian CK. Addressing limitations of the Gait Variability Index to enhance its applicability: The enhanced GVI (EGVI). Plos One. 13: e0198267. PMID 29856818 DOI: 10.1371/journal.pone.0198267  1
2018 Vistamehr A, Balasubramanian CK, Clark DJ, Neptune RR, Fox EJ. Dynamic balance during walking adaptability tasks in individuals post-stroke. Journal of Biomechanics. PMID 29724539 DOI: 10.1016/j.jbiomech.2018.04.029  1
2018 Hawkins KA, Fox EJ, Daly JJ, Rose DK, Christou EA, McGuirk TE, Otzel DM, Butera KA, Chatterjee SA, Clark DJ. Prefrontal over-activation during walking in people with mobility deficits: Interpretation and functional implications. Human Movement Science. 59: 46-55. PMID 29604488 DOI: 10.1016/j.humov.2018.03.010  0.6
2018 Rose DK, DeMark L, Fox EJ, Clark DJ, Wludyka P. A Backward Walking Training Program to Improve Balance and Mobility in Acute Stroke: A Pilot Randomized Controlled Trial. Journal of Neurologic Physical Therapy : Jnpt. 42: 12-21. PMID 29232308 DOI: 10.1097/NPT.0000000000000210  0.6
2017 Clark DJ, Chatterjee SA, McGuirk TE, Porges EC, Fox EJ, Balasubramanian CK. Sympathetic nervous system activity measured by skin conductance quantifies the challenge of walking adaptability tasks after stroke. Gait & Posture. 60: 148-153. PMID 29216598 DOI: 10.1016/j.gaitpost.2017.11.025  1
2017 Hawkins KA, Clark DJ, Balasubramanian CK, Fox EJ. Walking on uneven terrain in healthy adults and the implications for people after stroke. Neurorehabilitation. PMID 28946584 DOI: 10.3233/NRE-172154  1
2017 Lodha N, Chen YT, McGuirk TE, Fox EJ, Kautz SA, Christou EA, Clark DJ. EMG synchrony to assess impaired corticomotor control of locomotion after stroke. Journal of Electromyography and Kinesiology : Official Journal of the International Society of Electrophysiological Kinesiology. 37: 35-40. PMID 28888972 DOI: 10.1016/j.jelekin.2017.08.007  1
2015 Qiu H, Chereji R, Hu C, Cole HA, Rawal Y, Clark DJ, Hinnebusch AG. Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation. Genome Research. PMID 26602697 DOI: 10.1101/gr.196337.115  1
2015 Clark DJ, Neptune RR, Behrman AL, Kautz SA. A locomotor adaptability task promotes intense and task-appropriate output from the paretic leg during walking. Archives of Physical Medicine and Rehabilitation. PMID 26525528 DOI: 10.1016/j.apmr.2015.10.081  1
2015 Ocampo J, Clark DJ. A Positive Twist to the Centromeric Nucleosome. Cell Reports. 13: 645-6. PMID 26510160 DOI: 10.1016/j.celrep.2015.10.007  1
2015 Anton SD, Woods AJ, Ashizawa T, Barb D, Buford TW, Carter CS, Clark DJ, Cohen RA, Corbett DB, Cruz-Almeida Y, Dotson V, Ebner N, Efron PA, Fillingim RB, Foster TC, et al. Successful aging: Advancing the science of physical independence in older adults. Ageing Research Reviews. PMID 26462882 DOI: 10.1016/j.arr.2015.09.005  1
2015 Clark DJ, Leblanc BP. Analysis of DNA Supercoiling Induced by DNA-Protein Interactions. Methods in Molecular Biology (Clifton, N.J.). 1334: 161-72. PMID 26404149 DOI: 10.1007/978-1-4939-2877-4_10  1
2015 Li WW, Guo TZ, Shi X, Sun Y, Wei T, Clark DJ, Kingery WS. Substance P spinal signaling induces glial activation and nociceptive sensitization after fracture. Neuroscience. PMID 26386297 DOI: 10.1016/j.neuroscience.2015.09.036  1
2015 Sorond FA, Cruz-Almeida Y, Clark DJ, Viswanathan A, Scherzer CR, De Jager P, Csiszar A, Laurienti PJ, Hausdorff J, Chen WG, Ferrucci L, Rosano C, Studenski SA, Black SE, Lipsitz LA. Aging, the Central Nervous System, and Mobility in Older Adults: Neural Mechanisms of Mobility Impairment. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 26386013 DOI: 10.1093/gerona/glv130  1
2015 Clark DJ, Fondrie WE, Liao Z, Hanson PI, Fulton A, Mao L, Yang AJ. Redefining the breast cancer exosome proteome by tandem mass tag quantitative proteomics and multivariate cluster analysis. Analytical Chemistry. PMID 26378940 DOI: 10.1021/acs.analchem.5b02586  1
2015 Clark DJ. Automaticity of walking: functional significance, mechanisms, measurement and rehabilitation strategies. Frontiers in Human Neuroscience. 9: 246. PMID 25999838 DOI: 10.3389/fnhum.2015.00246  1
2015 Shi X, Guo TZ, Wei T, Li WW, Clark DJ, Kingery WS. Facilitated spinal neuropeptide signaling and upregulated inflammatory mediator expression contribute to post-fracture nociceptive sensitization. Pain. PMID 25932690 DOI: 10.1097/j.pain.0000000000000204  1
2015 Balasubramanian CK, Clark DJ, Gouelle A. Validity of the gait variability index in older adults: effect of aging and mobility impairments. Gait & Posture. 41: 941-6. PMID 25882115 DOI: 10.1016/j.gaitpost.2015.03.349  1
2015 Reid KF, Martin KI, Doros G, Clark DJ, Hau C, Patten C, Phillips EM, Frontera WR, Fielding RA. Comparative effects of light or heavy resistance power training for improving lower extremity power and physical performance in mobility-limited older adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 70: 374-80. PMID 25199912 DOI: 10.1093/gerona/glu156  1
2014 Cole HA, Ocampo J, Iben JR, Chereji RV, Clark DJ. Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases. Nucleic Acids Research. 42: 12512-22. PMID 25348398 DOI: 10.1093/nar/gku1013  1
2014 Balasubramanian CK, Clark DJ, Fox EJ. Walking adaptability after a stroke and its assessment in clinical settings. Stroke Research and Treatment. 2014: 591013. PMID 25254140 DOI: 10.1155/2014/591013  1
2014 Clark DJ, Rose DK, Ring SA, Porges EC. Utilization of central nervous system resources for preparation and performance of complex walking tasks in older adults. Frontiers in Aging Neuroscience. 6: 217. PMID 25202270 DOI: 10.3389/fnagi.2014.00217  1
2014 Clark DJ, Christou EA, Ring SA, Williamson JB, Doty L. Enhanced somatosensory feedback reduces prefrontal cortical activity during walking in older adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 69: 1422-8. PMID 25112494 DOI: 10.1093/gerona/glu125  1
2014 Ganguli D, Chereji RV, Iben JR, Cole HA, Clark DJ. RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast. Genome Research. 24: 1637-49. PMID 25015381 DOI: 10.1101/gr.177014.114  1
2014 Funk KE, Thomas SN, Schafer KN, Cooper GL, Liao Z, Clark DJ, Yang AJ, Kuret J. Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity. The Biochemical Journal. 462: 77-88. PMID 24869773 DOI: 10.1042/BJ20140372  1
2014 Cruz-Almeida Y, Black ML, Christou EA, Clark DJ. Site-specific differences in the association between plantar tactile perception and mobility function in older adults. Frontiers in Aging Neuroscience. 6: 68. PMID 24782765 DOI: 10.3389/fnagi.2014.00068  0.32
2014 Clark DJ, Reid KF, Patten C, Phillips EM, Ring SA, Wu SS, Fielding RA. Does quadriceps neuromuscular activation capability explain walking speed in older men and women? Experimental Gerontology. 55: 49-53. PMID 24703887 DOI: 10.1016/j.exger.2014.03.019  1
2014 Buford TW, Anton SD, Clark DJ, Higgins TJ, Cooke MB. Optimizing the benefits of exercise on physical function in older adults. Pm & R : the Journal of Injury, Function, and Rehabilitation. 6: 528-43. PMID 24361365 DOI: 10.1016/j.pmrj.2013.11.009  1
2014 Chang HW, Kulaeva OI, Shaytan AK, Kibanov M, Kuznedelov K, Severinov KV, Kirpichnikov MP, Clark DJ, Studitsky VM. Analysis of the mechanism of nucleosome survival during transcription. Nucleic Acids Research. 42: 1619-27. PMID 24234452 DOI: 10.1093/nar/gkt1120  1
2014 Reid KF, Pasha E, Doros G, Clark DJ, Patten C, Phillips EM, Frontera WR, Fielding RA. Longitudinal decline of lower extremity muscle power in healthy and mobility-limited older adults: influence of muscle mass, strength, composition, neuromuscular activation and single fiber contractile properties. European Journal of Applied Physiology. 114: 29-39. PMID 24122149 DOI: 10.1007/s00421-013-2728-2  1
2014 Mei Y, Zhang P, Zuo H, Clark D, Xia R, Li J, Liu Z, Mao L. Ebp1 activates podoplanin expression and contributes to oral tumorigenesis. Oncogene. 33: 3839-50. PMID 23975429 DOI: 10.1038/onc.2013.354  1
2013 Yan M, Yang X, Wang L, Clark D, Zuo H, Ye D, Chen W, Zhang P. Plasma membrane proteomics of tumor spheres identify CD166 as a novel marker for cancer stem-like cells in head and neck squamous cell carcinoma. Molecular & Cellular Proteomics : McP. 12: 3271-84. PMID 23903875 DOI: 10.1074/mcp.M112.025460  1
2013 Nagarajavel V, Iben JR, Howard BH, Maraia RJ, Clark DJ. Global 'bootprinting' reveals the elastic architecture of the yeast TFIIIB-TFIIIC transcription complex in vivo. Nucleic Acids Research. 41: 8135-43. PMID 23856458 DOI: 10.1093/nar/gkt611  1
2013 Pieper R, Zhang Q, Clark DJ, Parmar PP, Alami H, Suh MJ, Kuntumalla S, Braisted JC, Huang ST, Tzipori S. Proteomic View of Interactions of Shiga Toxin-Producing Escherichia coli with the Intestinal Environment in Gnotobiotic Piglets. Plos One. 8: e66462. PMID 23840478 DOI: 10.1371/journal.pone.0066462  1
2013 Fox EJ, Tester NJ, Kautz SA, Howland DR, Clark DJ, Garvan C, Behrman AL. Modular control of varied locomotor tasks in children with incomplete spinal cord injuries. Journal of Neurophysiology. 110: 1415-25. PMID 23761702 DOI: 10.1152/jn.00676.2012  1
2013 Clark DJ, Kautz SA, Bauer AR, Chen YT, Christou EA. Synchronous EMG activity in the piper frequency band reveals the corticospinal demand of walking tasks. Annals of Biomedical Engineering. 41: 1778-86. PMID 23740367 DOI: 10.1007/s10439-013-0832-4  1
2013 Clark DJ, Pojednic RM, Reid KF, Patten C, Pasha EP, Phillips EM, Fielding RA. Longitudinal decline of neuromuscular activation and power in healthy older adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 68: 1419-25. PMID 23676250 DOI: 10.1093/gerona/glt036  1
2013 Mei Y, Clark D, Mao L. Novel dimensions of piRNAs in cancer. Cancer Letters. 336: 46-52. PMID 23603435 DOI: 10.1016/j.canlet.2013.04.008  1
2013 Clark DJ, Catusse J, Stacey A, Borrow P, Gompels UA. Activation of CCR2+ human proinflammatory monocytes by human herpesvirus-6B chemokine N-terminal peptide. The Journal of General Virology. 94: 1624-35. PMID 23535574 DOI: 10.1099/vir.0.050153-0  1
2013 Routson RL, Clark DJ, Bowden MG, Kautz SA, Neptune RR. The influence of locomotor rehabilitation on module quality and post-stroke hemiparetic walking performance. Gait & Posture. 38: 511-7. PMID 23489952 DOI: 10.1016/j.gaitpost.2013.01.020  1
2013 Clark DJ, Manini TM, Fielding RA, Patten C. Neuromuscular determinants of maximum walking speed in well-functioning older adults. Experimental Gerontology. 48: 358-63. PMID 23376102 DOI: 10.1016/j.exger.2013.01.010  1
2013 Clark DJ, Patten C. Eccentric versus concentric resistance training to enhance neuromuscular activation and walking speed following stroke. Neurorehabilitation and Neural Repair. 27: 335-44. PMID 23292848 DOI: 10.1177/1545968312469833  1
2013 Dodd JS, Clark D, Muir R, Korpis C, Openshaw PJ. Endogenous IL-21 regulates pathogenic mucosal CD4 T-cell responses during enhanced RSV disease in mice. Mucosal Immunology. 6: 704-17. PMID 23168836 DOI: 10.1038/mi.2012.108  1
2012 Zou Y, Corniola R, Leu D, Khan A, Sahbaie P, Chakraborti A, Clark DJ, Fike JR, Huang TT. Extracellular superoxide dismutase is important for hippocampal neurogenesis and preservation of cognitive functions after irradiation. Proceedings of the National Academy of Sciences of the United States of America. 109: 21522-7. PMID 23236175 DOI: 10.1073/pnas.1216913110  1
2012 Guo TZ, Wei T, Shi X, Li WW, Hou S, Wang L, Tsujikawa K, Rice KC, Cheng K, Clark DJ, Kingery WS. Neuropeptide deficient mice have attenuated nociceptive, vascular, and inflammatory changes in a tibia fracture model of complex regional pain syndrome. Molecular Pain. 8: 85. PMID 23191958 DOI: 10.1186/1744-8069-8-85  1
2012 Carvalho B, Clark DJ, Yeomans D, Angst MS. Collecting and measuring wound exudate biochemical mediators in surgical wounds. Journal of Visualized Experiments : Jove. PMID 23117346 DOI: 10.3791/50133  1
2012 Cui F, Cole HA, Clark DJ, Zhurkin VB. Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing. Nucleic Acids Research. 40: 10753-64. PMID 23012262 DOI: 10.1093/nar/gks870  1
2012 Cole HA, Howard BH, Clark DJ. Genome-wide mapping of nucleosomes in yeast using paired-end sequencing. Methods in Enzymology. 513: 145-68. PMID 22929768 DOI: 10.1016/B978-0-12-391938-0.00006-9  1
2012 Clark D, Mao L. Cancer biomarker discovery: Lectin-based strategies targeting glycoproteins Disease Markers. 33: 1-10. PMID 22710864 DOI: 10.3233/DMA-2012-0904  1
2012 Pojednic RM, Clark DJ, Patten C, Reid K, Phillips EM, Fielding RA. The specific contributions of force and velocity to muscle power in older adults. Experimental Gerontology. 47: 608-13. PMID 22626972 DOI: 10.1016/j.exger.2012.05.010  1
2012 Eriksson PR, Ganguli D, Nagarajavel V, Clark DJ. Regulation of histone gene expression in budding yeast. Genetics. 191: 7-20. PMID 22555441 DOI: 10.1534/genetics.112.140145  1
2012 Chu LF, Cun T, Ngai LK, Kim JE, Zamora AK, Young CA, Angst MS, Clark DJ. Modulation of remifentanil-induced postinfusion hyperalgesia by the β-blocker propranolol in humans. Pain. 153: 974-81. PMID 22365565 DOI: 10.1016/j.pain.2012.01.014  1
2012 Cole HA, Nagarajavel V, Clark DJ. Perfect and imperfect nucleosome positioning in yeast. Biochimica Et Biophysica Acta. 1819: 639-43. PMID 22306662 DOI: 10.1016/j.bbagrm.2012.01.008  1
2012 Fang H, Clark DJ, Hayes JJ. DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain. Nucleic Acids Research. 40: 1475-84. PMID 22021384 DOI: 10.1093/nar/gkr866  1
2012 Reid KF, Doros G, Clark DJ, Patten C, Carabello RJ, Cloutier GJ, Phillips EM, Krivickas LS, Frontera WR, Fielding RA. Muscle power failure in mobility-limited older adults: preserved single fiber function despite lower whole muscle size, quality and rate of neuromuscular activation. European Journal of Applied Physiology. 112: 2289-301. PMID 22005960 DOI: 10.1007/s00421-011-2200-0  1
2012 Clark DJ, Fielding RA. Neuromuscular contributions to age-related weakness. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 67: 41-7. PMID 21415261 DOI: 10.1093/gerona/glr041  1
2011 Pieper R, Zhang Q, Clark DJ, Huang ST, Suh MJ, Braisted JC, Payne SH, Fleischmann RD, Peterson SN, Tzipori S. Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies. Plos One. 6: e26554. PMID 22087229 DOI: 10.1371/journal.pone.0026554  1
2011 Darcy DC, Lewis ET, Ormond KE, Clark DJ, Trafton JA. Practical considerations to guide development of access controls and decision support for genetic information in electronic medical records. Bmc Health Services Research. 11: 294. PMID 22047175 DOI: 10.1186/1472-6963-11-294  1
2011 Cole HA, Howard BH, Clark DJ. Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes. Nucleic Acids Research. 39: 9521-35. PMID 21880600 DOI: 10.1093/nar/gkr643  1
2011 Cole HA, Howard BH, Clark DJ. The centromeric nucleosome of budding yeast is perfectly positioned and covers the entire centromere. Proceedings of the National Academy of Sciences of the United States of America. 108: 12687-92. PMID 21768332 DOI: 10.1073/pnas.1104978108  1
2011 Jang JH, Liang D, Kido K, Sun Y, Clark DJ, Brennan TJ. Increased local concentration of complement C5a contributes to incisional pain in mice. Journal of Neuroinflammation. 8: 80. PMID 21736743 DOI: 10.1186/1742-2094-8-80  1
2011 Kautz SA, Bowden MG, Clark DJ, Neptune RR. Comparison of motor control deficits during treadmill and overground walking poststroke. Neurorehabilitation and Neural Repair. 25: 756-65. PMID 21636831 DOI: 10.1177/1545968311407515  1
2011 Gaykalova DA, Nagarajavel V, Bondarenko VA, Bartholomew B, Clark DJ, Studitsky VM. A polar barrier to transcription can be circumvented by remodeler-induced nucleosome translocation. Nucleic Acids Research. 39: 3520-8. PMID 21245049 DOI: 10.1093/nar/gkq1273  1
2011 Eriksson PR, Ganguli D, Clark DJ. Spt10 and Swi4 control the timing of histone H2A/H2B gene activation in budding yeast. Molecular and Cellular Biology. 31: 557-72. PMID 21115727 DOI: 10.1128/MCB.00909-10  1
2011 Clark DJ, Patten C, Reid KF, Carabello RJ, Phillips EM, Fielding RA. Muscle performance and physical function are associated with voluntary rate of neuromuscular activation in older adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 66: 115-21. PMID 20829294 DOI: 10.1093/gerona/glq153  1
2011 DeLorey TM, Sahbaie P, Hashemi E, Li WW, Salehi A, Clark DJ. Somatosensory and sensorimotor consequences associated with the heterozygous disruption of the autism candidate gene, Gabrb3. Behavioural Brain Research. 216: 36-45. PMID 20699105 DOI: 10.1016/j.bbr.2010.06.032  1
2010 Catusse J, Leick M, Groch M, Clark DJ, Buchner MV, Zirlik K, Burger M. Role of the atypical chemoattractant receptor CRAM in regulating CCL19 induced CCR7 responses in B-cell chronic lymphocytic leukemia. Molecular Cancer. 9: 297. PMID 21092185 DOI: 10.1186/1476-4598-9-297  1
2010 Carvalho B, Clark DJ, Yeomans DC, Angst MS. Continuous subcutaneous instillation of bupivacaine compared to saline reduces interleukin 10 and increases substance P in surgical wounds after cesarean delivery. Anesthesia and Analgesia. 111: 1452-9. PMID 20861424 DOI: 10.1213/ANE.0b013e3181f579de  1
2010 Wu PC, Lang C, Hasson NK, Linder SH, Clark DJ. Opioid use in young veterans. Journal of Opioid Management. 6: 133-9. PMID 20481178 DOI: 10.5055/jom.2010.0013  1
2010 Trafton JA, Martins SB, Michel MC, Wang D, Tu SW, Clark DJ, Elliott J, Vucic B, Balt S, Clark ME, Sintek CD, Rosenberg J, Daniels D, Goldstein MK. Designing an automated clinical decision support system to match clinical practice guidelines for opioid therapy for chronic pain. Implementation Science : Is. 5: 26. PMID 20385018 DOI: 10.1186/1748-5908-5-26  1
2010 Clark DJ. Nucleosome positioning, nucleosome spacing and the nucleosome code. Journal of Biomolecular Structure & Dynamics. 27: 781-93. PMID 20232933 DOI: 10.1080/073911010010524945  1
2010 Suh MJ, Clark DJ, Parmer PP, Fleischmann RD, Peterson SN, Pieper R. Using chemical derivatization and mass spectrometric analysis to characterize the post-translationally modified Staphylococcus aureus surface protein G. Biochimica Et Biophysica Acta. 1804: 1394-404. PMID 20176147 DOI: 10.1016/j.bbapap.2010.02.006  1
2010 Clark DJ, Patten C, Reid KF, Carabello RJ, Phillips EM, Fielding RA. Impaired voluntary neuromuscular activation limits muscle power in mobility-limited older adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 65: 495-502. PMID 20156882 DOI: 10.1093/gerona/glq012  1
2010 Pieper R, Huang ST, Parmar PP, Clark DJ, Alami H, Fleischmann RD, Perry RD, Peterson SN. Proteomic analysis of iron acquisition, metabolic and regulatory responses of Yersinia pestis to iron starvation. Bmc Microbiology. 10: 30. PMID 20113483 DOI: 10.1186/1471-2180-10-30  1
2010 Clark DJ, Ting LH, Zajac FE, Neptune RR, Kautz SA. Merging of healthy motor modules predicts reduced locomotor performance and muscle coordination complexity post-stroke. Journal of Neurophysiology. 103: 844-57. PMID 20007501 DOI: 10.1152/jn.00825.2009  1
2010 Wang L, Shi X, Zhao R, Halloran BP, Clark DJ, Jacobs CR, Kingery WS. Calcitonin-gene-related peptide stimulates stromal cell osteogenic differentiation and inhibits RANKL induced NF-kappaB activation, osteoclastogenesis and bone resorption. Bone. 46: 1369-79. PMID 19962460 DOI: 10.1016/j.bone.2009.11.029  1
2010 Carabello RJ, Reid KF, Clark DJ, Phillips EM, Fielding RA. Lower extremity strength and power asymmetry assessment in healthy and mobility-limited populations: reliability and association with physical functioning. Aging Clinical and Experimental Research. 22: 324-9. PMID 19940556 DOI: 10.3275/6676  1
2010 McGowan CP, Neptune RR, Clark DJ, Kautz SA. Modular control of human walking: Adaptations to altered mechanical demands. Journal of Biomechanics. 43: 412-9. PMID 19879583 DOI: 10.1016/j.jbiomech.2009.10.009  1
2010 Bowden MG, Clark DJ, Kautz SA. Evaluation of abnormal synergy patterns poststroke: relationship of the Fugl-Meyer Assessment to hemiparetic locomotion. Neurorehabilitation and Neural Repair. 24: 328-37. PMID 19794132 DOI: 10.1177/1545968309343215  1
2009 Pieper R, Zhang Q, Parmar PP, Huang ST, Clark DJ, Alami H, Donohue-Rolfe A, Fleischmann RD, Peterson SN, Tzipori S. The Shigella dysenteriae serotype 1 proteome, profiled in the host intestinal environment, reveals major metabolic modifications and increased expression of invasive proteins. Proteomics. 9: 5029-45. PMID 19813213 DOI: 10.1002/pmic.200900196  1
2009 Catusse J, Clark DJ, Gompels UA. CCR5 signalling, but not DARC or D6 regulatory, chemokine receptors are targeted by herpesvirus U83A chemokine which delays receptor internalisation via diversion to a caveolin-linked pathway. Journal of Inflammation (London, England). 6: 22. PMID 19643012 DOI: 10.1186/1476-9255-6-22  1
2009 Kuntumalla S, Braisted JC, Huang ST, Parmar PP, Clark DJ, Alami H, Zhang Q, Donohue-Rolfe A, Tzipori S, Fleischmann RD, Peterson SN, Pieper R. Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome. Proteome Science. 7: 22. PMID 19563668 DOI: 10.1186/1477-5956-7-22  1
2009 Kim H, Clark D, Dionne RA. Genetic contributions to clinical pain and analgesia: avoiding pitfalls in genetic research. The Journal of Pain : Official Journal of the American Pain Society. 10: 663-93. PMID 19559388 DOI: 10.1016/j.jpain.2009.04.001  1
2009 LaCroix-Fralish ML, Mo G, Smith SB, Sotocinal SG, Ritchie J, Austin JS, Melmed K, Schorscher-Petcu A, Laferriere AC, Lee TH, Romanovsky D, Liao G, Behlke MA, Clark DJ, Peltz G, et al. The beta3 subunit of the Na+,K+-ATPase mediates variable nociceptive sensitivity in the formalin test. Pain. 144: 294-302. PMID 19464798 DOI: 10.1016/j.pain.2009.04.028  1
2009 Wei T, Li WW, Guo TZ, Zhao R, Wang L, Clark DJ, Oaklander AL, Schmelz M, Kingery WS. Post-junctional facilitation of Substance P signaling in a tibia fracture rat model of complex regional pain syndrome type I. Pain. 144: 278-86. PMID 19464118 DOI: 10.1016/j.pain.2009.04.020  1
2009 Neptune RR, Clark DJ, Kautz SA. Modular control of human walking: a simulation study. Journal of Biomechanics. 42: 1282-7. PMID 19394023 DOI: 10.1016/j.jbiomech.2009.03.009  1
2009 Wang L, Zhao R, Shi X, Wei T, Halloran BP, Clark DJ, Jacobs CR, Kingery WS. Substance P stimulates bone marrow stromal cell osteogenic activity, osteoclast differentiation, and resorption activity in vitro. Bone. 45: 309-20. PMID 19379851 DOI: 10.1016/j.bone.2009.04.203  1
2009 Clark DJ, Leblanc B. Analysis of DNA supercoiling induced by DNA-protein interactions. Methods in Molecular Biology (Clifton, N.J.). 543: 523-35. PMID 19378184 DOI: 10.1007/978-1-60327-015-1_30  1
2009 Bates M, Monze M, Bima H, Kapambwe M, Clark D, Kasolo FC, Gompels UA. Predominant human herpesvirus 6 variant A infant infections in an HIV-1 endemic region of Sub-Saharan Africa. Journal of Medical Virology. 81: 779-89. PMID 19319952 DOI: 10.1002/jmv.21455  1
2009 Pieper R, Huang ST, Clark DJ, Robinson JM, Alami H, Parmar PP, Suh MJ, Kuntumalla S, Bunai CL, Perry RD, Fleischmann RD, Peterson SN. Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes. Proteome Science. 7: 5. PMID 19228400 DOI: 10.1186/1477-5956-7-5  1
2009 Pieper R, Huang ST, Robinson JM, Clark DJ, Alami H, Parmar PP, Perry RD, Fleischmann RD, Peterson SN. Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis. Microbiology (Reading, England). 155: 498-512. PMID 19202098 DOI: 10.1099/mic.0.022160-0  1
2009 Wei T, Sabsovich I, Guo TZ, Shi X, Zhao R, Li W, Geis C, Sommer C, Kingery WS, Clark DJ. Pentoxifylline attenuates nociceptive sensitization and cytokine expression in a tibia fracture rat model of complex regional pain syndrome. European Journal of Pain (London, England). 13: 253-62. PMID 18554967 DOI: 10.1016/j.ejpain.2008.04.014  1
2009 Neptune RR, Clark DJ, Kautz SA. Modular control of human walking: A modeling and simulation study Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 1211-1212. DOI: 10.1115/SBC2009-204166  1
2008 Carvalho B, Clark DJ, Yeomans D, Angst MS. Collecting and measuring nociceptive and inflammatory mediators in surgical wounds. Journal of Visualized Experiments : Jove. PMID 19078937 DOI: 10.3791/962  1
2008 Chu LF, Angst MS, Clark D. Opioid-induced hyperalgesia in humans: Molecular mechanisms and clinical considerations Clinical Journal of Pain. 24: 479-496. PMID 18574358 DOI: 10.1097/AJP.0b013e31816b2f43  1
2008 Liao G, Zhang X, Clark DJ, Peltz G. A genomic "roadmap" to "better" drugs. Drug Metabolism Reviews. 40: 225-39. PMID 18464044 DOI: 10.1080/03602530801952815  1
2008 Carvalho B, Clark DJ, Angst MS. Local and systemic release of cytokines, nerve growth factor, prostaglandin E2, and substance P in incisional wounds and serum following cesarean delivery. The Journal of Pain : Official Journal of the American Pain Society. 9: 650-7. PMID 18394968 DOI: 10.1016/j.jpain.2008.02.004  1
2008 Pieper R, Huang ST, Clark DJ, Robinson JM, Parmar PP, Alami H, Bunai CL, Perry RD, Fleischmann RD, Peterson SN. Characterizing the dynamic nature of the Yersinia pestis periplasmic proteome in response to nutrient exhaustion and temperature change. Proteomics. 8: 1442-58. PMID 18383009 DOI: 10.1002/pmic.200700923  1
2008 Sabsovich I, Guo TZ, Wei T, Zhao R, Li X, Clark DJ, Geis C, Sommer C, Kingery WS. TNF signaling contributes to the development of nociceptive sensitization in a tibia fracture model of complex regional pain syndrome type I. Pain. 137: 507-19. PMID 18035493 DOI: 10.1016/j.pain.2007.10.013  1
2007 Elliott J, Chapman J, Clark DJ. Videoconferencing for a veteran's pain management follow-up clinic. Pain Management Nursing : Official Journal of the American Society of Pain Management Nurses. 8: 35-46. PMID 17336868 DOI: 10.1016/j.pmn.2006.12.005  1
2007 Mendiratta G, Eriksson PR, Clark DJ. Cooperative binding of the yeast Spt10p activator to the histone upstream activating sequences is mediated through an N-terminal dimerization domain. Nucleic Acids Research. 35: 812-21. PMID 17202156 DOI: 10.1093/nar/gkl1079  1
2007 Lew HL, Clark DJ, Walker WC. Re: Characteristics and treatment of headache after traumatic brain injury: Response letter [8] American Journal of Physical Medicine and Rehabilitation. 86: 1035. DOI: 10.1097/01.phm.0000297446.70510.d4  1
2007 Eriksson PR, McLaughlin N, Mendiratta G, Clark DJ. The yeast SPT10 gene encodes a sequence-specific DNA-binding histone acetyltransferase responsible for histone gene regulation Chemtracts. 19: 87-99.  1
2006 Liang DY, Liao G, Lighthall GK, Peltz G, Clark DJ. Genetic variants of the P-glycoprotein gene Abcb1b modulate opioid-induced hyperalgesia, tolerance and dependence. Pharmacogenetics and Genomics. 16: 825-35. PMID 17047491 DOI: 10.1097/01.fpc.0000236321.94271.f8  1
2006 Kim Y, McLaughlin N, Lindstrom K, Tsukiyama T, Clark DJ. Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent mobilization of nucleosomes over the entire gene. Molecular and Cellular Biology. 26: 8607-22. PMID 16982689 DOI: 10.1128/MCB.00678-06  1
2006 Clark DJ, Shen CH. Mapping histone modifications by nucleosome immunoprecipitation. Methods in Enzymology. 410: 416-30. PMID 16938564 DOI: 10.1016/S0076-6879(06)10021-X  1
2006 Clark DJ, Condliffe EG, Patten C. Activation impairment alters muscle torque-velocity in the knee extensors of persons with post-stroke hemiparesis. Clinical Neurophysiology : Official Journal of the International Federation of Clinical Neurophysiology. 117: 2328-37. PMID 16926111 DOI: 10.1016/j.clinph.2006.07.131  1
2006 Tong W, Kulaeva OI, Clark DJ, Lutter LC. Topological analysis of plasmid chromatin from yeast and mammalian cells. Journal of Molecular Biology. 361: 813-22. PMID 16890953 DOI: 10.1016/j.jmb.2006.07.015  1
2006 Pieper R, Gatlin-Bunai CL, Mongodin EF, Parmar PP, Huang ST, Clark DJ, Fleischmann RD, Gill SR, Peterson SN. Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin. Proteomics. 6: 4246-58. PMID 16826566 DOI: 10.1002/pmic.200500764  1
2006 Lew HL, Lin PH, Fuh JL, Wang SJ, Clark DJ, Walker WC. Characteristics and treatment of headache after traumatic brain injury: a focused review. American Journal of Physical Medicine & Rehabilitation / Association of Academic Physiatrists. 85: 619-27. PMID 16788394 DOI: 10.1097/01.phm.0000223235.09931.c0  1
2006 Clark DJ, Condliffe EG, Patten C. Reliability of concentric and eccentric torque during isokinetic knee extension in post-stroke hemiparesis. Clinical Biomechanics (Bristol, Avon). 21: 395-404. PMID 16403594 DOI: 10.1016/j.clinbiomech.2005.11.004  1
2005 Condliffe EG, Clark DJ, Patten C. Reliability of elbow stretch reflex assessment in chronic post-stroke hemiparesis. Clinical Neurophysiology : Official Journal of the International Federation of Clinical Neurophysiology. 116: 1870-8. PMID 15979400 DOI: 10.1016/j.clinph.2005.02.030  1
2002 Oliver B, Parisi M, Clark D. Gene expression neighborhoods Journal of Biology. 1. PMID 12144705 DOI: 10.1186/1475-4924-1-4  1
2000 Felsenfeld G, Clark D, Studitsky V. Transcription through nucleosomes. Biophysical Chemistry. 86: 231-7. PMID 11026687 DOI: 10.1016/S0301-4622(00)00134-4  1
1996 Studitsky VM, Clark DJ, Felsenfeld G. Preparation of nucleosomal templates for transcription in vitro. Methods in Enzymology. 274: 246-56. PMID 8902809 DOI: 10.1016/S0076-6879(96)74021-1  1
1996 Felsenfeld G, Boyes J, Chung J, Clark D, Studitsky V. Chromatin structure and gene expression. Proceedings of the National Academy of Sciences of the United States of America. 93: 9384-8. PMID 8790338 DOI: 10.1073/pnas.93.18.9384  1
1995 Studitsky VM, Clark DJ, Felsenfeld G. Overcoming a nucleosomal barrier to transcription. Cell. 83: 19-27. PMID 7553869 DOI: 10.1016/0092-8674(95)90230-9  1
1994 Studitsky VM, Clark DJ, Felsenfeld G. A histone octamer can step around a transcribing polymerase without leaving the template. Cell. 76: 371-82. PMID 8293470 DOI: 10.1016/0092-8674(94)90343-3  1
1993 Clark DJ, Ghirlando R, Felsenfeld G, Eisenberg H. Effect of positive supercoiling on DNA compaction by nucleosome cores. Journal of Molecular Biology. 234: 297-301. PMID 8230214 DOI: 10.1006/jmbi.1993.1585  1
1993 Clark D, Reitman M, Studitsky V, Chung J, Westphal H, Lee E, Felsenfeld G. Chromatin structure of transcriptionally active genes. Cold Spring Harbor Symposia On Quantitative Biology. 58: 1-6. PMID 7956019  1
1992 Clark DJ, Felsenfeld G. A nucleosome core is transferred out of the path of a transcribing polymerase. Cell. 71: 11-22. PMID 1394427 DOI: 10.1016/0092-8674(92)90262-B  1
1991 Clark DJ, Felsenfeld G. Formation of nucleosomes on positively supercoiled DNA. The Embo Journal. 10: 387-95. PMID 1991452  1
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